combined_from:
  build_ncit_uniprot_relationships():
    combined_from: []
    counts:
      concords:
        count_concords: 6277
        count_distinct_curies: 12362
        predicates:
          eq: 6277
        prefix_counts:
          eq(NCIT, UniProtKB): 6277
    created_at: '2025-11-22T02:56:58.509514'
    description: Extracts NCIT-to-UniProtKB relationships from the NCIt-SwissProt_Mapping
      file (babel_downloads/NCIT/NCIt-SwissProt_Mapping.txt).
    name: build_ncit_uniprot_relationships()
    sources:
    - filename: babel_downloads/NCIT/NCIt-SwissProt_Mapping.txt
      name: NCIt-SwissProt Mapping file
    type: concord
    url: ''
  build_pr_uniprot_relationships():
    combined_from: []
    counts:
      concords:
        count_concords: 205386
        count_distinct_curies: 391995
        predicates:
          xref: 205386
        prefix_counts:
          xref(Alzforum_mut, PR): 459
          xref(DTO, PR): 1829
          xref(EcoCyc, PR): 4039
          xref(GenPept, PR): 40
          xref(IRO, PR): 10
          xref(IUPHAR, PR): 5
          xref(IUPHARfam, PR): 93
          xref(IUPHARobj, PR): 2823
          xref(MIRO, PR): 11
          xref(MRO, PR): 23
          xref(PDB, PR): 10
          xref(PIRSF, PR): 555
          xref(PR, Reactome): 20592
          xref(PR, TDR): 512
          xref(PR, UniProtKB): 173922
          xref(PR, UniProtKB_VAR): 463
    created_at: '2025-11-22T17:12:42.641068'
    description: Extracts PR xrefs from UberGraph after getting subclasses and xrefs
      of PR:000000001, ignoring [].
    name: build_pr_uniprot_relationships()
    sources:
    - name: UberGraph
      type: UberGraph
    type: concord
    url: ''
  build_protein_uniprotkb_ensemble_relationships():
    combined_from: []
    counts:
      concords:
        count_concords: 19404574
        count_distinct_curies: 28512080
        predicates:
          eq: 19404574
        prefix_counts:
          eq(ENSEMBL, ENSEMBL): 9673501
          eq(ENSEMBL, UniProtKB): 9731073
    created_at: '2025-11-22T03:12:30.266057'
    description: Extracts UniProtKB-to-ENSEMBL relationships from the ENSEMBL id-mapping
      file (babel_downloads/UniProtKB/idmapping.dat) file.
    name: build_protein_uniprotkb_ensemble_relationships()
    sources:
    - filename: babel_downloads/UniProtKB/idmapping.dat
      name: ENSEMBL
    type: concord
    url: ''
  get_umls_gene_protein_mappings:
    combined_from: []
    counts:
      concords:
        count_concords: 23036
        count_distinct_curies: 36787
        predicates:
          oio:closeMatch: 23036
        prefix_counts:
          oio:closeMatch(UMLS, UniProtKB): 23036
    created_at: '2025-11-21T19:44:09.834042'
    description: Download UMLS-UniProtKB protein mappings from https://raw.githubusercontent.com/cbizon/UMLS_UniProtKB/refs/heads/main/outputs/UMLS_UniProtKB.tsv
    name: get_umls_gene_protein_mappings
    sources:
    - name: UMLS-UniProtKB mappings
      type: download
      url: https://raw.githubusercontent.com/cbizon/UMLS_UniProtKB/refs/heads/main/outputs/UMLS_UniProtKB.tsv
    type: concord
    url: ''
  umls.build_sets():
  - combined_from: []
    counts:
      concords:
        count_concords: 15478
        count_distinct_curies: 27962
        predicates:
          eq: 15478
        prefix_counts:
          eq(NCIT, UMLS): 15478
    created_at: '2025-11-22T14:57:08.317639'
    description: 'umls.build_sets() using UMLS MRCONSO with prefixes: {''NCI'': ''NCIT''}
      with cui_prefix set to UMLS'
    name: umls.build_sets()
    sources:
    - name: MRCONSO
      type: UMLS
    type: concord
    url: ''
  - combined_from: []
    counts:
      concords:
        count_concords: 107917
        count_distinct_curies: 214664
        predicates:
          eq: 107917
        prefix_counts:
          eq(DRUGBANK, UMLS): 2447
          eq(MESH, UMLS): 105470
    created_at: '2025-11-22T14:57:09.068545'
    description: 'umls.build_sets() using UMLS MRCONSO with prefixes: {''MSH'': ''MESH'',
      ''DRUGBANK'': ''DRUGBANK''} with cui_prefix set to UMLS'
    name: umls.build_sets()
    sources:
    - name: MRCONSO
      type: UMLS
    type: concord
    url: ''
counts:
  cliques: 201744170
  eq_ids: 221490122
  property_sources: !!python/object/apply:collections.defaultdict
  - !!python/name:builtins.int ''
  synonyms: 201144233
created_at: '2025-11-27T06:30:18.496074'
description: ''
name: Protein.txt
sources: []
type: compendium
url: ''
