INFO snakemake.logging [2025-11-22T19:56:09+0000]: None
host: compute-13-2
INFO snakemake.logging [2025-11-22T19:56:09+0000]: host: compute-13-2
Building DAG of jobs...
INFO snakemake.logging [2025-11-22T19:56:09+0000]: Building DAG of jobs...
Using shell: /usr/bin/bash
INFO snakemake.logging [2025-11-22T19:56:09+0000]: Using shell: /usr/bin/bash
Provided remote nodes: 1
INFO snakemake.logging [2025-11-22T19:56:09+0000]: Provided remote nodes: 1
Select jobs to execute...
INFO snakemake.logging [2025-11-22T19:56:09+0000]: Select jobs to execute...
Execute 1 jobs...
INFO snakemake.logging [2025-11-22T19:56:09+0000]: Execute 1 jobs...

[Sat Nov 22 14:56:09 2025]
rule generate_pubmed_concords:
    input: babel_downloads/PubMed/verified, babel_downloads/PubMed/baseline, babel_downloads/PubMed/updatefiles
    output: babel_downloads/PubMed/titles.tsv, babel_downloads/PubMed/statuses.jsonl.gz, babel_outputs/intermediate/publications/ids/PMID, babel_outputs/intermediate/publications/concords/PMID_DOI, babel_outputs/intermediate/publications/concords/metadata.yaml
    jobid: 0
    reason: Forced execution
    resources: mem_mb=64000, mem_mib=954, disk_mb=1000, disk_mib=954, tmpdir=<TBD>, mem=64G, runtime=120, cpus_per_task=4
INFO snakemake.logging [2025-11-22T19:56:09+0000]:  Rule: generate_pubmed_concords, Jobid: 0
INFO snakemake.logging [2025-11-22T19:56:09+0000]: Shell command: None
INFO snakemake.logging [2025-11-22T19:56:13+0000]: None
host: compute-13-2
INFO snakemake.logging [2025-11-22T19:56:13+0000]: host: compute-13-2
Building DAG of jobs...
INFO snakemake.logging [2025-11-22T19:56:13+0000]: Building DAG of jobs...
Using shell: /usr/bin/bash
INFO snakemake.logging [2025-11-22T19:56:13+0000]: Using shell: /usr/bin/bash
Provided cores: 64
INFO snakemake.logging [2025-11-22T19:56:13+0000]: Provided cores: 64
Rules claiming more threads will be scaled down.
INFO snakemake.logging [2025-11-22T19:56:13+0000]: Rules claiming more threads will be scaled down.
Select jobs to execute...
INFO snakemake.logging [2025-11-22T19:56:13+0000]: Select jobs to execute...
Execute 1 jobs...
INFO snakemake.logging [2025-11-22T19:56:13+0000]: Execute 1 jobs...

[Sat Nov 22 14:56:13 2025]
localrule generate_pubmed_concords:
    input: babel_downloads/PubMed/verified, babel_downloads/PubMed/baseline, babel_downloads/PubMed/updatefiles
    output: babel_downloads/PubMed/titles.tsv, babel_downloads/PubMed/statuses.jsonl.gz, babel_outputs/intermediate/publications/ids/PMID, babel_outputs/intermediate/publications/concords/PMID_DOI, babel_outputs/intermediate/publications/concords/metadata.yaml
    jobid: 0
    reason: Forced execution
    resources: mem_mb=64000, mem_mib=954, disk_mb=1000, disk_mib=954, tmpdir=/projects/babel/runs/gaurav/babel-1.14-umls-level-0/babel_downloads/tmp, mem=64G, runtime=120, cpus_per_task=4
INFO snakemake.logging [2025-11-22T19:56:13+0000]:  Rule: generate_pubmed_concords, Jobid: 0
INFO snakemake.logging [2025-11-22T19:56:13+0000]: Shell command: None
WARNING root [2025-11-22T19:56:13+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/.snakemake_timestamp in PubMed files.
WARNING root [2025-11-22T19:56:13+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/README.txt in PubMed files.
