INFO snakemake.logging [2025-11-23T20:15:22+0000]: None
host: compute-13-3
INFO snakemake.logging [2025-11-23T20:15:22+0000]: host: compute-13-3
Building DAG of jobs...
INFO snakemake.logging [2025-11-23T20:15:22+0000]: Building DAG of jobs...
Using shell: /usr/bin/bash
INFO snakemake.logging [2025-11-23T20:15:22+0000]: Using shell: /usr/bin/bash
Provided remote nodes: 1
INFO snakemake.logging [2025-11-23T20:15:22+0000]: Provided remote nodes: 1
Select jobs to execute...
INFO snakemake.logging [2025-11-23T20:15:22+0000]: Select jobs to execute...
Execute 1 jobs...
INFO snakemake.logging [2025-11-23T20:15:22+0000]: Execute 1 jobs...

[Sun Nov 23 15:15:22 2025]
rule get_ensembl:
    output: babel_downloads/ENSEMBL, babel_downloads/ENSEMBL/BioMartDownloadComplete
    jobid: 0
    reason: Forced execution
    resources: mem_mb=64000, mem_mib=954, disk_mb=50000, disk_mib=47684, tmpdir=<TBD>, mem=64G, runtime=240, cpus_per_task=4
INFO snakemake.logging [2025-11-23T20:15:22+0000]:  Rule: get_ensembl, Jobid: 0
INFO snakemake.logging [2025-11-23T20:15:22+0000]: Shell command: None
INFO snakemake.logging [2025-11-23T20:15:25+0000]: None
host: compute-13-3
INFO snakemake.logging [2025-11-23T20:15:25+0000]: host: compute-13-3
Building DAG of jobs...
INFO snakemake.logging [2025-11-23T20:15:25+0000]: Building DAG of jobs...
Using shell: /usr/bin/bash
INFO snakemake.logging [2025-11-23T20:15:25+0000]: Using shell: /usr/bin/bash
Provided cores: 64
INFO snakemake.logging [2025-11-23T20:15:25+0000]: Provided cores: 64
Rules claiming more threads will be scaled down.
INFO snakemake.logging [2025-11-23T20:15:25+0000]: Rules claiming more threads will be scaled down.
Select jobs to execute...
INFO snakemake.logging [2025-11-23T20:15:25+0000]: Select jobs to execute...
Execute 1 jobs...
INFO snakemake.logging [2025-11-23T20:15:25+0000]: Execute 1 jobs...

[Sun Nov 23 15:15:25 2025]
localrule get_ensembl:
    output: babel_downloads/ENSEMBL, babel_downloads/ENSEMBL/BioMartDownloadComplete
    jobid: 0
    reason: Forced execution
    resources: mem_mb=64000, mem_mib=954, disk_mb=50000, disk_mib=47684, tmpdir=/projects/babel/runs/gaurav/babel-1.14-umls-level-0/babel_downloads/tmp, mem=64G, runtime=240, cpus_per_task=4
INFO snakemake.logging [2025-11-23T20:15:25+0000]:  Rule: get_ensembl, Jobid: 0
INFO snakemake.logging [2025-11-23T20:15:25+0000]: Shell command: None
INFO root [2025-11-23T20:15:29+0000]: Downloading ENSEMBL dataset mmulatta_gene_ensembl
INFO root [2025-11-23T20:15:30+0000]: Querying batch of 6 attributes for mmulatta_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:15:34+0000]: Querying batch of 3 attributes for mmulatta_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'gene_biotype']
INFO root [2025-11-23T20:15:36+0000]: Downloading ENSEMBL dataset eburgeri_gene_ensembl
INFO root [2025-11-23T20:15:36+0000]: Querying batch of 6 attributes for eburgeri_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'source', 'ensembl_peptide_id', 'external_gene_source']
INFO root [2025-11-23T20:15:38+0000]: Querying batch of 3 attributes for eburgeri_gene_ensembl (+ 'ensembl_gene_id'): ['description', 'zfin_id_id', 'gene_biotype']
INFO root [2025-11-23T20:15:42+0000]: Downloading ENSEMBL dataset ogarnettii_gene_ensembl
INFO root [2025-11-23T20:15:42+0000]: Querying batch of 6 attributes for ogarnettii_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:15:44+0000]: Querying batch of 3 attributes for ogarnettii_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'gene_biotype']
INFO root [2025-11-23T20:15:46+0000]: Downloading ENSEMBL dataset chircus_gene_ensembl
INFO root [2025-11-23T20:15:47+0000]: Querying batch of 6 attributes for chircus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:15:49+0000]: Querying batch of 3 attributes for chircus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'gene_biotype']
INFO root [2025-11-23T20:15:51+0000]: Downloading ENSEMBL dataset mcaroli_gene_ensembl
INFO root [2025-11-23T20:15:52+0000]: Querying batch of 6 attributes for mcaroli_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'mgi_id', 'entrezgene_id', 'source']
INFO root [2025-11-23T20:15:57+0000]: Querying batch of 4 attributes for mcaroli_gene_ensembl (+ 'ensembl_gene_id'): ['ensembl_peptide_id', 'external_gene_source', 'description', 'gene_biotype']
INFO root [2025-11-23T20:16:00+0000]: Downloading ENSEMBL dataset cdromedarius_gene_ensembl
INFO root [2025-11-23T20:16:01+0000]: Querying batch of 6 attributes for cdromedarius_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:16:04+0000]: Querying batch of 3 attributes for cdromedarius_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'gene_biotype']
INFO root [2025-11-23T20:16:05+0000]: Downloading ENSEMBL dataset mochrogaster_gene_ensembl
INFO root [2025-11-23T20:16:06+0000]: Querying batch of 6 attributes for mochrogaster_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'mgi_id', 'entrezgene_id', 'source']
INFO root [2025-11-23T20:16:08+0000]: Querying batch of 4 attributes for mochrogaster_gene_ensembl (+ 'ensembl_gene_id'): ['ensembl_peptide_id', 'external_gene_source', 'description', 'gene_biotype']
INFO root [2025-11-23T20:16:10+0000]: Downloading ENSEMBL dataset ggallus_gene_ensembl
INFO root [2025-11-23T20:16:11+0000]: Querying batch of 6 attributes for ggallus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:16:15+0000]: Querying batch of 3 attributes for ggallus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'gene_biotype']
INFO root [2025-11-23T20:16:17+0000]: Downloading ENSEMBL dataset cccarpio_gene_ensembl
INFO root [2025-11-23T20:16:18+0000]: Querying batch of 6 attributes for cccarpio_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:16:29+0000]: Querying batch of 4 attributes for cccarpio_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'zfin_id_id', 'gene_biotype']
INFO root [2025-11-23T20:16:32+0000]: Downloading ENSEMBL dataset nbrichardi_gene_ensembl
INFO root [2025-11-23T20:16:33+0000]: Querying batch of 6 attributes for nbrichardi_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:16:35+0000]: Querying batch of 4 attributes for nbrichardi_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'zfin_id_id', 'gene_biotype']
INFO root [2025-11-23T20:16:37+0000]: Downloading ENSEMBL dataset celegans_gene_ensembl
INFO root [2025-11-23T20:16:38+0000]: Querying batch of 6 attributes for celegans_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'wormbase_gene', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:16:42+0000]: Querying batch of 3 attributes for celegans_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'gene_biotype']
