INFO snakemake.logging [2025-11-23T04:40:41+0000]: None
host: compute-13-4
INFO snakemake.logging [2025-11-23T04:40:41+0000]: host: compute-13-4
Building DAG of jobs...
INFO snakemake.logging [2025-11-23T04:40:41+0000]: Building DAG of jobs...
Using shell: /usr/bin/bash
INFO snakemake.logging [2025-11-23T04:40:41+0000]: Using shell: /usr/bin/bash
Provided remote nodes: 1
INFO snakemake.logging [2025-11-23T04:40:41+0000]: Provided remote nodes: 1
Select jobs to execute...
INFO snakemake.logging [2025-11-23T04:40:41+0000]: Select jobs to execute...
Execute 1 jobs...
INFO snakemake.logging [2025-11-23T04:40:41+0000]: Execute 1 jobs...

[Sat Nov 22 23:40:41 2025]
rule get_ensembl:
    output: babel_downloads/ENSEMBL, babel_downloads/ENSEMBL/BioMartDownloadComplete
    jobid: 0
    reason: Forced execution
    resources: mem_mb=64000, mem_mib=954, disk_mb=50000, disk_mib=47684, tmpdir=<TBD>, mem=64G, runtime=240, cpus_per_task=4
INFO snakemake.logging [2025-11-23T04:40:41+0000]:  Rule: get_ensembl, Jobid: 0
INFO snakemake.logging [2025-11-23T04:40:41+0000]: Shell command: None
INFO snakemake.logging [2025-11-23T04:40:44+0000]: None
host: compute-13-4
INFO snakemake.logging [2025-11-23T04:40:44+0000]: host: compute-13-4
Building DAG of jobs...
INFO snakemake.logging [2025-11-23T04:40:44+0000]: Building DAG of jobs...
Using shell: /usr/bin/bash
INFO snakemake.logging [2025-11-23T04:40:44+0000]: Using shell: /usr/bin/bash
Provided cores: 64
INFO snakemake.logging [2025-11-23T04:40:44+0000]: Provided cores: 64
Rules claiming more threads will be scaled down.
INFO snakemake.logging [2025-11-23T04:40:44+0000]: Rules claiming more threads will be scaled down.
Select jobs to execute...
INFO snakemake.logging [2025-11-23T04:40:44+0000]: Select jobs to execute...
Execute 1 jobs...
INFO snakemake.logging [2025-11-23T04:40:44+0000]: Execute 1 jobs...

[Sat Nov 22 23:40:44 2025]
localrule get_ensembl:
    output: babel_downloads/ENSEMBL, babel_downloads/ENSEMBL/BioMartDownloadComplete
    jobid: 0
    reason: Forced execution
    resources: mem_mb=64000, mem_mib=954, disk_mb=50000, disk_mib=47684, tmpdir=/projects/babel/runs/gaurav/babel-1.14-umls-level-0/babel_downloads/tmp, mem=64G, runtime=240, cpus_per_task=4
INFO snakemake.logging [2025-11-23T04:40:44+0000]:  Rule: get_ensembl, Jobid: 0
INFO snakemake.logging [2025-11-23T04:40:44+0000]: Shell command: None
INFO root [2025-11-23T04:40:46+0000]: Downloading ENSEMBL dataset ttruncatus_gene_ensembl
INFO root [2025-11-23T04:40:47+0000]: Querying batch of 6 attributes for ttruncatus_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T04:40:49+0000]: Querying batch of 3 attributes for ttruncatus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T04:40:50+0000]: Downloading ENSEMBL dataset mmonoceros_gene_ensembl
INFO root [2025-11-23T04:40:51+0000]: Querying batch of 6 attributes for mmonoceros_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T04:40:54+0000]: Querying batch of 3 attributes for mmonoceros_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T04:40:55+0000]: Downloading ENSEMBL dataset sstibetan_gene_ensembl
INFO root [2025-11-23T04:40:56+0000]: Querying batch of 6 attributes for sstibetan_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T04:41:08+0000]: Querying batch of 3 attributes for sstibetan_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T04:41:09+0000]: Downloading ENSEMBL dataset cjacchus_gene_ensembl
INFO root [2025-11-23T04:41:11+0000]: Querying batch of 6 attributes for cjacchus_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T04:41:15+0000]: Querying batch of 3 attributes for cjacchus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T04:41:20+0000]: Downloading ENSEMBL dataset lcrocea_gene_ensembl
INFO root [2025-11-23T04:41:24+0000]: Querying batch of 6 attributes for lcrocea_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'zfin_id_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source']
INFO root [2025-11-23T04:41:41+0000]: Querying batch of 4 attributes for lcrocea_gene_ensembl (+ 'ensembl_gene_id'): ['description', 'external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T04:41:42+0000]: Downloading ENSEMBL dataset dleucas_gene_ensembl
INFO root [2025-11-23T04:41:43+0000]: Querying batch of 6 attributes for dleucas_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T04:41:45+0000]: Querying batch of 3 attributes for dleucas_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T04:41:47+0000]: Downloading ENSEMBL dataset bmusculus_gene_ensembl
INFO root [2025-11-23T04:41:51+0000]: Querying batch of 6 attributes for bmusculus_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T04:41:53+0000]: Querying batch of 3 attributes for bmusculus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T04:41:54+0000]: Downloading ENSEMBL dataset hsapiens_gene_ensembl
INFO root [2025-11-23T04:41:55+0000]: Querying batch of 6 attributes for hsapiens_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T04:44:58+0000]: Querying batch of 3 attributes for hsapiens_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T04:45:09+0000]: Downloading ENSEMBL dataset llaticaudata_gene_ensembl
INFO root [2025-11-23T04:45:10+0000]: Querying batch of 6 attributes for llaticaudata_gene_ensembl (+ 'ensembl_gene_id'): ['ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description', 'external_gene_source']
INFO root [2025-11-23T04:45:12+0000]: Querying batch of 2 attributes for llaticaudata_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name']
INFO root [2025-11-23T04:45:13+0000]: Downloading ENSEMBL dataset otshawytscha_gene_ensembl
INFO root [2025-11-23T04:45:13+0000]: Downloading ENSEMBL dataset pvampyrus_gene_ensembl
INFO root [2025-11-23T04:45:14+0000]: Querying batch of 6 attributes for pvampyrus_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T04:45:16+0000]: Querying batch of 3 attributes for pvampyrus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T04:45:17+0000]: Downloading ENSEMBL dataset acalliptera_gene_ensembl
INFO root [2025-11-23T04:45:18+0000]: Querying batch of 6 attributes for acalliptera_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'zfin_id_id', 'ensembl_peptide_id', 'gene_biotype', 'mgi_id', 'source']
INFO root [2025-11-23T04:45:30+0000]: Querying batch of 4 attributes for acalliptera_gene_ensembl (+ 'ensembl_gene_id'): ['description', 'external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T04:45:32+0000]: Downloading ENSEMBL dataset gfortis_gene_ensembl
INFO root [2025-11-23T04:45:33+0000]: Querying batch of 6 attributes for gfortis_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T04:45:35+0000]: Querying batch of 3 attributes for gfortis_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T04:45:36+0000]: Downloading ENSEMBL dataset pcapensis_gene_ensembl
INFO root [2025-11-23T04:45:40+0000]: Querying batch of 6 attributes for pcapensis_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'source', 'description', 'external_gene_source']
INFO root [2025-11-23T04:45:41+0000]: Querying batch of 2 attributes for pcapensis_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name']
INFO root [2025-11-23T04:45:42+0000]: Downloading ENSEMBL dataset itridecemlineatus_gene_ensembl
INFO root [2025-11-23T04:45:44+0000]: Querying batch of 6 attributes for itridecemlineatus_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T04:45:46+0000]: Querying batch of 3 attributes for itridecemlineatus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T04:45:47+0000]: Downloading ENSEMBL dataset clfamiliaris_gene_ensembl
INFO root [2025-11-23T04:45:48+0000]: Querying batch of 6 attributes for clfamiliaris_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T04:45:52+0000]: Querying batch of 3 attributes for clfamiliaris_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T04:45:54+0000]: Downloading ENSEMBL dataset loculatus_gene_ensembl
INFO root [2025-11-23T04:45:55+0000]: Querying batch of 6 attributes for loculatus_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'zfin_id_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source']
INFO root [2025-11-23T04:45:57+0000]: Querying batch of 4 attributes for loculatus_gene_ensembl (+ 'ensembl_gene_id'): ['description', 'external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T04:46:26+0000]: Downloading ENSEMBL dataset acarolinensis_gene_ensembl
INFO root [2025-11-23T04:46:27+0000]: Querying batch of 6 attributes for acarolinensis_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T04:46:30+0000]: Querying batch of 3 attributes for acarolinensis_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T04:46:31+0000]: Downloading ENSEMBL dataset xcouchianus_gene_ensembl
INFO root [2025-11-23T04:46:32+0000]: Querying batch of 6 attributes for xcouchianus_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'zfin_id_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source']
INFO root [2025-11-23T04:46:35+0000]: Querying batch of 4 attributes for xcouchianus_gene_ensembl (+ 'ensembl_gene_id'): ['description', 'external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T04:46:36+0000]: Downloading ENSEMBL dataset amexicanus_gene_ensembl
INFO root [2025-11-23T04:46:37+0000]: Querying batch of 6 attributes for amexicanus_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'zfin_id_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source']
INFO root [2025-11-23T04:46:44+0000]: Querying batch of 4 attributes for amexicanus_gene_ensembl (+ 'ensembl_gene_id'): ['description', 'external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T04:46:47+0000]: Downloading ENSEMBL dataset mspicilegus_gene_ensembl
