INFO snakemake.logging [2025-11-28T22:06:44+0000]: None
host: compute-13-1
INFO snakemake.logging [2025-11-28T22:06:44+0000]: host: compute-13-1
Building DAG of jobs...
INFO snakemake.logging [2025-11-28T22:06:44+0000]: Building DAG of jobs...
Using shell: /usr/bin/bash
INFO snakemake.logging [2025-11-28T22:06:44+0000]: Using shell: /usr/bin/bash
Provided remote nodes: 1
INFO snakemake.logging [2025-11-28T22:06:44+0000]: Provided remote nodes: 1
Select jobs to execute...
INFO snakemake.logging [2025-11-28T22:06:44+0000]: Select jobs to execute...
Execute 1 jobs...
INFO snakemake.logging [2025-11-28T22:06:44+0000]: Execute 1 jobs...

[Fri Nov 28 17:06:44 2025]
rule protein:
    input: babel_outputs/reports/protein_completeness.txt, babel_outputs/synonyms/Protein.txt, babel_outputs/reports/Protein.txt
    output: babel_outputs/synonyms/Protein.txt.gz, babel_outputs/reports/protein_done
    jobid: 0
    reason: Forced execution
    resources: mem_mb=64000, mem_mib=7630, disk_mb=208003, disk_mib=198368, tmpdir=<TBD>, mem=64G, runtime=120, cpus_per_task=6, timeout=4h
INFO snakemake.logging [2025-11-28T22:06:44+0000]:  Rule: protein, Jobid: 0
INFO snakemake.logging [2025-11-28T22:06:44+0000]: Shell command: None
INFO snakemake.logging [2025-11-28T22:06:48+0000]: None
host: compute-13-1
INFO snakemake.logging [2025-11-28T22:06:48+0000]: host: compute-13-1
Building DAG of jobs...
INFO snakemake.logging [2025-11-28T22:06:48+0000]: Building DAG of jobs...
Using shell: /usr/bin/bash
INFO snakemake.logging [2025-11-28T22:06:48+0000]: Using shell: /usr/bin/bash
Provided cores: 64
INFO snakemake.logging [2025-11-28T22:06:48+0000]: Provided cores: 64
Rules claiming more threads will be scaled down.
INFO snakemake.logging [2025-11-28T22:06:48+0000]: Rules claiming more threads will be scaled down.
Select jobs to execute...
INFO snakemake.logging [2025-11-28T22:06:48+0000]: Select jobs to execute...
Execute 1 jobs...
INFO snakemake.logging [2025-11-28T22:06:48+0000]: Execute 1 jobs...

[Fri Nov 28 17:06:48 2025]
localrule protein:
    input: babel_outputs/reports/protein_completeness.txt, babel_outputs/synonyms/Protein.txt, babel_outputs/reports/Protein.txt
    output: babel_outputs/synonyms/Protein.txt.gz, babel_outputs/reports/protein_done
    jobid: 0
    reason: Forced execution
    resources: mem_mb=64000, mem_mib=7630, disk_mb=208003, disk_mib=198368, tmpdir=/projects/babel/runs/gaurav/babel-1.14-umls-level-0/babel_downloads/tmp, mem=64G, runtime=120, cpus_per_task=6, timeout=4h
INFO snakemake.logging [2025-11-28T22:06:48+0000]:  Rule: protein, Jobid: 0
INFO snakemake.logging [2025-11-28T22:06:48+0000]: Shell command: None
gzip_files: Compressing: babel_outputs/synonyms/Protein.txt
INFO src.snakefiles.util [2025-11-28T22:06:48+0000]: Compressing: babel_outputs/synonyms/Protein.txt
[2025-11-28T19:06:58.038] error: *** STEP 48471.0 ON compute-13-1 CANCELLED AT 2025-11-28T19:06:58 DUE TO TIME LIMIT ***
[2025-11-28T19:06:58.038] error: *** JOB 48471 ON compute-13-1 CANCELLED AT 2025-11-28T19:06:58 DUE TO TIME LIMIT ***
srun: Job step aborted: Waiting up to 32 seconds for job step to finish.