INFO root [2025-11-23T20:16:44+0000]: Downloading ENSEMBL dataset pcapensis_gene_ensembl
INFO root [2025-11-23T20:16:45+0000]: Querying batch of 6 attributes for pcapensis_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'entrezgene_id', 'source', 'ensembl_peptide_id', 'external_gene_source']
INFO root [2025-11-23T20:16:46+0000]: Querying batch of 2 attributes for pcapensis_gene_ensembl (+ 'ensembl_gene_id'): ['description', 'gene_biotype']
INFO root [2025-11-23T20:16:47+0000]: Downloading ENSEMBL dataset scaustralis_gene_ensembl
INFO root [2025-11-23T20:16:48+0000]: Querying batch of 6 attributes for scaustralis_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'source', 'ensembl_peptide_id', 'external_gene_source', 'description']
INFO root [2025-11-23T20:16:49+0000]: Querying batch of 1 attributes for scaustralis_gene_ensembl (+ 'ensembl_gene_id'): ['gene_biotype']
INFO root [2025-11-23T20:16:50+0000]: Downloading ENSEMBL dataset cgpicr_gene_ensembl
INFO root [2025-11-23T20:16:51+0000]: Querying batch of 6 attributes for cgpicr_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'mgi_id', 'entrezgene_id', 'source']
INFO root [2025-11-23T20:16:54+0000]: Querying batch of 4 attributes for cgpicr_gene_ensembl (+ 'ensembl_gene_id'): ['ensembl_peptide_id', 'external_gene_source', 'description', 'gene_biotype']
INFO root [2025-11-23T20:16:57+0000]: Downloading ENSEMBL dataset dleucas_gene_ensembl
INFO root [2025-11-23T20:16:58+0000]: Querying batch of 6 attributes for dleucas_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:17:00+0000]: Querying batch of 3 attributes for dleucas_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'gene_biotype']
INFO root [2025-11-23T20:17:01+0000]: Downloading ENSEMBL dataset mlucifugus_gene_ensembl
INFO root [2025-11-23T20:17:02+0000]: Querying batch of 6 attributes for mlucifugus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:17:04+0000]: Querying batch of 3 attributes for mlucifugus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'gene_biotype']
INFO root [2025-11-23T20:17:05+0000]: Downloading ENSEMBL dataset cmilii_gene_ensembl
INFO root [2025-11-23T20:17:06+0000]: Querying batch of 6 attributes for cmilii_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:17:11+0000]: Querying batch of 4 attributes for cmilii_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'zfin_id_id', 'gene_biotype']
INFO root [2025-11-23T20:17:12+0000]: Downloading ENSEMBL dataset oniloticus_gene_ensembl
INFO root [2025-11-23T20:17:14+0000]: Querying batch of 6 attributes for oniloticus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:17:18+0000]: Querying batch of 4 attributes for oniloticus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'zfin_id_id', 'gene_biotype']
INFO root [2025-11-23T20:17:20+0000]: Downloading ENSEMBL dataset cauratus_gene_ensembl
INFO root [2025-11-23T20:17:22+0000]: Querying batch of 6 attributes for cauratus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:18:13+0000]: Querying batch of 4 attributes for cauratus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'zfin_id_id', 'gene_biotype']
INFO root [2025-11-23T20:18:31+0000]: Downloading ENSEMBL dataset cimitator_gene_ensembl
INFO root [2025-11-23T20:18:34+0000]: Querying batch of 6 attributes for cimitator_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:18:37+0000]: Querying batch of 3 attributes for cimitator_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'gene_biotype']
INFO root [2025-11-23T20:18:38+0000]: Downloading ENSEMBL dataset llaticaudata_gene_ensembl
INFO root [2025-11-23T20:18:39+0000]: Querying batch of 6 attributes for llaticaudata_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'source', 'ensembl_peptide_id', 'external_gene_source']
INFO root [2025-11-23T20:18:41+0000]: Querying batch of 2 attributes for llaticaudata_gene_ensembl (+ 'ensembl_gene_id'): ['description', 'gene_biotype']
INFO root [2025-11-23T20:18:42+0000]: Downloading ENSEMBL dataset elucius_gene_ensembl
INFO root [2025-11-23T20:18:42+0000]: Downloading ENSEMBL dataset clanigera_gene_ensembl
INFO root [2025-11-23T20:18:43+0000]: Querying batch of 6 attributes for clanigera_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:18:45+0000]: Querying batch of 3 attributes for clanigera_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'gene_biotype']
INFO root [2025-11-23T20:18:47+0000]: Downloading ENSEMBL dataset gmorhua_gene_ensembl
INFO root [2025-11-23T20:18:47+0000]: Querying batch of 6 attributes for gmorhua_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:18:58+0000]: Querying batch of 4 attributes for gmorhua_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'zfin_id_id', 'gene_biotype']
INFO root [2025-11-23T20:19:02+0000]: Downloading ENSEMBL dataset tbelangeri_gene_ensembl
INFO root [2025-11-23T20:19:03+0000]: Querying batch of 6 attributes for tbelangeri_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'entrezgene_id', 'source', 'ensembl_peptide_id', 'external_gene_source']
INFO root [2025-11-23T20:19:04+0000]: Querying batch of 2 attributes for tbelangeri_gene_ensembl (+ 'ensembl_gene_id'): ['description', 'gene_biotype']
INFO root [2025-11-23T20:19:05+0000]: Downloading ENSEMBL dataset falbicollis_gene_ensembl
INFO root [2025-11-23T20:19:06+0000]: Querying batch of 6 attributes for falbicollis_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:19:09+0000]: Querying batch of 3 attributes for falbicollis_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'gene_biotype']
INFO root [2025-11-23T20:19:10+0000]: Downloading ENSEMBL dataset sscrofa_gene_ensembl
INFO root [2025-11-23T20:19:11+0000]: Querying batch of 6 attributes for sscrofa_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:19:15+0000]: Querying batch of 3 attributes for sscrofa_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'gene_biotype']
INFO root [2025-11-23T20:19:17+0000]: Downloading ENSEMBL dataset clumpus_gene_ensembl
INFO root [2025-11-23T20:19:18+0000]: Querying batch of 6 attributes for clumpus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:19:33+0000]: Querying batch of 4 attributes for clumpus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'zfin_id_id', 'gene_biotype']
INFO root [2025-11-23T20:19:36+0000]: Downloading ENSEMBL dataset otshawytscha_gene_ensembl
INFO root [2025-11-23T20:19:36+0000]: Downloading ENSEMBL dataset bbbison_gene_ensembl