INFO root [2025-11-23T04:46:48+0000]: Querying batch of 6 attributes for mspicilegus_gene_ensembl (+ 'ensembl_gene_id'): ['ensembl_peptide_id', 'gene_biotype', 'mgi_id', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T04:46:51+0000]: Querying batch of 3 attributes for mspicilegus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T04:46:52+0000]: Downloading ENSEMBL dataset cauratus_gene_ensembl
INFO root [2025-11-23T04:46:53+0000]: Querying batch of 6 attributes for cauratus_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'zfin_id_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source']
INFO root [2025-11-23T04:48:06+0000]: Querying batch of 4 attributes for cauratus_gene_ensembl (+ 'ensembl_gene_id'): ['description', 'external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T04:48:12+0000]: Downloading ENSEMBL dataset clanigera_gene_ensembl
INFO root [2025-11-23T04:48:13+0000]: Querying batch of 6 attributes for clanigera_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T04:48:16+0000]: Querying batch of 3 attributes for clanigera_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T04:48:19+0000]: Downloading ENSEMBL dataset cwagneri_gene_ensembl
INFO root [2025-11-23T04:48:20+0000]: Querying batch of 6 attributes for cwagneri_gene_ensembl (+ 'ensembl_gene_id'): ['ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description', 'external_gene_source']
INFO root [2025-11-23T04:48:32+0000]: Querying batch of 2 attributes for cwagneri_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name']
INFO root [2025-11-23T04:48:33+0000]: Downloading ENSEMBL dataset spunctatus_gene_ensembl
INFO root [2025-11-23T04:48:34+0000]: Querying batch of 6 attributes for spunctatus_gene_ensembl (+ 'ensembl_gene_id'): ['ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description', 'external_gene_source']
INFO root [2025-11-23T04:48:35+0000]: Querying batch of 2 attributes for spunctatus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name']
INFO root [2025-11-23T04:48:36+0000]: Downloading ENSEMBL dataset mmusculus_gene_ensembl
INFO root [2025-11-23T04:48:37+0000]: Querying batch of 6 attributes for mmusculus_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'mgi_id', 'external_synonym', 'source']
INFO root [2025-11-23T04:49:21+0000]: Querying batch of 4 attributes for mmusculus_gene_ensembl (+ 'ensembl_gene_id'): ['description', 'external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T04:49:26+0000]: Downloading ENSEMBL dataset omelastigma_gene_ensembl
INFO root [2025-11-23T04:49:27+0000]: Querying batch of 6 attributes for omelastigma_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'zfin_id_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source']
INFO root [2025-11-23T04:49:31+0000]: Querying batch of 4 attributes for omelastigma_gene_ensembl (+ 'ensembl_gene_id'): ['description', 'external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T04:49:33+0000]: Downloading ENSEMBL dataset acitrinellus_gene_ensembl
INFO root [2025-11-23T04:49:34+0000]: Querying batch of 6 attributes for acitrinellus_gene_ensembl (+ 'ensembl_gene_id'): ['zfin_id_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T04:49:36+0000]: Querying batch of 3 attributes for acitrinellus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T04:49:37+0000]: Downloading ENSEMBL dataset ssalar_gene_ensembl
INFO root [2025-11-23T04:49:38+0000]: Querying batch of 6 attributes for ssalar_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'zfin_id_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source']
/projects/babel/runs/gaurav/babel-1.14-umls-level-0/.venv/lib/python3.13/site-packages/apybiomart/classes.py:389: DtypeWarning: Columns (5) have mixed types. Specify dtype option on import or set low_memory=False.
  result = pd.read_csv(io.StringIO(resp.text), sep="\t")
INFO root [2025-11-23T04:53:25+0000]: Querying batch of 4 attributes for ssalar_gene_ensembl (+ 'ensembl_gene_id'): ['description', 'external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T04:53:40+0000]: Downloading ENSEMBL dataset csavignyi_gene_ensembl
INFO root [2025-11-23T04:53:41+0000]: Querying batch of 6 attributes for csavignyi_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'source', 'description', 'external_gene_source']
INFO root [2025-11-23T04:53:43+0000]: Querying batch of 2 attributes for csavignyi_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name']
INFO root [2025-11-23T04:53:44+0000]: Downloading ENSEMBL dataset lleishanense_gene_ensembl
INFO root [2025-11-23T04:53:44+0000]: Querying batch of 6 attributes for lleishanense_gene_ensembl (+ 'ensembl_gene_id'): ['ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description', 'external_gene_source']
INFO root [2025-11-23T04:53:47+0000]: Querying batch of 2 attributes for lleishanense_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name']
INFO root [2025-11-23T04:53:48+0000]: Downloading ENSEMBL dataset ssberkshire_gene_ensembl
INFO root [2025-11-23T04:53:49+0000]: Querying batch of 6 attributes for ssberkshire_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T04:53:52+0000]: Querying batch of 3 attributes for ssberkshire_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T04:53:53+0000]: Downloading ENSEMBL dataset nbrichardi_gene_ensembl
INFO root [2025-11-23T04:53:55+0000]: Querying batch of 6 attributes for nbrichardi_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'zfin_id_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source']
INFO root [2025-11-23T04:53:57+0000]: Querying batch of 4 attributes for nbrichardi_gene_ensembl (+ 'ensembl_gene_id'): ['description', 'external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T04:53:59+0000]: Downloading ENSEMBL dataset mochrogaster_gene_ensembl
INFO root [2025-11-23T04:54:00+0000]: Querying batch of 6 attributes for mochrogaster_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'mgi_id', 'external_synonym', 'source']
INFO root [2025-11-23T04:54:04+0000]: Querying batch of 4 attributes for mochrogaster_gene_ensembl (+ 'ensembl_gene_id'): ['description', 'external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T04:54:05+0000]: Downloading ENSEMBL dataset panubis_gene_ensembl
INFO root [2025-11-23T04:54:06+0000]: Querying batch of 6 attributes for panubis_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T04:54:09+0000]: Querying batch of 3 attributes for panubis_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T04:54:11+0000]: Downloading ENSEMBL dataset gaculeatus_gene_ensembl
INFO root [2025-11-23T04:54:12+0000]: Querying batch of 6 attributes for gaculeatus_gene_ensembl (+ 'ensembl_gene_id'): ['zfin_id_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T04:54:16+0000]: Querying batch of 3 attributes for gaculeatus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T04:54:17+0000]: Downloading ENSEMBL dataset cdromedarius_gene_ensembl
INFO root [2025-11-23T04:54:18+0000]: Querying batch of 6 attributes for cdromedarius_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T04:54:21+0000]: Querying batch of 3 attributes for cdromedarius_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T04:54:22+0000]: Downloading ENSEMBL dataset kmarmoratus_gene_ensembl
INFO root [2025-11-23T04:54:23+0000]: Querying batch of 6 attributes for kmarmoratus_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'zfin_id_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source']
INFO root [2025-11-23T04:54:25+0000]: Querying batch of 4 attributes for kmarmoratus_gene_ensembl (+ 'ensembl_gene_id'): ['description', 'external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T04:54:26+0000]: Downloading ENSEMBL dataset pleo_gene_ensembl
INFO root [2025-11-23T04:54:27+0000]: Querying batch of 6 attributes for pleo_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T04:54:33+0000]: Querying batch of 3 attributes for pleo_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T04:54:34+0000]: Downloading ENSEMBL dataset ptaltaica_gene_ensembl
INFO root [2025-11-23T04:54:35+0000]: Querying batch of 6 attributes for ptaltaica_gene_ensembl (+ 'ensembl_gene_id'): ['ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description', 'external_gene_source']
INFO root [2025-11-23T04:54:37+0000]: Querying batch of 2 attributes for ptaltaica_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name']
INFO root [2025-11-23T04:54:38+0000]: Downloading ENSEMBL dataset mfascicularis_gene_ensembl
INFO root [2025-11-23T04:54:39+0000]: Querying batch of 6 attributes for mfascicularis_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T04:54:43+0000]: Querying batch of 3 attributes for mfascicularis_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T04:54:45+0000]: Downloading ENSEMBL dataset preticulata_gene_ensembl
INFO root [2025-11-23T04:54:45+0000]: Querying batch of 6 attributes for preticulata_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'zfin_id_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source']
INFO root [2025-11-23T04:54:48+0000]: Querying batch of 4 attributes for preticulata_gene_ensembl (+ 'ensembl_gene_id'): ['description', 'external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T04:54:49+0000]: Downloading ENSEMBL dataset pkingsleyae_gene_ensembl
INFO root [2025-11-23T04:54:51+0000]: Querying batch of 6 attributes for pkingsleyae_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'zfin_id_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source']