INFO root [2025-11-22T19:56:13+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0001.xml.gz
INFO root [2025-11-22T19:56:36+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0001.xml.gz in 22.6419 seconds: 30000 PMIDs, 16743 DOIs, 2105 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T19:56:36+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0001.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T19:56:36+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0002.xml.gz
INFO root [2025-11-22T19:56:59+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0002.xml.gz in 23.0560 seconds: 30000 PMIDs, 16657 DOIs, 1771 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T19:56:59+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0002.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T19:56:59+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0003.xml.gz
INFO root [2025-11-22T19:57:20+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0003.xml.gz in 20.6502 seconds: 30000 PMIDs, 17449 DOIs, 1410 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T19:57:20+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0003.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T19:57:20+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0004.xml.gz
INFO root [2025-11-22T19:57:43+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0004.xml.gz in 23.7230 seconds: 30000 PMIDs, 15188 DOIs, 1967 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T19:57:43+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0004.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T19:57:43+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0005.xml.gz
INFO root [2025-11-22T19:58:05+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0005.xml.gz in 21.9573 seconds: 30000 PMIDs, 11338 DOIs, 1489 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T19:58:05+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0005.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T19:58:05+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0006.xml.gz
INFO root [2025-11-22T19:58:31+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0006.xml.gz in 25.3558 seconds: 30000 PMIDs, 16359 DOIs, 2597 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T19:58:31+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0006.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T19:58:31+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0007.xml.gz
INFO root [2025-11-22T19:58:55+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0007.xml.gz in 24.9116 seconds: 30000 PMIDs, 17559 DOIs, 2920 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T19:58:55+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0007.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T19:58:55+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0008.xml.gz
INFO root [2025-11-22T19:59:23+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0008.xml.gz in 27.1838 seconds: 30000 PMIDs, 16851 DOIs, 2423 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T19:59:23+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0008.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T19:59:23+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0009.xml.gz
INFO root [2025-11-22T19:59:40+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0009.xml.gz in 17.1112 seconds: 30000 PMIDs, 6782 DOIs, 1160 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T19:59:40+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0009.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T19:59:40+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0010.xml.gz
INFO root [2025-11-22T20:00:00+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0010.xml.gz in 20.1971 seconds: 30000 PMIDs, 9549 DOIs, 1784 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:00:00+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0010.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:00:00+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0011.xml.gz
INFO root [2025-11-22T20:00:24+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0011.xml.gz in 24.1641 seconds: 30000 PMIDs, 13759 DOIs, 2879 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:00:24+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0011.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:00:24+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0012.xml.gz
INFO root [2025-11-22T20:00:46+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0012.xml.gz in 22.1957 seconds: 30000 PMIDs, 13256 DOIs, 2491 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:00:46+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0012.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:00:46+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0013.xml.gz
INFO root [2025-11-22T20:01:09+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0013.xml.gz in 22.8390 seconds: 30000 PMIDs, 12485 DOIs, 2173 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:01:09+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0013.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:01:09+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0014.xml.gz
INFO root [2025-11-22T20:01:32+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0014.xml.gz in 22.4531 seconds: 30000 PMIDs, 15760 DOIs, 2202 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:01:32+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0014.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:01:32+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0015.xml.gz
INFO root [2025-11-22T20:01:55+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0015.xml.gz in 23.3628 seconds: 30000 PMIDs, 15478 DOIs, 2107 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:01:55+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0015.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:01:55+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0016.xml.gz
INFO root [2025-11-22T20:02:16+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0016.xml.gz in 20.5759 seconds: 30000 PMIDs, 15389 DOIs, 2042 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:02:16+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0016.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:02:16+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0017.xml.gz
INFO root [2025-11-22T20:02:39+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0017.xml.gz in 22.9997 seconds: 30000 PMIDs, 14330 DOIs, 2165 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:02:39+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0017.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:02:39+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0018.xml.gz
INFO root [2025-11-22T20:02:59+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0018.xml.gz in 20.6273 seconds: 30000 PMIDs, 11098 DOIs, 1300 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:02:59+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0018.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:02:59+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0019.xml.gz
INFO root [2025-11-22T20:03:22+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0019.xml.gz in 22.9992 seconds: 30000 PMIDs, 13865 DOIs, 1290 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:03:22+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0019.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:03:22+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0020.xml.gz