INFO root [2025-11-23T20:19:37+0000]: Querying batch of 6 attributes for bbbison_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:19:39+0000]: Querying batch of 3 attributes for bbbison_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'gene_biotype']
INFO root [2025-11-23T20:20:10+0000]: Downloading ENSEMBL dataset pmarinus_gene_ensembl
INFO root [2025-11-23T20:20:12+0000]: Querying batch of 6 attributes for pmarinus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:20:23+0000]: Querying batch of 4 attributes for pmarinus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'zfin_id_id', 'gene_biotype']
INFO root [2025-11-23T20:20:25+0000]: Downloading ENSEMBL dataset cpbellii_gene_ensembl
INFO root [2025-11-23T20:20:26+0000]: Querying batch of 6 attributes for cpbellii_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:20:29+0000]: Querying batch of 3 attributes for cpbellii_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'gene_biotype']
INFO root [2025-11-23T20:20:33+0000]: Downloading ENSEMBL dataset sslandrace_gene_ensembl
INFO root [2025-11-23T20:20:34+0000]: Querying batch of 6 attributes for sslandrace_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:20:38+0000]: Querying batch of 3 attributes for sslandrace_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'gene_biotype']
INFO root [2025-11-23T20:20:39+0000]: Downloading ENSEMBL dataset bmusculus_gene_ensembl
INFO root [2025-11-23T20:20:40+0000]: Querying batch of 6 attributes for bmusculus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:20:43+0000]: Querying batch of 3 attributes for bmusculus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'gene_biotype']
INFO root [2025-11-23T20:20:44+0000]: Downloading ENSEMBL dataset sdumerili_gene_ensembl
INFO root [2025-11-23T20:20:45+0000]: Querying batch of 6 attributes for sdumerili_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:20:47+0000]: Querying batch of 4 attributes for sdumerili_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'zfin_id_id', 'gene_biotype']
INFO root [2025-11-23T20:20:49+0000]: Downloading ENSEMBL dataset bgrunniens_gene_ensembl
INFO root [2025-11-23T20:20:49+0000]: Querying batch of 6 attributes for bgrunniens_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'source', 'ensembl_peptide_id', 'external_gene_source']
INFO root [2025-11-23T20:21:01+0000]: Querying batch of 2 attributes for bgrunniens_gene_ensembl (+ 'ensembl_gene_id'): ['description', 'gene_biotype']
INFO root [2025-11-23T20:21:03+0000]: Downloading ENSEMBL dataset sswuzhishan_gene_ensembl
INFO root [2025-11-23T20:21:04+0000]: Querying batch of 6 attributes for sswuzhishan_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:21:07+0000]: Querying batch of 3 attributes for sswuzhishan_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'gene_biotype']
INFO root [2025-11-23T20:21:09+0000]: Downloading ENSEMBL dataset ppaniscus_gene_ensembl
INFO root [2025-11-23T20:21:10+0000]: Querying batch of 6 attributes for ppaniscus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:21:14+0000]: Querying batch of 3 attributes for ppaniscus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'gene_biotype']
INFO root [2025-11-23T20:21:15+0000]: Downloading ENSEMBL dataset ssjinhua_gene_ensembl
INFO root [2025-11-23T20:21:16+0000]: Querying batch of 6 attributes for ssjinhua_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:21:20+0000]: Querying batch of 3 attributes for ssjinhua_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'gene_biotype']
INFO root [2025-11-23T20:21:21+0000]: Downloading ENSEMBL dataset mfascicularis_gene_ensembl
INFO root [2025-11-23T20:21:22+0000]: Querying batch of 6 attributes for mfascicularis_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:21:27+0000]: Querying batch of 3 attributes for mfascicularis_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'gene_biotype']
INFO root [2025-11-23T20:21:28+0000]: Downloading ENSEMBL dataset mmurinus_gene_ensembl
INFO root [2025-11-23T20:21:29+0000]: Querying batch of 6 attributes for mmurinus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:21:41+0000]: Querying batch of 3 attributes for mmurinus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'gene_biotype']
INFO root [2025-11-23T20:21:42+0000]: Downloading ENSEMBL dataset sbboliviensis_gene_ensembl
INFO root [2025-11-23T20:21:43+0000]: Querying batch of 6 attributes for sbboliviensis_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:21:46+0000]: Querying batch of 3 attributes for sbboliviensis_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'gene_biotype']
INFO root [2025-11-23T20:21:47+0000]: Downloading ENSEMBL dataset amelanoleuca_gene_ensembl
INFO root [2025-11-23T20:21:48+0000]: Querying batch of 6 attributes for amelanoleuca_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:21:51+0000]: Querying batch of 3 attributes for amelanoleuca_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'gene_biotype']
INFO root [2025-11-23T20:21:53+0000]: Downloading ENSEMBL dataset btaurus_gene_ensembl
INFO root [2025-11-23T20:21:53+0000]: Querying batch of 6 attributes for btaurus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:21:58+0000]: Querying batch of 3 attributes for btaurus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'gene_biotype']
INFO root [2025-11-23T20:22:00+0000]: Downloading ENSEMBL dataset acitrinellus_gene_ensembl
INFO root [2025-11-23T20:22:01+0000]: Querying batch of 6 attributes for acitrinellus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'source', 'ensembl_peptide_id', 'external_gene_source']
INFO root [2025-11-23T20:22:03+0000]: Querying batch of 3 attributes for acitrinellus_gene_ensembl (+ 'ensembl_gene_id'): ['description', 'zfin_id_id', 'gene_biotype']
INFO root [2025-11-23T20:22:08+0000]: Downloading ENSEMBL dataset aplatyrhynchos_gene_ensembl
INFO root [2025-11-23T20:22:08+0000]: Querying batch of 6 attributes for aplatyrhynchos_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:22:10+0000]: Querying batch of 3 attributes for aplatyrhynchos_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'gene_biotype']
INFO root [2025-11-23T20:22:11+0000]: Downloading ENSEMBL dataset dclupeoides_gene_ensembl
INFO root [2025-11-23T20:22:12+0000]: Querying batch of 6 attributes for dclupeoides_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'mgi_id', 'entrezgene_id', 'source']
/projects/babel/runs/gaurav/babel-1.14-umls-level-0/.venv/lib/python3.13/site-packages/apybiomart/classes.py:389: DtypeWarning: Columns (3,4) have mixed types. Specify dtype option on import or set low_memory=False.