INFO root [2025-11-23T04:54:54+0000]: Querying batch of 4 attributes for pkingsleyae_gene_ensembl (+ 'ensembl_gene_id'): ['description', 'external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T04:54:55+0000]: Downloading ENSEMBL dataset mpahari_gene_ensembl
INFO root [2025-11-23T04:54:56+0000]: Querying batch of 6 attributes for mpahari_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'mgi_id', 'source', 'description']
INFO root [2025-11-23T04:55:02+0000]: Querying batch of 3 attributes for mpahari_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T04:55:03+0000]: Downloading ENSEMBL dataset atestudineus_gene_ensembl
INFO root [2025-11-23T04:55:04+0000]: Querying batch of 6 attributes for atestudineus_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'zfin_id_id', 'ensembl_peptide_id', 'gene_biotype', 'mgi_id', 'source']
INFO root [2025-11-23T04:55:09+0000]: Querying batch of 4 attributes for atestudineus_gene_ensembl (+ 'ensembl_gene_id'): ['description', 'external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T04:55:11+0000]: Downloading ENSEMBL dataset slucioperca_gene_ensembl
INFO root [2025-11-23T04:55:12+0000]: Querying batch of 6 attributes for slucioperca_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'zfin_id_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source']
INFO root [2025-11-23T04:55:17+0000]: Querying batch of 4 attributes for slucioperca_gene_ensembl (+ 'ensembl_gene_id'): ['description', 'external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T04:55:18+0000]: Downloading ENSEMBL dataset mmulatta_gene_ensembl
INFO root [2025-11-23T04:55:19+0000]: Querying batch of 6 attributes for mmulatta_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T04:55:23+0000]: Querying batch of 3 attributes for mmulatta_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T04:55:25+0000]: Downloading ENSEMBL dataset lbergylta_gene_ensembl
INFO root [2025-11-23T04:55:26+0000]: Querying batch of 6 attributes for lbergylta_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'zfin_id_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source']
INFO root [2025-11-23T04:55:33+0000]: Querying batch of 4 attributes for lbergylta_gene_ensembl (+ 'ensembl_gene_id'): ['description', 'external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T04:55:35+0000]: Downloading ENSEMBL dataset bihybrid_gene_ensembl
INFO root [2025-11-23T04:55:36+0000]: Querying batch of 6 attributes for bihybrid_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T04:55:40+0000]: Querying batch of 3 attributes for bihybrid_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T04:55:42+0000]: Downloading ENSEMBL dataset gevgoodei_gene_ensembl
INFO root [2025-11-23T04:55:43+0000]: Querying batch of 6 attributes for gevgoodei_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T04:55:50+0000]: Querying batch of 3 attributes for gevgoodei_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T04:55:51+0000]: Downloading ENSEMBL dataset ipunctatus_gene_ensembl
INFO root [2025-11-23T04:55:52+0000]: Querying batch of 6 attributes for ipunctatus_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'zfin_id_id', 'ensembl_peptide_id', 'gene_biotype', 'mgi_id', 'external_synonym']
INFO root [2025-11-23T04:56:06+0000]: Querying batch of 5 attributes for ipunctatus_gene_ensembl (+ 'ensembl_gene_id'): ['source', 'description', 'external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T04:56:08+0000]: Downloading ENSEMBL dataset gmorhua_gene_ensembl
INFO root [2025-11-23T04:56:09+0000]: Querying batch of 6 attributes for gmorhua_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'zfin_id_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source']
INFO root [2025-11-23T04:56:22+0000]: Querying batch of 4 attributes for gmorhua_gene_ensembl (+ 'ensembl_gene_id'): ['description', 'external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T04:56:24+0000]: Downloading ENSEMBL dataset amelanoleuca_gene_ensembl
INFO root [2025-11-23T04:56:25+0000]: Querying batch of 6 attributes for amelanoleuca_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T04:56:28+0000]: Querying batch of 3 attributes for amelanoleuca_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T04:56:29+0000]: Downloading ENSEMBL dataset xmaculatus_gene_ensembl
INFO root [2025-11-23T04:56:30+0000]: Querying batch of 6 attributes for xmaculatus_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'zfin_id_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source']
INFO root [2025-11-23T04:56:33+0000]: Querying batch of 4 attributes for xmaculatus_gene_ensembl (+ 'ensembl_gene_id'): ['description', 'external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T04:56:51+0000]: Downloading ENSEMBL dataset dlabrax_gene_ensembl
INFO root [2025-11-23T04:56:51+0000]: Querying batch of 6 attributes for dlabrax_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'zfin_id_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source']
INFO root [2025-11-23T04:56:57+0000]: Querying batch of 4 attributes for dlabrax_gene_ensembl (+ 'ensembl_gene_id'): ['description', 'external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T04:56:59+0000]: Downloading ENSEMBL dataset smerianae_gene_ensembl
INFO root [2025-11-23T04:56:59+0000]: Querying batch of 6 attributes for smerianae_gene_ensembl (+ 'ensembl_gene_id'): ['ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description', 'external_gene_source']
INFO root [2025-11-23T04:57:01+0000]: Querying batch of 2 attributes for smerianae_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name']
INFO root [2025-11-23T04:57:02+0000]: Downloading ENSEMBL dataset sswuzhishan_gene_ensembl
INFO root [2025-11-23T04:57:03+0000]: Querying batch of 6 attributes for sswuzhishan_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T04:57:07+0000]: Querying batch of 3 attributes for sswuzhishan_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T04:57:13+0000]: Downloading ENSEMBL dataset ggallus_gene_ensembl
INFO root [2025-11-23T04:57:14+0000]: Querying batch of 6 attributes for ggallus_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T04:57:20+0000]: Querying batch of 3 attributes for ggallus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T04:57:22+0000]: Downloading ENSEMBL dataset platipinna_gene_ensembl
INFO root [2025-11-23T04:57:23+0000]: Querying batch of 6 attributes for platipinna_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'zfin_id_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source']
INFO root [2025-11-23T04:57:27+0000]: Querying batch of 4 attributes for platipinna_gene_ensembl (+ 'ensembl_gene_id'): ['description', 'external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T04:57:29+0000]: Downloading ENSEMBL dataset apolyacanthus_gene_ensembl
INFO root [2025-11-23T04:57:30+0000]: Querying batch of 6 attributes for apolyacanthus_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'zfin_id_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source']
INFO root [2025-11-23T04:57:34+0000]: Querying batch of 4 attributes for apolyacanthus_gene_ensembl (+ 'ensembl_gene_id'): ['description', 'external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T04:57:35+0000]: Downloading ENSEMBL dataset vursinus_gene_ensembl
INFO root [2025-11-23T04:57:37+0000]: Querying batch of 6 attributes for vursinus_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T04:57:39+0000]: Querying batch of 3 attributes for vursinus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T04:57:40+0000]: Downloading ENSEMBL dataset uparryii_gene_ensembl
INFO root [2025-11-23T04:57:44+0000]: Querying batch of 6 attributes for uparryii_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T04:57:46+0000]: Querying batch of 3 attributes for uparryii_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T04:57:48+0000]: Downloading ENSEMBL dataset rbieti_gene_ensembl
INFO root [2025-11-23T04:57:48+0000]: Querying batch of 6 attributes for rbieti_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T04:57:52+0000]: Querying batch of 3 attributes for rbieti_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T04:57:54+0000]: Downloading ENSEMBL dataset jjaculus_gene_ensembl
INFO root [2025-11-23T04:57:55+0000]: Querying batch of 6 attributes for jjaculus_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'mgi_id', 'external_synonym', 'source']
INFO root [2025-11-23T04:57:58+0000]: Querying batch of 4 attributes for jjaculus_gene_ensembl (+ 'ensembl_gene_id'): ['description', 'external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T04:57:59+0000]: Downloading ENSEMBL dataset mleucophaeus_gene_ensembl
INFO root [2025-11-23T04:58:00+0000]: Querying batch of 6 attributes for mleucophaeus_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T04:58:03+0000]: Querying batch of 3 attributes for mleucophaeus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T04:58:05+0000]: Downloading ENSEMBL dataset psinensis_gene_ensembl
INFO root [2025-11-23T04:58:06+0000]: Querying batch of 6 attributes for psinensis_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T04:58:07+0000]: Querying batch of 3 attributes for psinensis_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T04:58:08+0000]: Downloading ENSEMBL dataset dclupeoides_gene_ensembl
INFO root [2025-11-23T04:58:09+0000]: Querying batch of 6 attributes for dclupeoides_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'zfin_id_id', 'ensembl_peptide_id', 'gene_biotype', 'mgi_id', 'external_synonym']
/projects/babel/runs/gaurav/babel-1.14-umls-level-0/.venv/lib/python3.13/site-packages/apybiomart/classes.py:389: DtypeWarning: Columns (5,6) have mixed types. Specify dtype option on import or set low_memory=False.