INFO root [2025-11-22T20:03:45+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0020.xml.gz in 22.3417 seconds: 30000 PMIDs, 10484 DOIs, 1618 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:03:45+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0020.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:03:45+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0021.xml.gz
INFO root [2025-11-22T20:04:07+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0021.xml.gz in 22.2596 seconds: 30000 PMIDs, 13533 DOIs, 2115 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:04:07+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0021.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:04:07+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0022.xml.gz
INFO root [2025-11-22T20:04:27+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0022.xml.gz in 20.1525 seconds: 30000 PMIDs, 14324 DOIs, 1869 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:04:27+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0022.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:04:27+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0023.xml.gz
INFO root [2025-11-22T20:04:50+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0023.xml.gz in 23.2685 seconds: 30000 PMIDs, 13529 DOIs, 1815 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:04:50+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0023.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:04:50+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0024.xml.gz
INFO root [2025-11-22T20:05:12+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0024.xml.gz in 21.3483 seconds: 30000 PMIDs, 13391 DOIs, 2017 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:05:12+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0024.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:05:12+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0025.xml.gz
INFO root [2025-11-22T20:05:33+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0025.xml.gz in 21.8279 seconds: 30000 PMIDs, 11218 DOIs, 1058 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:05:33+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0025.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:05:33+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0026.xml.gz
INFO root [2025-11-22T20:05:56+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0026.xml.gz in 22.9469 seconds: 30000 PMIDs, 12344 DOIs, 2235 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:05:56+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0026.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:05:56+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0027.xml.gz
INFO root [2025-11-22T20:06:21+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0027.xml.gz in 24.7887 seconds: 30000 PMIDs, 13755 DOIs, 2480 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:06:21+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0027.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:06:21+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0028.xml.gz
INFO root [2025-11-22T20:06:44+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0028.xml.gz in 22.3557 seconds: 30000 PMIDs, 15956 DOIs, 2407 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:06:44+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0028.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:06:44+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0029.xml.gz
INFO root [2025-11-22T20:07:08+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0029.xml.gz in 24.2342 seconds: 30000 PMIDs, 14756 DOIs, 2013 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:07:08+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0029.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:07:08+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0030.xml.gz
INFO root [2025-11-22T20:07:29+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0030.xml.gz in 20.9833 seconds: 30000 PMIDs, 13786 DOIs, 1632 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:07:29+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0030.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:07:29+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0031.xml.gz
INFO root [2025-11-22T20:07:51+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0031.xml.gz in 21.7980 seconds: 30000 PMIDs, 14163 DOIs, 1429 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:07:51+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0031.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:07:51+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0032.xml.gz
INFO root [2025-11-22T20:08:12+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0032.xml.gz in 21.8468 seconds: 30000 PMIDs, 14203 DOIs, 1987 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:08:12+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0032.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:08:12+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0033.xml.gz
INFO root [2025-11-22T20:08:37+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0033.xml.gz in 24.3037 seconds: 30000 PMIDs, 12632 DOIs, 1812 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:08:37+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0033.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:08:37+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0034.xml.gz
INFO root [2025-11-22T20:08:56+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0034.xml.gz in 19.0374 seconds: 30000 PMIDs, 5775 DOIs, 442 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:08:56+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0034.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:08:56+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0035.xml.gz
INFO root [2025-11-22T20:09:17+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0035.xml.gz in 20.8623 seconds: 30000 PMIDs, 8407 DOIs, 1305 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:09:17+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0035.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:09:17+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0036.xml.gz
INFO root [2025-11-22T20:09:39+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0036.xml.gz in 22.9086 seconds: 30000 PMIDs, 11549 DOIs, 2416 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:09:39+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0036.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:09:39+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0037.xml.gz
INFO root [2025-11-22T20:10:03+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0037.xml.gz in 23.9064 seconds: 30000 PMIDs, 15418 DOIs, 2172 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:10:03+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0037.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:10:03+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0038.xml.gz
INFO root [2025-11-22T20:10:26+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0038.xml.gz in 22.2035 seconds: 30000 PMIDs, 13847 DOIs, 1962 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:10:26+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0038.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:10:26+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0039.xml.gz
INFO root [2025-11-22T20:10:50+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0039.xml.gz in 24.6840 seconds: 30000 PMIDs, 14954 DOIs, 1955 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:10:50+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0039.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:10:50+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0040.xml.gz