  result = pd.read_csv(io.StringIO(resp.text), sep="\t")
INFO root [2025-11-23T20:30:27+0000]: Querying batch of 5 attributes for dclupeoides_gene_ensembl (+ 'ensembl_gene_id'): ['ensembl_peptide_id', 'external_gene_source', 'description', 'zfin_id_id', 'gene_biotype']
INFO root [2025-11-23T20:30:56+0000]: Downloading ENSEMBL dataset mdomestica_gene_ensembl
INFO root [2025-11-23T20:30:58+0000]: Querying batch of 6 attributes for mdomestica_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:31:02+0000]: Querying batch of 3 attributes for mdomestica_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'gene_biotype']
INFO root [2025-11-23T20:31:03+0000]: Downloading ENSEMBL dataset lafricana_gene_ensembl
INFO root [2025-11-23T20:31:04+0000]: Querying batch of 6 attributes for lafricana_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:31:06+0000]: Querying batch of 3 attributes for lafricana_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'gene_biotype']
INFO root [2025-11-23T20:31:07+0000]: Downloading ENSEMBL dataset etelfairi_gene_ensembl
INFO root [2025-11-23T20:31:09+0000]: Querying batch of 6 attributes for etelfairi_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'entrezgene_id', 'source', 'ensembl_peptide_id', 'external_gene_source']
INFO root [2025-11-23T20:31:10+0000]: Querying batch of 2 attributes for etelfairi_gene_ensembl (+ 'ensembl_gene_id'): ['description', 'gene_biotype']
INFO root [2025-11-23T20:31:11+0000]: Downloading ENSEMBL dataset slucioperca_gene_ensembl
INFO root [2025-11-23T20:31:12+0000]: Querying batch of 6 attributes for slucioperca_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:31:17+0000]: Querying batch of 4 attributes for slucioperca_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'zfin_id_id', 'gene_biotype']
INFO root [2025-11-23T20:31:19+0000]: Downloading ENSEMBL dataset spunctatus_gene_ensembl
INFO root [2025-11-23T20:31:20+0000]: Querying batch of 6 attributes for spunctatus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'source', 'ensembl_peptide_id', 'external_gene_source']
INFO root [2025-11-23T20:31:21+0000]: Querying batch of 2 attributes for spunctatus_gene_ensembl (+ 'ensembl_gene_id'): ['description', 'gene_biotype']
INFO root [2025-11-23T20:31:22+0000]: Downloading ENSEMBL dataset nfurzeri_gene_ensembl
INFO root [2025-11-23T20:31:23+0000]: Querying batch of 6 attributes for nfurzeri_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:31:28+0000]: Querying batch of 4 attributes for nfurzeri_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'zfin_id_id', 'gene_biotype']
INFO root [2025-11-23T20:31:30+0000]: Downloading ENSEMBL dataset mnemestrina_gene_ensembl
INFO root [2025-11-23T20:31:30+0000]: Querying batch of 6 attributes for mnemestrina_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:31:34+0000]: Querying batch of 3 attributes for mnemestrina_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'gene_biotype']
INFO root [2025-11-23T20:31:36+0000]: Downloading ENSEMBL dataset mspretus_gene_ensembl
INFO root [2025-11-23T20:31:37+0000]: Querying batch of 6 attributes for mspretus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'mgi_id', 'source', 'ensembl_peptide_id', 'external_gene_source']
INFO root [2025-11-23T20:31:49+0000]: Querying batch of 2 attributes for mspretus_gene_ensembl (+ 'ensembl_gene_id'): ['description', 'gene_biotype']
INFO root [2025-11-23T20:32:03+0000]: Downloading ENSEMBL dataset trubripes_gene_ensembl
INFO root [2025-11-23T20:32:04+0000]: Querying batch of 6 attributes for trubripes_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:32:09+0000]: Querying batch of 4 attributes for trubripes_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'zfin_id_id', 'gene_biotype']
INFO root [2025-11-23T20:32:11+0000]: Downloading ENSEMBL dataset nvison_gene_ensembl
INFO root [2025-11-23T20:32:12+0000]: Querying batch of 6 attributes for nvison_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:32:15+0000]: Querying batch of 3 attributes for nvison_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'gene_biotype']
INFO root [2025-11-23T20:32:16+0000]: Downloading ENSEMBL dataset saraneus_gene_ensembl
INFO root [2025-11-23T20:32:17+0000]: Querying batch of 6 attributes for saraneus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'entrezgene_id', 'source', 'ensembl_peptide_id', 'external_gene_source']
INFO root [2025-11-23T20:32:18+0000]: Querying batch of 2 attributes for saraneus_gene_ensembl (+ 'ensembl_gene_id'): ['description', 'gene_biotype']
INFO root [2025-11-23T20:32:20+0000]: Downloading ENSEMBL dataset rroxellana_gene_ensembl
INFO root [2025-11-23T20:32:20+0000]: Querying batch of 6 attributes for rroxellana_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:32:24+0000]: Querying batch of 3 attributes for rroxellana_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'gene_biotype']
INFO root [2025-11-23T20:32:26+0000]: Downloading ENSEMBL dataset odegus_gene_ensembl
INFO root [2025-11-23T20:32:27+0000]: Querying batch of 6 attributes for odegus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:32:29+0000]: Querying batch of 3 attributes for odegus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'gene_biotype']
INFO root [2025-11-23T20:32:30+0000]: Downloading ENSEMBL dataset preticulata_gene_ensembl
INFO root [2025-11-23T20:32:31+0000]: Querying batch of 6 attributes for preticulata_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:32:43+0000]: Querying batch of 4 attributes for preticulata_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'zfin_id_id', 'gene_biotype']
INFO root [2025-11-23T20:32:44+0000]: Downloading ENSEMBL dataset ssbamei_gene_ensembl
INFO root [2025-11-23T20:32:45+0000]: Querying batch of 6 attributes for ssbamei_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:32:48+0000]: Querying batch of 3 attributes for ssbamei_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'gene_biotype']
INFO root [2025-11-23T20:32:50+0000]: Downloading ENSEMBL dataset easinus_gene_ensembl
INFO root [2025-11-23T20:32:51+0000]: Querying batch of 6 attributes for easinus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:32:55+0000]: Querying batch of 3 attributes for easinus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'gene_biotype']
INFO root [2025-11-23T20:32:56+0000]: Downloading ENSEMBL dataset cvariegatus_gene_ensembl
INFO root [2025-11-23T20:32:57+0000]: Querying batch of 6 attributes for cvariegatus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:33:00+0000]: Querying batch of 4 attributes for cvariegatus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'zfin_id_id', 'gene_biotype']