  result = pd.read_csv(io.StringIO(resp.text), sep="\t")
INFO root [2025-11-23T05:07:04+0000]: Querying batch of 5 attributes for dclupeoides_gene_ensembl (+ 'ensembl_gene_id'): ['source', 'description', 'external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:07:30+0000]: Downloading ENSEMBL dataset rnorvegicus_gene_ensembl
INFO root [2025-11-23T05:07:32+0000]: Querying batch of 6 attributes for rnorvegicus_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'zfin_id_id', 'external_gene_source', 'ensembl_peptide_id', 'gene_biotype', 'mgi_id']
INFO root [2025-11-23T05:07:40+0000]: Querying batch of 6 attributes for rnorvegicus_gene_ensembl (+ 'ensembl_gene_id'): ['external_synonym', 'source', 'description', 'rgd_id', 'sgd_gene', 'external_gene_name']
INFO root [2025-11-23T05:07:44+0000]: Querying batch of 1 attributes for rnorvegicus_gene_ensembl (+ 'ensembl_gene_id'): ['chromosome_name']
INFO root [2025-11-23T05:07:46+0000]: Downloading ENSEMBL dataset celegans_gene_ensembl
INFO root [2025-11-23T05:07:47+0000]: Querying batch of 6 attributes for celegans_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'wormbase_gene', 'source', 'description']
INFO root [2025-11-23T05:08:01+0000]: Querying batch of 3 attributes for celegans_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:08:02+0000]: Downloading ENSEMBL dataset ssusmarc_gene_ensembl
INFO root [2025-11-23T05:08:03+0000]: Querying batch of 6 attributes for ssusmarc_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T05:08:06+0000]: Querying batch of 3 attributes for ssusmarc_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:08:08+0000]: Downloading ENSEMBL dataset ssmeishan_gene_ensembl
INFO root [2025-11-23T05:08:09+0000]: Querying batch of 6 attributes for ssmeishan_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T05:08:21+0000]: Querying batch of 3 attributes for ssmeishan_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:08:23+0000]: Downloading ENSEMBL dataset cporosus_gene_ensembl
INFO root [2025-11-23T05:08:24+0000]: Querying batch of 6 attributes for cporosus_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T05:08:26+0000]: Querying batch of 3 attributes for cporosus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:08:27+0000]: Downloading ENSEMBL dataset clumpus_gene_ensembl
INFO root [2025-11-23T05:08:28+0000]: Querying batch of 6 attributes for clumpus_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'zfin_id_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source']
INFO root [2025-11-23T05:08:35+0000]: Querying batch of 4 attributes for clumpus_gene_ensembl (+ 'ensembl_gene_id'): ['description', 'external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:08:37+0000]: Downloading ENSEMBL dataset mspretus_gene_ensembl
INFO root [2025-11-23T05:08:38+0000]: Querying batch of 6 attributes for mspretus_gene_ensembl (+ 'ensembl_gene_id'): ['ensembl_peptide_id', 'gene_biotype', 'mgi_id', 'source', 'description', 'external_gene_source']
INFO root [2025-11-23T05:08:44+0000]: Querying batch of 2 attributes for mspretus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:08:46+0000]: Downloading ENSEMBL dataset nscutatus_gene_ensembl
INFO root [2025-11-23T05:08:47+0000]: Querying batch of 6 attributes for nscutatus_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T05:08:54+0000]: Querying batch of 3 attributes for nscutatus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:09:01+0000]: Downloading ENSEMBL dataset elucius_gene_ensembl
INFO root [2025-11-23T05:09:01+0000]: Downloading ENSEMBL dataset mdomestica_gene_ensembl
INFO root [2025-11-23T05:09:02+0000]: Querying batch of 6 attributes for mdomestica_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T05:09:06+0000]: Querying batch of 3 attributes for mdomestica_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:09:07+0000]: Downloading ENSEMBL dataset cpbellii_gene_ensembl
INFO root [2025-11-23T05:09:08+0000]: Querying batch of 6 attributes for cpbellii_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T05:09:11+0000]: Querying batch of 3 attributes for cpbellii_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:09:12+0000]: Downloading ENSEMBL dataset osinensis_gene_ensembl
INFO root [2025-11-23T05:09:13+0000]: Querying batch of 6 attributes for osinensis_gene_ensembl (+ 'ensembl_gene_id'): ['zfin_id_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T05:09:17+0000]: Querying batch of 3 attributes for osinensis_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:09:18+0000]: Downloading ENSEMBL dataset mlucifugus_gene_ensembl
INFO root [2025-11-23T05:09:19+0000]: Querying batch of 6 attributes for mlucifugus_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T05:09:21+0000]: Querying batch of 3 attributes for mlucifugus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:09:22+0000]: Downloading ENSEMBL dataset psinus_gene_ensembl
INFO root [2025-11-23T05:09:23+0000]: Querying batch of 6 attributes for psinus_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T05:09:26+0000]: Querying batch of 3 attributes for psinus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:09:27+0000]: Downloading ENSEMBL dataset mzebra_gene_ensembl
INFO root [2025-11-23T05:09:28+0000]: Querying batch of 6 attributes for mzebra_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'zfin_id_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source']
INFO root [2025-11-23T05:09:31+0000]: Querying batch of 4 attributes for mzebra_gene_ensembl (+ 'ensembl_gene_id'): ['description', 'external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:09:32+0000]: Downloading ENSEMBL dataset fheteroclitus_gene_ensembl
INFO root [2025-11-23T05:09:33+0000]: Querying batch of 6 attributes for fheteroclitus_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'zfin_id_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source']
INFO root [2025-11-23T05:09:37+0000]: Querying batch of 4 attributes for fheteroclitus_gene_ensembl (+ 'ensembl_gene_id'): ['description', 'external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:09:41+0000]: Downloading ENSEMBL dataset cccarpio_gene_ensembl
INFO root [2025-11-23T05:09:42+0000]: Querying batch of 6 attributes for cccarpio_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'zfin_id_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source']
INFO root [2025-11-23T05:10:04+0000]: Querying batch of 4 attributes for cccarpio_gene_ensembl (+ 'ensembl_gene_id'): ['description', 'external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:10:07+0000]: Downloading ENSEMBL dataset ppaniscus_gene_ensembl
INFO root [2025-11-23T05:10:08+0000]: Querying batch of 6 attributes for ppaniscus_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T05:10:12+0000]: Querying batch of 3 attributes for ppaniscus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:10:13+0000]: Downloading ENSEMBL dataset scanaria_gene_ensembl
INFO root [2025-11-23T05:10:14+0000]: Querying batch of 6 attributes for scanaria_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T05:10:16+0000]: Querying batch of 3 attributes for scanaria_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:10:17+0000]: Downloading ENSEMBL dataset pmbairdii_gene_ensembl
INFO root [2025-11-23T05:10:18+0000]: Querying batch of 6 attributes for pmbairdii_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'mgi_id', 'external_synonym', 'source']
INFO root [2025-11-23T05:10:21+0000]: Querying batch of 4 attributes for pmbairdii_gene_ensembl (+ 'ensembl_gene_id'): ['description', 'external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:10:22+0000]: Downloading ENSEMBL dataset eeuropaeus_gene_ensembl
INFO root [2025-11-23T05:10:23+0000]: Querying batch of 6 attributes for eeuropaeus_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T05:10:25+0000]: Querying batch of 3 attributes for eeuropaeus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:10:26+0000]: Downloading ENSEMBL dataset rroxellana_gene_ensembl
INFO root [2025-11-23T05:10:27+0000]: Querying batch of 6 attributes for rroxellana_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T05:10:31+0000]: Querying batch of 3 attributes for rroxellana_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:10:33+0000]: Downloading ENSEMBL dataset pcoquereli_gene_ensembl
INFO root [2025-11-23T05:10:33+0000]: Querying batch of 6 attributes for pcoquereli_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T05:10:46+0000]: Querying batch of 3 attributes for pcoquereli_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:10:47+0000]: Downloading ENSEMBL dataset mpfuro_gene_ensembl
INFO root [2025-11-23T05:10:48+0000]: Querying batch of 6 attributes for mpfuro_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T05:11:00+0000]: Querying batch of 3 attributes for mpfuro_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:11:01+0000]: Downloading ENSEMBL dataset dordii_gene_ensembl
INFO root [2025-11-23T05:11:02+0000]: Querying batch of 6 attributes for dordii_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'mgi_id', 'external_synonym', 'source']
INFO root [2025-11-23T05:11:04+0000]: Querying batch of 4 attributes for dordii_gene_ensembl (+ 'ensembl_gene_id'): ['description', 'external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:11:05+0000]: Downloading ENSEMBL dataset applatyrhynchos_gene_ensembl
INFO root [2025-11-23T05:11:07+0000]: Querying batch of 6 attributes for applatyrhynchos_gene_ensembl (+ 'ensembl_gene_id'): ['ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description', 'external_gene_source']
INFO root [2025-11-23T05:11:09+0000]: Querying batch of 2 attributes for applatyrhynchos_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:11:10+0000]: Downloading ENSEMBL dataset mgallopavo_gene_ensembl
INFO root [2025-11-23T05:11:11+0000]: Querying batch of 6 attributes for mgallopavo_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T05:11:13+0000]: Querying batch of 3 attributes for mgallopavo_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:11:14+0000]: Downloading ENSEMBL dataset etelfairi_gene_ensembl
INFO root [2025-11-23T05:11:16+0000]: Querying batch of 6 attributes for etelfairi_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'source', 'description', 'external_gene_source']
INFO root [2025-11-23T05:11:17+0000]: Querying batch of 2 attributes for etelfairi_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:11:18+0000]: Downloading ENSEMBL dataset spartitus_gene_ensembl
INFO root [2025-11-23T05:11:19+0000]: Querying batch of 6 attributes for spartitus_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'zfin_id_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source']
INFO root [2025-11-23T05:11:22+0000]: Querying batch of 4 attributes for spartitus_gene_ensembl (+ 'ensembl_gene_id'): ['description', 'external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:11:24+0000]: Downloading ENSEMBL dataset nvison_gene_ensembl
INFO root [2025-11-23T05:11:25+0000]: Querying batch of 6 attributes for nvison_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T05:11:27+0000]: Querying batch of 3 attributes for nvison_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:11:28+0000]: Downloading ENSEMBL dataset trubripes_gene_ensembl
INFO root [2025-11-23T05:11:29+0000]: Querying batch of 6 attributes for trubripes_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'zfin_id_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source']
INFO root [2025-11-23T05:11:33+0000]: Querying batch of 4 attributes for trubripes_gene_ensembl (+ 'ensembl_gene_id'): ['description', 'external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:11:35+0000]: Downloading ENSEMBL dataset ngalili_gene_ensembl
INFO root [2025-11-23T05:11:36+0000]: Querying batch of 6 attributes for ngalili_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'mgi_id', 'external_synonym', 'source']
INFO root [2025-11-23T05:11:39+0000]: Querying batch of 4 attributes for ngalili_gene_ensembl (+ 'ensembl_gene_id'): ['description', 'external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:11:40+0000]: Downloading ENSEMBL dataset abrachyrhynchus_gene_ensembl
INFO root [2025-11-23T05:11:41+0000]: Querying batch of 6 attributes for abrachyrhynchus_gene_ensembl (+ 'ensembl_gene_id'): ['ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description', 'external_gene_source']
INFO root [2025-11-23T05:11:43+0000]: Querying batch of 2 attributes for abrachyrhynchus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:11:44+0000]: Downloading ENSEMBL dataset pmajor_gene_ensembl
INFO root [2025-11-23T05:11:45+0000]: Querying batch of 6 attributes for pmajor_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'source', 'description', 'external_gene_source']
INFO root [2025-11-23T05:11:47+0000]: Querying batch of 2 attributes for pmajor_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:11:52+0000]: Downloading ENSEMBL dataset strutta_gene_ensembl
INFO root [2025-11-23T05:11:54+0000]: Querying batch of 6 attributes for strutta_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'zfin_id_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source']
INFO root [2025-11-23T05:12:19+0000]: Querying batch of 4 attributes for strutta_gene_ensembl (+ 'ensembl_gene_id'): ['description', 'external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:12:34+0000]: Downloading ENSEMBL dataset csabaeus_gene_ensembl
INFO root [2025-11-23T05:12:35+0000]: Querying batch of 6 attributes for csabaeus_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T05:12:37+0000]: Querying batch of 3 attributes for csabaeus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:12:38+0000]: Downloading ENSEMBL dataset sharrisii_gene_ensembl
INFO root [2025-11-23T05:12:40+0000]: Querying batch of 6 attributes for sharrisii_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T05:12:42+0000]: Querying batch of 3 attributes for sharrisii_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:12:43+0000]: Downloading ENSEMBL dataset pmuralis_gene_ensembl
INFO root [2025-11-23T05:12:44+0000]: Querying batch of 6 attributes for pmuralis_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T05:12:47+0000]: Querying batch of 3 attributes for pmuralis_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:12:48+0000]: Downloading ENSEMBL dataset sldorsalis_gene_ensembl
INFO root [2025-11-23T05:12:49+0000]: Querying batch of 6 attributes for sldorsalis_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'zfin_id_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source']
INFO root [2025-11-23T05:13:01+0000]: Querying batch of 4 attributes for sldorsalis_gene_ensembl (+ 'ensembl_gene_id'): ['description', 'external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:13:02+0000]: Downloading ENSEMBL dataset cintestinalis_gene_ensembl
INFO root [2025-11-23T05:13:03+0000]: Querying batch of 6 attributes for cintestinalis_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T05:13:05+0000]: Querying batch of 3 attributes for cintestinalis_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:13:06+0000]: Downloading ENSEMBL dataset ecalabaricus_gene_ensembl
INFO root [2025-11-23T05:13:07+0000]: Querying batch of 6 attributes for ecalabaricus_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'zfin_id_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source']
INFO root [2025-11-23T05:13:10+0000]: Querying batch of 4 attributes for ecalabaricus_gene_ensembl (+ 'ensembl_gene_id'): ['description', 'external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:13:11+0000]: Downloading ENSEMBL dataset oanatinus_gene_ensembl
INFO root [2025-11-23T05:13:12+0000]: Querying batch of 6 attributes for oanatinus_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T05:13:15+0000]: Querying batch of 3 attributes for oanatinus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:13:16+0000]: Downloading ENSEMBL dataset bgrunniens_gene_ensembl
INFO root [2025-11-23T05:13:17+0000]: Querying batch of 6 attributes for bgrunniens_gene_ensembl (+ 'ensembl_gene_id'): ['ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description', 'external_gene_source']
INFO root [2025-11-23T05:13:19+0000]: Querying batch of 2 attributes for bgrunniens_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:13:20+0000]: Downloading ENSEMBL dataset pcatodon_gene_ensembl
INFO root [2025-11-23T05:13:22+0000]: Querying batch of 6 attributes for pcatodon_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T05:13:24+0000]: Querying batch of 3 attributes for pcatodon_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:13:25+0000]: Downloading ENSEMBL dataset sspietrain_gene_ensembl
INFO root [2025-11-23T05:13:26+0000]: Querying batch of 6 attributes for sspietrain_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T05:13:33+0000]: Querying batch of 3 attributes for sspietrain_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:13:35+0000]: Downloading ENSEMBL dataset fcatus_gene_ensembl
INFO root [2025-11-23T05:13:36+0000]: Querying batch of 6 attributes for fcatus_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'zfin_id_id', 'ensembl_peptide_id', 'gene_biotype', 'mgi_id', 'external_synonym']
INFO root [2025-11-23T05:13:43+0000]: Querying batch of 5 attributes for fcatus_gene_ensembl (+ 'ensembl_gene_id'): ['source', 'description', 'external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:13:45+0000]: Downloading ENSEMBL dataset ssbamei_gene_ensembl
INFO root [2025-11-23T05:13:46+0000]: Querying batch of 6 attributes for ssbamei_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T05:13:49+0000]: Querying batch of 3 attributes for ssbamei_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:13:51+0000]: Downloading ENSEMBL dataset catys_gene_ensembl