INFO root [2025-11-23T20:33:04+0000]: Downloading ENSEMBL dataset jjaculus_gene_ensembl
INFO root [2025-11-23T20:33:05+0000]: Querying batch of 6 attributes for jjaculus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'mgi_id', 'entrezgene_id', 'source']
INFO root [2025-11-23T20:33:09+0000]: Querying batch of 4 attributes for jjaculus_gene_ensembl (+ 'ensembl_gene_id'): ['ensembl_peptide_id', 'external_gene_source', 'description', 'gene_biotype']
INFO root [2025-11-23T20:33:11+0000]: Downloading ENSEMBL dataset apolyacanthus_gene_ensembl
INFO root [2025-11-23T20:33:12+0000]: Querying batch of 6 attributes for apolyacanthus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:33:15+0000]: Querying batch of 4 attributes for apolyacanthus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'zfin_id_id', 'gene_biotype']
INFO root [2025-11-23T20:33:19+0000]: Downloading ENSEMBL dataset pmajor_gene_ensembl
INFO root [2025-11-23T20:33:20+0000]: Querying batch of 6 attributes for pmajor_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'entrezgene_id', 'source', 'ensembl_peptide_id', 'external_gene_source']
INFO root [2025-11-23T20:33:22+0000]: Querying batch of 2 attributes for pmajor_gene_ensembl (+ 'ensembl_gene_id'): ['description', 'gene_biotype']
INFO root [2025-11-23T20:33:23+0000]: Downloading ENSEMBL dataset ojavanicus_gene_ensembl
INFO root [2025-11-23T20:33:24+0000]: Querying batch of 6 attributes for ojavanicus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'source', 'ensembl_peptide_id', 'external_gene_source']
INFO root [2025-11-23T20:33:27+0000]: Querying batch of 3 attributes for ojavanicus_gene_ensembl (+ 'ensembl_gene_id'): ['description', 'zfin_id_id', 'gene_biotype']
INFO root [2025-11-23T20:33:28+0000]: Downloading ENSEMBL dataset loculatus_gene_ensembl
INFO root [2025-11-23T20:33:29+0000]: Querying batch of 6 attributes for loculatus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:33:31+0000]: Querying batch of 4 attributes for loculatus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'zfin_id_id', 'gene_biotype']
INFO root [2025-11-23T20:33:33+0000]: Downloading ENSEMBL dataset xmaculatus_gene_ensembl
INFO root [2025-11-23T20:33:34+0000]: Querying batch of 6 attributes for xmaculatus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:33:36+0000]: Querying batch of 4 attributes for xmaculatus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'zfin_id_id', 'gene_biotype']
INFO root [2025-11-23T20:33:38+0000]: Downloading ENSEMBL dataset ngalili_gene_ensembl
INFO root [2025-11-23T20:33:39+0000]: Querying batch of 6 attributes for ngalili_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'mgi_id', 'entrezgene_id', 'source']
INFO root [2025-11-23T20:33:43+0000]: Querying batch of 4 attributes for ngalili_gene_ensembl (+ 'ensembl_gene_id'): ['ensembl_peptide_id', 'external_gene_source', 'description', 'gene_biotype']
INFO root [2025-11-23T20:33:45+0000]: Downloading ENSEMBL dataset nleucogenys_gene_ensembl
INFO root [2025-11-23T20:33:46+0000]: Querying batch of 6 attributes for nleucogenys_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:33:49+0000]: Querying batch of 3 attributes for nleucogenys_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'gene_biotype']
INFO root [2025-11-23T20:33:50+0000]: Downloading ENSEMBL dataset oprinceps_gene_ensembl
INFO root [2025-11-23T20:33:52+0000]: Querying batch of 6 attributes for oprinceps_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'entrezgene_id', 'source', 'ensembl_peptide_id', 'external_gene_source']
INFO root [2025-11-23T20:33:53+0000]: Querying batch of 2 attributes for oprinceps_gene_ensembl (+ 'ensembl_gene_id'): ['description', 'gene_biotype']
INFO root [2025-11-23T20:33:58+0000]: Downloading ENSEMBL dataset bmutus_gene_ensembl
INFO root [2025-11-23T20:33:59+0000]: Querying batch of 6 attributes for bmutus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:34:01+0000]: Querying batch of 3 attributes for bmutus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'gene_biotype']
INFO root [2025-11-23T20:34:03+0000]: Downloading ENSEMBL dataset mzebra_gene_ensembl
INFO root [2025-11-23T20:34:04+0000]: Querying batch of 6 attributes for mzebra_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:34:06+0000]: Querying batch of 4 attributes for mzebra_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'zfin_id_id', 'gene_biotype']
INFO root [2025-11-23T20:34:08+0000]: Downloading ENSEMBL dataset sharrisii_gene_ensembl
INFO root [2025-11-23T20:34:12+0000]: Querying batch of 6 attributes for sharrisii_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:34:15+0000]: Querying batch of 3 attributes for sharrisii_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'gene_biotype']
INFO root [2025-11-23T20:34:16+0000]: Downloading ENSEMBL dataset drerio_gene_ensembl
INFO root [2025-11-23T20:34:17+0000]: Querying batch of 6 attributes for drerio_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:34:24+0000]: Querying batch of 4 attributes for drerio_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'zfin_id_id', 'gene_biotype']
INFO root [2025-11-23T20:34:29+0000]: Downloading ENSEMBL dataset sformosus_gene_ensembl
INFO root [2025-11-23T20:34:30+0000]: Querying batch of 6 attributes for sformosus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:34:34+0000]: Querying batch of 4 attributes for sformosus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'zfin_id_id', 'gene_biotype']
INFO root [2025-11-23T20:34:37+0000]: Downloading ENSEMBL dataset hburtoni_gene_ensembl
INFO root [2025-11-23T20:34:38+0000]: Querying batch of 6 attributes for hburtoni_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:34:50+0000]: Querying batch of 4 attributes for hburtoni_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'zfin_id_id', 'gene_biotype']
INFO root [2025-11-23T20:34:54+0000]: Downloading ENSEMBL dataset dordii_gene_ensembl
INFO root [2025-11-23T20:34:55+0000]: Querying batch of 6 attributes for dordii_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'mgi_id', 'entrezgene_id', 'source']
INFO root [2025-11-23T20:34:58+0000]: Querying batch of 4 attributes for dordii_gene_ensembl (+ 'ensembl_gene_id'): ['ensembl_peptide_id', 'external_gene_source', 'description', 'gene_biotype']
INFO root [2025-11-23T20:34:59+0000]: Downloading ENSEMBL dataset gfortis_gene_ensembl