INFO root [2025-11-23T05:13:52+0000]: Querying batch of 6 attributes for catys_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T05:13:55+0000]: Querying batch of 3 attributes for catys_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:13:56+0000]: Downloading ENSEMBL dataset ssjinhua_gene_ensembl
INFO root [2025-11-23T05:13:57+0000]: Querying batch of 6 attributes for ssjinhua_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T05:14:01+0000]: Querying batch of 3 attributes for ssjinhua_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:14:06+0000]: Downloading ENSEMBL dataset saraneus_gene_ensembl
INFO root [2025-11-23T05:14:07+0000]: Querying batch of 6 attributes for saraneus_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'source', 'description', 'external_gene_source']
INFO root [2025-11-23T05:14:08+0000]: Querying batch of 2 attributes for saraneus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:14:09+0000]: Downloading ENSEMBL dataset dnovemcinctus_gene_ensembl
INFO root [2025-11-23T05:14:10+0000]: Querying batch of 6 attributes for dnovemcinctus_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T05:14:13+0000]: Querying batch of 3 attributes for dnovemcinctus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:14:14+0000]: Downloading ENSEMBL dataset ggorilla_gene_ensembl
INFO root [2025-11-23T05:14:15+0000]: Querying batch of 6 attributes for ggorilla_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T05:14:19+0000]: Querying batch of 3 attributes for ggorilla_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:14:20+0000]: Downloading ENSEMBL dataset cmilii_gene_ensembl
INFO root [2025-11-23T05:14:21+0000]: Querying batch of 6 attributes for cmilii_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'zfin_id_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source']
INFO root [2025-11-23T05:14:27+0000]: Querying batch of 4 attributes for cmilii_gene_ensembl (+ 'ensembl_gene_id'): ['description', 'external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:14:28+0000]: Downloading ENSEMBL dataset btaurus_gene_ensembl
INFO root [2025-11-23T05:14:29+0000]: Querying batch of 6 attributes for btaurus_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T05:14:43+0000]: Querying batch of 3 attributes for btaurus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:14:45+0000]: Downloading ENSEMBL dataset eelectricus_gene_ensembl
INFO root [2025-11-23T05:14:46+0000]: Querying batch of 6 attributes for eelectricus_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'zfin_id_id', 'ensembl_peptide_id', 'gene_biotype', 'mgi_id', 'external_synonym']
INFO root [2025-11-23T05:14:51+0000]: Querying batch of 5 attributes for eelectricus_gene_ensembl (+ 'ensembl_gene_id'): ['source', 'description', 'external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:14:52+0000]: Downloading ENSEMBL dataset tctriunguis_gene_ensembl
INFO root [2025-11-23T05:14:53+0000]: Querying batch of 6 attributes for tctriunguis_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T05:14:55+0000]: Querying batch of 3 attributes for tctriunguis_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:14:57+0000]: Downloading ENSEMBL dataset oniloticus_gene_ensembl
INFO root [2025-11-23T05:14:58+0000]: Querying batch of 6 attributes for oniloticus_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'zfin_id_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source']
INFO root [2025-11-23T05:15:04+0000]: Querying batch of 4 attributes for oniloticus_gene_ensembl (+ 'ensembl_gene_id'): ['description', 'external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:15:05+0000]: Downloading ENSEMBL dataset easinus_gene_ensembl
INFO root [2025-11-23T05:15:06+0000]: Querying batch of 6 attributes for easinus_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T05:15:10+0000]: Querying batch of 3 attributes for easinus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:15:12+0000]: Downloading ENSEMBL dataset pcinereus_gene_ensembl
INFO root [2025-11-23T05:15:15+0000]: Querying batch of 6 attributes for pcinereus_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T05:15:25+0000]: Querying batch of 3 attributes for pcinereus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:15:26+0000]: Downloading ENSEMBL dataset sshampshire_gene_ensembl
INFO root [2025-11-23T05:15:27+0000]: Querying batch of 6 attributes for sshampshire_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T05:15:31+0000]: Querying batch of 3 attributes for sshampshire_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:15:32+0000]: Downloading ENSEMBL dataset pformosa_gene_ensembl
INFO root [2025-11-23T05:15:33+0000]: Querying batch of 6 attributes for pformosa_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'zfin_id_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source']
INFO root [2025-11-23T05:15:36+0000]: Querying batch of 4 attributes for pformosa_gene_ensembl (+ 'ensembl_gene_id'): ['description', 'external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:15:37+0000]: Downloading ENSEMBL dataset aocellaris_gene_ensembl
INFO root [2025-11-23T05:15:37+0000]: Downloading ENSEMBL dataset mmoschiferus_gene_ensembl
INFO root [2025-11-23T05:15:38+0000]: Querying batch of 6 attributes for mmoschiferus_gene_ensembl (+ 'ensembl_gene_id'): ['ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description', 'external_gene_source']
INFO root [2025-11-23T05:15:40+0000]: Querying batch of 2 attributes for mmoschiferus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:15:41+0000]: Downloading ENSEMBL dataset svulgaris_gene_ensembl
INFO root [2025-11-23T05:15:42+0000]: Querying batch of 6 attributes for svulgaris_gene_ensembl (+ 'ensembl_gene_id'): ['ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description', 'external_gene_source']
INFO root [2025-11-23T05:15:44+0000]: Querying batch of 2 attributes for svulgaris_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:15:45+0000]: Downloading ENSEMBL dataset nnaja_gene_ensembl
INFO root [2025-11-23T05:15:46+0000]: Querying batch of 6 attributes for nnaja_gene_ensembl (+ 'ensembl_gene_id'): ['ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description', 'external_gene_source']
INFO root [2025-11-23T05:15:48+0000]: Querying batch of 2 attributes for nnaja_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:15:49+0000]: Downloading ENSEMBL dataset anancymaae_gene_ensembl
INFO root [2025-11-23T05:15:50+0000]: Querying batch of 6 attributes for anancymaae_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T05:15:54+0000]: Querying batch of 3 attributes for anancymaae_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:15:55+0000]: Downloading ENSEMBL dataset mmurinus_gene_ensembl
INFO root [2025-11-23T05:15:56+0000]: Querying batch of 6 attributes for mmurinus_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T05:16:08+0000]: Querying batch of 3 attributes for mmurinus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:16:09+0000]: Downloading ENSEMBL dataset mcaroli_gene_ensembl
INFO root [2025-11-23T05:16:10+0000]: Querying batch of 6 attributes for mcaroli_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'mgi_id', 'external_synonym', 'source']
INFO root [2025-11-23T05:16:16+0000]: Querying batch of 4 attributes for mcaroli_gene_ensembl (+ 'ensembl_gene_id'): ['description', 'external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:16:18+0000]: Downloading ENSEMBL dataset lchalumnae_gene_ensembl
INFO root [2025-11-23T05:16:20+0000]: Querying batch of 6 attributes for lchalumnae_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'zfin_id_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source']
INFO root [2025-11-23T05:16:22+0000]: Querying batch of 4 attributes for lchalumnae_gene_ensembl (+ 'ensembl_gene_id'): ['description', 'external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:16:23+0000]: Downloading ENSEMBL dataset ssrongchang_gene_ensembl
INFO root [2025-11-23T05:16:24+0000]: Querying batch of 6 attributes for ssrongchang_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T05:16:27+0000]: Querying batch of 3 attributes for ssrongchang_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:16:28+0000]: Downloading ENSEMBL dataset cabingdonii_gene_ensembl
INFO root [2025-11-23T05:16:29+0000]: Querying batch of 6 attributes for cabingdonii_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T05:16:31+0000]: Querying batch of 3 attributes for cabingdonii_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:16:33+0000]: Downloading ENSEMBL dataset vpacos_gene_ensembl
INFO root [2025-11-23T05:16:34+0000]: Querying batch of 6 attributes for vpacos_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T05:16:35+0000]: Querying batch of 3 attributes for vpacos_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:16:36+0000]: Downloading ENSEMBL dataset pnattereri_gene_ensembl
INFO root [2025-11-23T05:16:37+0000]: Querying batch of 6 attributes for pnattereri_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'zfin_id_id', 'ensembl_peptide_id', 'gene_biotype', 'mgi_id', 'external_synonym']
INFO root [2025-11-23T05:16:43+0000]: Querying batch of 5 attributes for pnattereri_gene_ensembl (+ 'ensembl_gene_id'): ['source', 'description', 'external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:16:45+0000]: Downloading ENSEMBL dataset saurata_gene_ensembl
INFO root [2025-11-23T05:16:46+0000]: Querying batch of 6 attributes for saurata_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'zfin_id_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source']
INFO root [2025-11-23T05:16:51+0000]: Querying batch of 4 attributes for saurata_gene_ensembl (+ 'ensembl_gene_id'): ['description', 'external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:16:53+0000]: Downloading ENSEMBL dataset mnemestrina_gene_ensembl
INFO root [2025-11-23T05:16:54+0000]: Querying batch of 6 attributes for mnemestrina_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T05:16:57+0000]: Querying batch of 3 attributes for mnemestrina_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:16:59+0000]: Downloading ENSEMBL dataset bbbison_gene_ensembl
INFO root [2025-11-23T05:17:00+0000]: Querying batch of 6 attributes for bbbison_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T05:17:02+0000]: Querying batch of 3 attributes for bbbison_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:17:04+0000]: Downloading ENSEMBL dataset chircus_gene_ensembl
INFO root [2025-11-23T05:17:05+0000]: Querying batch of 6 attributes for chircus_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T05:17:07+0000]: Querying batch of 3 attributes for chircus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:17:08+0000]: Downloading ENSEMBL dataset ptextilis_gene_ensembl
INFO root [2025-11-23T05:17:10+0000]: Querying batch of 6 attributes for ptextilis_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T05:17:13+0000]: Querying batch of 3 attributes for ptextilis_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:17:14+0000]: Downloading ENSEMBL dataset sslargewhite_gene_ensembl
INFO root [2025-11-23T05:17:15+0000]: Querying batch of 6 attributes for sslargewhite_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T05:17:29+0000]: Querying batch of 3 attributes for sslargewhite_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:17:30+0000]: Downloading ENSEMBL dataset smaximus_gene_ensembl
INFO root [2025-11-23T05:17:32+0000]: Querying batch of 6 attributes for smaximus_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'zfin_id_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source']
INFO root [2025-11-23T05:17:51+0000]: Querying batch of 4 attributes for smaximus_gene_ensembl (+ 'ensembl_gene_id'): ['description', 'external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:17:55+0000]: Downloading ENSEMBL dataset ojavanicus_gene_ensembl
INFO root [2025-11-23T05:17:56+0000]: Querying batch of 6 attributes for ojavanicus_gene_ensembl (+ 'ensembl_gene_id'): ['zfin_id_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T05:17:59+0000]: Querying batch of 3 attributes for ojavanicus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:18:01+0000]: Downloading ENSEMBL dataset cporcellus_gene_ensembl
INFO root [2025-11-23T05:18:02+0000]: Querying batch of 6 attributes for cporcellus_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T05:18:04+0000]: Querying batch of 3 attributes for cporcellus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:18:05+0000]: Downloading ENSEMBL dataset tnigroviridis_gene_ensembl
INFO root [2025-11-23T05:18:06+0000]: Querying batch of 6 attributes for tnigroviridis_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'zfin_id_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source']
INFO root [2025-11-23T05:18:09+0000]: Querying batch of 4 attributes for tnigroviridis_gene_ensembl (+ 'ensembl_gene_id'): ['description', 'external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:18:10+0000]: Downloading ENSEMBL dataset odegus_gene_ensembl
INFO root [2025-11-23T05:18:11+0000]: Querying batch of 6 attributes for odegus_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T05:18:13+0000]: Querying batch of 3 attributes for odegus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:18:14+0000]: Downloading ENSEMBL dataset hhucho_gene_ensembl
INFO root [2025-11-23T05:18:16+0000]: Querying batch of 6 attributes for hhucho_gene_ensembl (+ 'ensembl_gene_id'): ['zfin_id_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T05:18:21+0000]: Querying batch of 3 attributes for hhucho_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:18:23+0000]: Downloading ENSEMBL dataset pabelii_gene_ensembl
INFO root [2025-11-23T05:18:23+0000]: Querying batch of 6 attributes for pabelii_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T05:18:27+0000]: Querying batch of 3 attributes for pabelii_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:18:32+0000]: Downloading ENSEMBL dataset dmelanogaster_gene_ensembl
INFO root [2025-11-23T05:18:33+0000]: Querying batch of 6 attributes for dmelanogaster_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'flybase_gene_id', 'gene_biotype', 'external_synonym', 'source']
INFO root [2025-11-23T05:18:52+0000]: Querying batch of 4 attributes for dmelanogaster_gene_ensembl (+ 'ensembl_gene_id'): ['description', 'external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:18:57+0000]: Downloading ENSEMBL dataset ocuniculus_gene_ensembl
INFO root [2025-11-23T05:18:58+0000]: Querying batch of 6 attributes for ocuniculus_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T05:19:01+0000]: Querying batch of 3 attributes for ocuniculus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:19:03+0000]: Downloading ENSEMBL dataset xtropicalis_gene_ensembl
INFO root [2025-11-23T05:19:03+0000]: Querying batch of 6 attributes for xtropicalis_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T05:19:15+0000]: Querying batch of 3 attributes for xtropicalis_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:19:17+0000]: Downloading ENSEMBL dataset csemilaevis_gene_ensembl
INFO root [2025-11-23T05:19:18+0000]: Querying batch of 6 attributes for csemilaevis_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'zfin_id_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source']
INFO root [2025-11-23T05:19:29+0000]: Querying batch of 4 attributes for csemilaevis_gene_ensembl (+ 'ensembl_gene_id'): ['description', 'external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:19:31+0000]: Downloading ENSEMBL dataset sdumerili_gene_ensembl
INFO root [2025-11-23T05:19:32+0000]: Querying batch of 6 attributes for sdumerili_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'zfin_id_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source']
INFO root [2025-11-23T05:19:34+0000]: Querying batch of 4 attributes for sdumerili_gene_ensembl (+ 'ensembl_gene_id'): ['description', 'external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:19:36+0000]: Downloading ENSEMBL dataset ppardus_gene_ensembl
INFO root [2025-11-23T05:19:37+0000]: Querying batch of 6 attributes for ppardus_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T05:19:40+0000]: Querying batch of 3 attributes for ppardus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:19:41+0000]: Downloading ENSEMBL dataset csyrichta_gene_ensembl
INFO root [2025-11-23T05:19:42+0000]: Querying batch of 6 attributes for csyrichta_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T05:19:45+0000]: Querying batch of 3 attributes for csyrichta_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:19:46+0000]: Downloading ENSEMBL dataset eburgeri_gene_ensembl
INFO root [2025-11-23T05:19:47+0000]: Querying batch of 6 attributes for eburgeri_gene_ensembl (+ 'ensembl_gene_id'): ['zfin_id_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T05:19:49+0000]: Querying batch of 3 attributes for eburgeri_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:19:51+0000]: Downloading ENSEMBL dataset cvariegatus_gene_ensembl
INFO root [2025-11-23T05:19:52+0000]: Querying batch of 6 attributes for cvariegatus_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'zfin_id_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source']
INFO root [2025-11-23T05:19:55+0000]: Querying batch of 4 attributes for cvariegatus_gene_ensembl (+ 'ensembl_gene_id'): ['description', 'external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:19:57+0000]: Downloading ENSEMBL dataset acchrysaetos_gene_ensembl
INFO root [2025-11-23T05:19:58+0000]: Querying batch of 6 attributes for acchrysaetos_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T05:20:00+0000]: Querying batch of 3 attributes for acchrysaetos_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:20:01+0000]: Downloading ENSEMBL dataset lcalcarifer_gene_ensembl