INFO root [2025-11-23T20:35:00+0000]: Querying batch of 6 attributes for gfortis_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:35:02+0000]: Querying batch of 3 attributes for gfortis_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'gene_biotype']
INFO root [2025-11-23T20:35:03+0000]: Downloading ENSEMBL dataset cldingo_gene_ensembl
INFO root [2025-11-23T20:35:07+0000]: Querying batch of 6 attributes for cldingo_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:35:09+0000]: Querying batch of 3 attributes for cldingo_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'gene_biotype']
INFO root [2025-11-23T20:35:11+0000]: Downloading ENSEMBL dataset ptaltaica_gene_ensembl
INFO root [2025-11-23T20:35:12+0000]: Querying batch of 6 attributes for ptaltaica_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'source', 'ensembl_peptide_id', 'external_gene_source']
INFO root [2025-11-23T20:35:18+0000]: Querying batch of 2 attributes for ptaltaica_gene_ensembl (+ 'ensembl_gene_id'): ['description', 'gene_biotype']
INFO root [2025-11-23T20:35:19+0000]: Downloading ENSEMBL dataset atestudineus_gene_ensembl
INFO root [2025-11-23T20:35:20+0000]: Querying batch of 6 attributes for atestudineus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'mgi_id', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:35:24+0000]: Querying batch of 4 attributes for atestudineus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'zfin_id_id', 'gene_biotype']
INFO root [2025-11-23T20:35:26+0000]: Downloading ENSEMBL dataset csavignyi_gene_ensembl
INFO root [2025-11-23T20:35:27+0000]: Querying batch of 6 attributes for csavignyi_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'entrezgene_id', 'source', 'ensembl_peptide_id', 'external_gene_source']
INFO root [2025-11-23T20:35:28+0000]: Querying batch of 2 attributes for csavignyi_gene_ensembl (+ 'ensembl_gene_id'): ['description', 'gene_biotype']
INFO root [2025-11-23T20:35:29+0000]: Downloading ENSEMBL dataset ssrongchang_gene_ensembl
INFO root [2025-11-23T20:35:30+0000]: Querying batch of 6 attributes for ssrongchang_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:35:33+0000]: Querying batch of 3 attributes for ssrongchang_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'gene_biotype']
INFO root [2025-11-23T20:35:35+0000]: Downloading ENSEMBL dataset gevgoodei_gene_ensembl
INFO root [2025-11-23T20:35:36+0000]: Querying batch of 6 attributes for gevgoodei_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:35:38+0000]: Querying batch of 3 attributes for gevgoodei_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'gene_biotype']
INFO root [2025-11-23T20:35:40+0000]: Downloading ENSEMBL dataset acarolinensis_gene_ensembl
INFO root [2025-11-23T20:35:41+0000]: Querying batch of 6 attributes for acarolinensis_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:35:47+0000]: Querying batch of 3 attributes for acarolinensis_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'gene_biotype']
INFO root [2025-11-23T20:35:48+0000]: Downloading ENSEMBL dataset scerevisiae_gene_ensembl
INFO root [2025-11-23T20:35:49+0000]: Querying batch of 6 attributes for scerevisiae_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'sgd_gene', 'entrezgene_id', 'source']
INFO root [2025-11-23T20:35:51+0000]: Querying batch of 4 attributes for scerevisiae_gene_ensembl (+ 'ensembl_gene_id'): ['ensembl_peptide_id', 'external_gene_source', 'description', 'gene_biotype']
INFO root [2025-11-23T20:35:52+0000]: Downloading ENSEMBL dataset ptroglodytes_gene_ensembl
INFO root [2025-11-23T20:35:53+0000]: Querying batch of 6 attributes for ptroglodytes_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:35:57+0000]: Querying batch of 3 attributes for ptroglodytes_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'gene_biotype']
INFO root [2025-11-23T20:35:59+0000]: Downloading ENSEMBL dataset catys_gene_ensembl
INFO root [2025-11-23T20:36:00+0000]: Querying batch of 6 attributes for catys_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:36:03+0000]: Querying batch of 3 attributes for catys_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'gene_biotype']
INFO root [2025-11-23T20:36:05+0000]: Downloading ENSEMBL dataset ggorilla_gene_ensembl
INFO root [2025-11-23T20:36:06+0000]: Querying batch of 6 attributes for ggorilla_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:36:17+0000]: Querying batch of 3 attributes for ggorilla_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'gene_biotype']
INFO root [2025-11-23T20:36:19+0000]: Downloading ENSEMBL dataset ecaballus_gene_ensembl
INFO root [2025-11-23T20:36:20+0000]: Querying batch of 6 attributes for ecaballus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:36:34+0000]: Querying batch of 3 attributes for ecaballus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'gene_biotype']
INFO root [2025-11-23T20:36:36+0000]: Downloading ENSEMBL dataset csemilaevis_gene_ensembl
INFO root [2025-11-23T20:36:37+0000]: Querying batch of 6 attributes for csemilaevis_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:36:39+0000]: Querying batch of 4 attributes for csemilaevis_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'zfin_id_id', 'gene_biotype']
INFO root [2025-11-23T20:36:41+0000]: Downloading ENSEMBL dataset pmbairdii_gene_ensembl
INFO root [2025-11-23T20:36:41+0000]: Querying batch of 6 attributes for pmbairdii_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'mgi_id', 'entrezgene_id', 'source']
INFO root [2025-11-23T20:36:47+0000]: Querying batch of 4 attributes for pmbairdii_gene_ensembl (+ 'ensembl_gene_id'): ['ensembl_peptide_id', 'external_gene_source', 'description', 'gene_biotype']
INFO root [2025-11-23T20:36:48+0000]: Downloading ENSEMBL dataset pvampyrus_gene_ensembl
INFO root [2025-11-23T20:36:49+0000]: Querying batch of 6 attributes for pvampyrus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:36:51+0000]: Querying batch of 3 attributes for pvampyrus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'gene_biotype']
INFO root [2025-11-23T20:36:52+0000]: Downloading ENSEMBL dataset uparryii_gene_ensembl
INFO root [2025-11-23T20:36:53+0000]: Querying batch of 6 attributes for uparryii_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:36:56+0000]: Querying batch of 3 attributes for uparryii_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'gene_biotype']
INFO root [2025-11-23T20:36:57+0000]: Downloading ENSEMBL dataset mmonoceros_gene_ensembl
INFO root [2025-11-23T20:36:58+0000]: Querying batch of 6 attributes for mmonoceros_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:37:00+0000]: Querying batch of 3 attributes for mmonoceros_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'gene_biotype']