INFO root [2025-11-23T05:20:02+0000]: Querying batch of 6 attributes for lcalcarifer_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'zfin_id_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source']
INFO root [2025-11-23T05:20:09+0000]: Querying batch of 4 attributes for lcalcarifer_gene_ensembl (+ 'ensembl_gene_id'): ['description', 'external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:20:11+0000]: Downloading ENSEMBL dataset rferrumequinum_gene_ensembl
INFO root [2025-11-23T05:20:12+0000]: Querying batch of 6 attributes for rferrumequinum_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T05:20:14+0000]: Querying batch of 3 attributes for rferrumequinum_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:20:16+0000]: Downloading ENSEMBL dataset aplatyrhynchos_gene_ensembl
INFO root [2025-11-23T05:20:16+0000]: Querying batch of 6 attributes for aplatyrhynchos_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T05:20:18+0000]: Querying batch of 3 attributes for aplatyrhynchos_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:20:19+0000]: Downloading ENSEMBL dataset cldingo_gene_ensembl
INFO root [2025-11-23T05:20:20+0000]: Querying batch of 6 attributes for cldingo_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T05:20:22+0000]: Querying batch of 3 attributes for cldingo_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:20:24+0000]: Downloading ENSEMBL dataset olatipes_gene_ensembl
INFO root [2025-11-23T05:20:25+0000]: Querying batch of 6 attributes for olatipes_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'zfin_id_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source']
INFO root [2025-11-23T05:20:29+0000]: Querying batch of 4 attributes for olatipes_gene_ensembl (+ 'ensembl_gene_id'): ['description', 'external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:20:30+0000]: Downloading ENSEMBL dataset vvulpes_gene_ensembl
INFO root [2025-11-23T05:20:31+0000]: Querying batch of 6 attributes for vvulpes_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T05:20:36+0000]: Querying batch of 3 attributes for vvulpes_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:20:37+0000]: Downloading ENSEMBL dataset cimitator_gene_ensembl
INFO root [2025-11-23T05:20:38+0000]: Querying batch of 6 attributes for cimitator_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T05:20:41+0000]: Querying batch of 3 attributes for cimitator_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:20:42+0000]: Downloading ENSEMBL dataset mauratus_gene_ensembl
INFO root [2025-11-23T05:20:43+0000]: Querying batch of 6 attributes for mauratus_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'mgi_id', 'external_synonym', 'source']
INFO root [2025-11-23T05:20:46+0000]: Querying batch of 4 attributes for mauratus_gene_ensembl (+ 'ensembl_gene_id'): ['description', 'external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:20:47+0000]: Downloading ENSEMBL dataset apercula_gene_ensembl
INFO root [2025-11-23T05:20:48+0000]: Querying batch of 6 attributes for apercula_gene_ensembl (+ 'ensembl_gene_id'): ['zfin_id_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T05:20:51+0000]: Querying batch of 3 attributes for apercula_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:20:52+0000]: Downloading ENSEMBL dataset cgobio_gene_ensembl
INFO root [2025-11-23T05:20:53+0000]: Querying batch of 6 attributes for cgobio_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'zfin_id_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source']
INFO root [2025-11-23T05:20:59+0000]: Querying batch of 4 attributes for cgobio_gene_ensembl (+ 'ensembl_gene_id'): ['description', 'external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:21:01+0000]: Downloading ENSEMBL dataset bsplendens_gene_ensembl
INFO root [2025-11-23T05:21:02+0000]: Querying batch of 6 attributes for bsplendens_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'zfin_id_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source']
INFO root [2025-11-23T05:21:06+0000]: Querying batch of 4 attributes for bsplendens_gene_ensembl (+ 'ensembl_gene_id'): ['description', 'external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:21:08+0000]: Downloading ENSEMBL dataset sscrofa_gene_ensembl
INFO root [2025-11-23T05:21:09+0000]: Querying batch of 6 attributes for sscrofa_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source', 'description']
INFO root [2025-11-23T05:21:13+0000]: Querying batch of 3 attributes for sscrofa_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:21:14+0000]: Downloading ENSEMBL dataset pmarinus_gene_ensembl
INFO root [2025-11-23T05:21:15+0000]: Querying batch of 6 attributes for pmarinus_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'zfin_id_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source']
INFO root [2025-11-23T05:21:20+0000]: Querying batch of 4 attributes for pmarinus_gene_ensembl (+ 'ensembl_gene_id'): ['description', 'external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:21:21+0000]: Downloading ENSEMBL dataset hburtoni_gene_ensembl
INFO root [2025-11-23T05:21:22+0000]: Querying batch of 6 attributes for hburtoni_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'zfin_id_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source']
INFO root [2025-11-23T05:21:36+0000]: Querying batch of 4 attributes for hburtoni_gene_ensembl (+ 'ensembl_gene_id'): ['description', 'external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:21:42+0000]: Downloading ENSEMBL dataset drerio_gene_ensembl
INFO root [2025-11-23T05:21:43+0000]: Querying batch of 6 attributes for drerio_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'zfin_id_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source']
INFO root [2025-11-23T05:21:59+0000]: Querying batch of 4 attributes for drerio_gene_ensembl (+ 'ensembl_gene_id'): ['description', 'external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:22:01+0000]: Downloading ENSEMBL dataset hcomes_gene_ensembl
INFO root [2025-11-23T05:22:02+0000]: Querying batch of 6 attributes for hcomes_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'zfin_id_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source']
INFO root [2025-11-23T05:22:06+0000]: Querying batch of 4 attributes for hcomes_gene_ensembl (+ 'ensembl_gene_id'): ['description', 'external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:22:07+0000]: Downloading ENSEMBL dataset mmurdjan_gene_ensembl
INFO root [2025-11-23T05:22:08+0000]: Querying batch of 6 attributes for mmurdjan_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'zfin_id_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source']
INFO root [2025-11-23T05:22:24+0000]: Querying batch of 4 attributes for mmurdjan_gene_ensembl (+ 'ensembl_gene_id'): ['description', 'external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:22:26+0000]: Downloading ENSEMBL dataset hgfemale_gene_ensembl
INFO root [2025-11-23T05:22:26+0000]: Downloading ENSEMBL dataset pnyererei_gene_ensembl
INFO root [2025-11-23T05:22:27+0000]: Querying batch of 6 attributes for pnyererei_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'zfin_id_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source']
INFO root [2025-11-23T05:22:30+0000]: Querying batch of 4 attributes for pnyererei_gene_ensembl (+ 'ensembl_gene_id'): ['description', 'external_gene_source', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:22:31+0000]: Downloading ENSEMBL dataset oaries_gene_ensembl
INFO root [2025-11-23T05:22:35+0000]: Querying batch of 6 attributes for oaries_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'zfin_id_id', 'external_gene_source', 'ensembl_peptide_id', 'gene_biotype', 'mgi_id']
INFO root [2025-11-23T05:22:40+0000]: Querying batch of 6 attributes for oaries_gene_ensembl (+ 'ensembl_gene_id'): ['external_synonym', 'source', 'description', 'sgd_gene', 'external_gene_name', 'chromosome_name']
INFO root [2025-11-23T05:22:44+0000]: Downloading ENSEMBL dataset omykiss_gene_ensembl
INFO root [2025-11-23T05:22:45+0000]: Querying batch of 6 attributes for omykiss_gene_ensembl (+ 'ensembl_gene_id'): ['entrezgene_id', 'zfin_id_id', 'ensembl_peptide_id', 'gene_biotype', 'external_synonym', 'source']
srun: Job step aborted: Waiting up to 32 seconds for job step to finish.
[2025-11-23T03:40:36.035] error: *** STEP 45781.0 ON compute-13-4 CANCELLED AT 2025-11-23T03:40:36 DUE TO TIME LIMIT ***
[2025-11-23T03:40:36.035] error: *** JOB 45781 ON compute-13-4 CANCELLED AT 2025-11-23T03:40:36 DUE TO TIME LIMIT ***
Will exit after finishing currently running jobs (scheduler).
INFO snakemake.logging [2025-11-23T08:40:36+0000]: Will exit after finishing currently running jobs (scheduler).
Will exit after finishing currently running jobs (scheduler).
INFO snakemake.logging [2025-11-23T08:40:36+0000]: Will exit after finishing currently running jobs (scheduler).