INFO root [2025-11-23T20:37:02+0000]: Downloading ENSEMBL dataset hgfemale_gene_ensembl
INFO root [2025-11-23T20:37:02+0000]: Downloading ENSEMBL dataset scanaria_gene_ensembl
INFO root [2025-11-23T20:37:03+0000]: Querying batch of 6 attributes for scanaria_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:37:04+0000]: Querying batch of 3 attributes for scanaria_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'gene_biotype']
INFO root [2025-11-23T20:37:06+0000]: Downloading ENSEMBL dataset eeuropaeus_gene_ensembl
INFO root [2025-11-23T20:37:07+0000]: Querying batch of 6 attributes for eeuropaeus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:37:09+0000]: Querying batch of 3 attributes for eeuropaeus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'gene_biotype']
INFO root [2025-11-23T20:37:10+0000]: Downloading ENSEMBL dataset platipinna_gene_ensembl
INFO root [2025-11-23T20:37:11+0000]: Querying batch of 6 attributes for platipinna_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:37:14+0000]: Querying batch of 4 attributes for platipinna_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'zfin_id_id', 'gene_biotype']
INFO root [2025-11-23T20:37:18+0000]: Downloading ENSEMBL dataset clfamiliaris_gene_ensembl
INFO root [2025-11-23T20:37:19+0000]: Querying batch of 6 attributes for clfamiliaris_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:37:22+0000]: Querying batch of 3 attributes for clfamiliaris_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'gene_biotype']
INFO root [2025-11-23T20:37:24+0000]: Downloading ENSEMBL dataset vursinus_gene_ensembl
INFO root [2025-11-23T20:37:25+0000]: Querying batch of 6 attributes for vursinus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:37:27+0000]: Querying batch of 3 attributes for vursinus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'gene_biotype']
INFO root [2025-11-23T20:37:29+0000]: Downloading ENSEMBL dataset nnaja_gene_ensembl
INFO root [2025-11-23T20:37:30+0000]: Querying batch of 6 attributes for nnaja_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'source', 'ensembl_peptide_id', 'external_gene_source']
INFO root [2025-11-23T20:37:31+0000]: Querying batch of 2 attributes for nnaja_gene_ensembl (+ 'ensembl_gene_id'): ['description', 'gene_biotype']
INFO root [2025-11-23T20:37:37+0000]: Downloading ENSEMBL dataset ssberkshire_gene_ensembl
INFO root [2025-11-23T20:37:38+0000]: Querying batch of 6 attributes for ssberkshire_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:37:41+0000]: Querying batch of 3 attributes for ssberkshire_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'gene_biotype']
INFO root [2025-11-23T20:37:43+0000]: Downloading ENSEMBL dataset psinensis_gene_ensembl
INFO root [2025-11-23T20:37:44+0000]: Querying batch of 6 attributes for psinensis_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:37:45+0000]: Querying batch of 3 attributes for psinensis_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'gene_biotype']
INFO root [2025-11-23T20:37:46+0000]: Downloading ENSEMBL dataset dmelanogaster_gene_ensembl
INFO root [2025-11-23T20:37:48+0000]: Querying batch of 6 attributes for dmelanogaster_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'flybase_gene_id', 'entrezgene_id', 'source']
INFO root [2025-11-23T20:38:07+0000]: Querying batch of 4 attributes for dmelanogaster_gene_ensembl (+ 'ensembl_gene_id'): ['ensembl_peptide_id', 'external_gene_source', 'description', 'gene_biotype']
INFO root [2025-11-23T20:38:13+0000]: Downloading ENSEMBL dataset ssusmarc_gene_ensembl
INFO root [2025-11-23T20:38:14+0000]: Querying batch of 6 attributes for ssusmarc_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:38:17+0000]: Querying batch of 3 attributes for ssusmarc_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'gene_biotype']
INFO root [2025-11-23T20:38:18+0000]: Downloading ENSEMBL dataset cintestinalis_gene_ensembl
INFO root [2025-11-23T20:38:19+0000]: Querying batch of 6 attributes for cintestinalis_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:38:21+0000]: Querying batch of 3 attributes for cintestinalis_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'gene_biotype']
INFO root [2025-11-23T20:38:22+0000]: Downloading ENSEMBL dataset hcomes_gene_ensembl
INFO root [2025-11-23T20:38:23+0000]: Querying batch of 6 attributes for hcomes_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:38:26+0000]: Querying batch of 4 attributes for hcomes_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'zfin_id_id', 'gene_biotype']
INFO root [2025-11-23T20:38:29+0000]: Downloading ENSEMBL dataset mpfuro_gene_ensembl
INFO root [2025-11-23T20:38:30+0000]: Querying batch of 6 attributes for mpfuro_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:38:33+0000]: Querying batch of 3 attributes for mpfuro_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'gene_biotype']
INFO root [2025-11-23T20:38:34+0000]: Downloading ENSEMBL dataset psimus_gene_ensembl
INFO root [2025-11-23T20:38:35+0000]: Querying batch of 6 attributes for psimus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'source', 'ensembl_peptide_id', 'external_gene_source']
INFO root [2025-11-23T20:38:37+0000]: Querying batch of 2 attributes for psimus_gene_ensembl (+ 'ensembl_gene_id'): ['description', 'gene_biotype']
INFO root [2025-11-23T20:38:39+0000]: Downloading ENSEMBL dataset amexicanus_gene_ensembl
INFO root [2025-11-23T20:38:40+0000]: Querying batch of 6 attributes for amexicanus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:38:47+0000]: Querying batch of 4 attributes for amexicanus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'zfin_id_id', 'gene_biotype']
INFO root [2025-11-23T20:38:49+0000]: Downloading ENSEMBL dataset tnigroviridis_gene_ensembl
INFO root [2025-11-23T20:38:53+0000]: Querying batch of 6 attributes for tnigroviridis_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:38:55+0000]: Querying batch of 4 attributes for tnigroviridis_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'zfin_id_id', 'gene_biotype']
INFO root [2025-11-23T20:38:56+0000]: Downloading ENSEMBL dataset ssalar_gene_ensembl
INFO root [2025-11-23T20:38:57+0000]: Querying batch of 6 attributes for ssalar_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
/projects/babel/runs/gaurav/babel-1.14-umls-level-0/.venv/lib/python3.13/site-packages/apybiomart/classes.py:389: DtypeWarning: Columns (2,3) have mixed types. Specify dtype option on import or set low_memory=False.
  result = pd.read_csv(io.StringIO(resp.text), sep="\t")
INFO root [2025-11-23T20:42:30+0000]: Querying batch of 4 attributes for ssalar_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'zfin_id_id', 'gene_biotype']
INFO root [2025-11-23T20:42:48+0000]: Downloading ENSEMBL dataset dlabrax_gene_ensembl
INFO root [2025-11-23T20:42:49+0000]: Querying batch of 6 attributes for dlabrax_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:42:53+0000]: Querying batch of 4 attributes for dlabrax_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'zfin_id_id', 'gene_biotype']
INFO root [2025-11-23T20:42:55+0000]: Downloading ENSEMBL dataset pformosa_gene_ensembl
INFO root [2025-11-23T20:42:56+0000]: Querying batch of 6 attributes for pformosa_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:42:58+0000]: Querying batch of 4 attributes for pformosa_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'zfin_id_id', 'gene_biotype']
INFO root [2025-11-23T20:43:00+0000]: Downloading ENSEMBL dataset ecalabaricus_gene_ensembl
INFO root [2025-11-23T20:43:01+0000]: Querying batch of 6 attributes for ecalabaricus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:43:13+0000]: Querying batch of 4 attributes for ecalabaricus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'zfin_id_id', 'gene_biotype']
INFO root [2025-11-23T20:43:14+0000]: Downloading ENSEMBL dataset sldorsalis_gene_ensembl
INFO root [2025-11-23T20:43:16+0000]: Querying batch of 6 attributes for sldorsalis_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:43:18+0000]: Querying batch of 4 attributes for sldorsalis_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'zfin_id_id', 'gene_biotype']
INFO root [2025-11-23T20:43:30+0000]: Downloading ENSEMBL dataset lcalcarifer_gene_ensembl
INFO root [2025-11-23T20:43:31+0000]: Querying batch of 6 attributes for lcalcarifer_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:43:36+0000]: Querying batch of 4 attributes for lcalcarifer_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'zfin_id_id', 'gene_biotype']
INFO root [2025-11-23T20:43:39+0000]: Downloading ENSEMBL dataset tctriunguis_gene_ensembl
INFO root [2025-11-23T20:43:40+0000]: Querying batch of 6 attributes for tctriunguis_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:43:42+0000]: Querying batch of 3 attributes for tctriunguis_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'gene_biotype']
INFO root [2025-11-23T20:43:43+0000]: Downloading ENSEMBL dataset vpacos_gene_ensembl
INFO root [2025-11-23T20:43:45+0000]: Querying batch of 6 attributes for vpacos_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:43:46+0000]: Querying batch of 3 attributes for vpacos_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'gene_biotype']
INFO root [2025-11-23T20:43:47+0000]: Downloading ENSEMBL dataset ocuniculus_gene_ensembl
INFO root [2025-11-23T20:43:48+0000]: Querying batch of 6 attributes for ocuniculus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:43:51+0000]: Querying batch of 3 attributes for ocuniculus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'gene_biotype']
INFO root [2025-11-23T20:43:52+0000]: Downloading ENSEMBL dataset rferrumequinum_gene_ensembl
INFO root [2025-11-23T20:43:53+0000]: Querying batch of 6 attributes for rferrumequinum_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:43:56+0000]: Querying batch of 3 attributes for rferrumequinum_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'gene_biotype']
INFO root [2025-11-23T20:43:57+0000]: Downloading ENSEMBL dataset fcatus_gene_ensembl
INFO root [2025-11-23T20:43:58+0000]: Querying batch of 6 attributes for fcatus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'mgi_id', 'entrezgene_id', 'source']
INFO root [2025-11-23T20:44:01+0000]: Querying batch of 5 attributes for fcatus_gene_ensembl (+ 'ensembl_gene_id'): ['ensembl_peptide_id', 'external_gene_source', 'description', 'zfin_id_id', 'gene_biotype']
INFO root [2025-11-23T20:44:05+0000]: Downloading ENSEMBL dataset pnattereri_gene_ensembl
INFO root [2025-11-23T20:44:06+0000]: Querying batch of 6 attributes for pnattereri_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'mgi_id', 'entrezgene_id', 'source']
INFO root [2025-11-23T20:44:08+0000]: Querying batch of 5 attributes for pnattereri_gene_ensembl (+ 'ensembl_gene_id'): ['ensembl_peptide_id', 'external_gene_source', 'description', 'zfin_id_id', 'gene_biotype']
INFO root [2025-11-23T20:44:13+0000]: Downloading ENSEMBL dataset pcatodon_gene_ensembl
INFO root [2025-11-23T20:44:13+0000]: Querying batch of 6 attributes for pcatodon_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:44:16+0000]: Querying batch of 3 attributes for pcatodon_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'gene_biotype']
INFO root [2025-11-23T20:44:17+0000]: Downloading ENSEMBL dataset kmarmoratus_gene_ensembl
INFO root [2025-11-23T20:44:18+0000]: Querying batch of 6 attributes for kmarmoratus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:44:20+0000]: Querying batch of 4 attributes for kmarmoratus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'zfin_id_id', 'gene_biotype']
INFO root [2025-11-23T20:44:21+0000]: Downloading ENSEMBL dataset pabelii_gene_ensembl
INFO root [2025-11-23T20:44:22+0000]: Querying batch of 6 attributes for pabelii_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:44:25+0000]: Querying batch of 3 attributes for pabelii_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'gene_biotype']
INFO root [2025-11-23T20:44:27+0000]: Downloading ENSEMBL dataset mauratus_gene_ensembl
INFO root [2025-11-23T20:44:28+0000]: Querying batch of 6 attributes for mauratus_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'mgi_id', 'entrezgene_id', 'source']
INFO root [2025-11-23T20:44:30+0000]: Querying batch of 4 attributes for mauratus_gene_ensembl (+ 'ensembl_gene_id'): ['ensembl_peptide_id', 'external_gene_source', 'description', 'gene_biotype']
INFO root [2025-11-23T20:44:32+0000]: Downloading ENSEMBL dataset acchrysaetos_gene_ensembl
INFO root [2025-11-23T20:44:32+0000]: Querying batch of 6 attributes for acchrysaetos_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
INFO root [2025-11-23T20:44:34+0000]: Querying batch of 3 attributes for acchrysaetos_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_source', 'description', 'gene_biotype']
INFO root [2025-11-23T20:44:36+0000]: Downloading ENSEMBL dataset omykiss_gene_ensembl
INFO root [2025-11-23T20:44:36+0000]: Querying batch of 6 attributes for omykiss_gene_ensembl (+ 'ensembl_gene_id'): ['external_gene_name', 'chromosome_name', 'external_synonym', 'entrezgene_id', 'source', 'ensembl_peptide_id']
srun: Job step aborted: Waiting up to 32 seconds for job step to finish.
[2025-11-23T19:15:20.034] error: *** STEP 45979.0 ON compute-13-3 CANCELLED AT 2025-11-23T19:15:20 DUE TO TIME LIMIT ***
[2025-11-23T19:15:20.034] error: *** JOB 45979 ON compute-13-3 CANCELLED AT 2025-11-23T19:15:20 DUE TO TIME LIMIT ***
Will exit after finishing currently running jobs (scheduler).
INFO snakemake.logging [2025-11-24T00:15:20+0000]: Will exit after finishing currently running jobs (scheduler).
Will exit after finishing currently running jobs (scheduler).
INFO snakemake.logging [2025-11-24T00:15:20+0000]: Will exit after finishing currently running jobs (scheduler).