INFO root [2025-11-22T20:11:11+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0040.xml.gz in 20.7643 seconds: 30000 PMIDs, 9620 DOIs, 1488 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:11:11+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0040.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:11:11+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0041.xml.gz
INFO root [2025-11-22T20:11:35+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0041.xml.gz in 24.0075 seconds: 30000 PMIDs, 10589 DOIs, 1207 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:11:35+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0041.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:11:35+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0042.xml.gz
INFO root [2025-11-22T20:11:58+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0042.xml.gz in 23.1845 seconds: 30000 PMIDs, 16423 DOIs, 2337 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:11:58+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0042.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:11:58+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0043.xml.gz
INFO root [2025-11-22T20:12:26+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0043.xml.gz in 27.4785 seconds: 30000 PMIDs, 12317 DOIs, 1365 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:12:26+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0043.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:12:26+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0044.xml.gz
INFO root [2025-11-22T20:12:56+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0044.xml.gz in 30.6863 seconds: 30000 PMIDs, 18775 DOIs, 2756 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:12:56+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0044.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:12:56+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0045.xml.gz
INFO root [2025-11-22T20:13:24+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0045.xml.gz in 27.4234 seconds: 30000 PMIDs, 18418 DOIs, 1874 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:13:24+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0045.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:13:24+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0046.xml.gz
INFO root [2025-11-22T20:13:56+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0046.xml.gz in 32.3838 seconds: 30000 PMIDs, 21152 DOIs, 3002 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:13:56+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0046.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:13:56+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0047.xml.gz
INFO root [2025-11-22T20:14:24+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0047.xml.gz in 27.9194 seconds: 30000 PMIDs, 18165 DOIs, 2172 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:14:24+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0047.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:14:24+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0048.xml.gz
INFO root [2025-11-22T20:14:50+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0048.xml.gz in 25.5194 seconds: 30000 PMIDs, 17574 DOIs, 1810 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:14:50+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0048.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:14:50+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0049.xml.gz
INFO root [2025-11-22T20:15:18+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0049.xml.gz in 27.8218 seconds: 30000 PMIDs, 17208 DOIs, 2031 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:15:18+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0049.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:15:18+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0050.xml.gz
INFO root [2025-11-22T20:15:45+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0050.xml.gz in 27.3120 seconds: 30000 PMIDs, 18542 DOIs, 1787 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:15:45+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0050.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:15:45+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0051.xml.gz
INFO root [2025-11-22T20:16:13+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0051.xml.gz in 28.0188 seconds: 30000 PMIDs, 19537 DOIs, 2520 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:16:13+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0051.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:16:13+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0052.xml.gz
INFO root [2025-11-22T20:16:40+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0052.xml.gz in 27.2519 seconds: 30000 PMIDs, 18880 DOIs, 2128 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:16:40+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0052.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:16:40+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0053.xml.gz
INFO root [2025-11-22T20:17:08+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0053.xml.gz in 27.4716 seconds: 30000 PMIDs, 18851 DOIs, 2159 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:17:08+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0053.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:17:08+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0054.xml.gz
INFO root [2025-11-22T20:17:34+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0054.xml.gz in 26.1180 seconds: 30000 PMIDs, 18860 DOIs, 2171 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:17:34+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0054.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:17:34+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0055.xml.gz
INFO root [2025-11-22T20:18:07+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0055.xml.gz in 32.9800 seconds: 30000 PMIDs, 19291 DOIs, 2699 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:18:07+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0055.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:18:07+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0056.xml.gz
INFO root [2025-11-22T20:18:37+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0056.xml.gz in 29.9529 seconds: 30000 PMIDs, 19984 DOIs, 2809 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:18:37+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0056.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:18:37+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0057.xml.gz
INFO root [2025-11-22T20:19:11+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0057.xml.gz in 34.0922 seconds: 30000 PMIDs, 20153 DOIs, 2774 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:19:11+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0057.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:19:11+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0058.xml.gz
INFO root [2025-11-22T20:19:36+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0058.xml.gz in 25.3010 seconds: 30000 PMIDs, 18426 DOIs, 2362 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:19:36+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0058.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:19:36+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0059.xml.gz
INFO root [2025-11-22T20:20:01+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0059.xml.gz in 25.0864 seconds: 30000 PMIDs, 16299 DOIs, 1269 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:20:01+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0059.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:20:01+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0060.xml.gz
INFO root [2025-11-22T20:20:29+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0060.xml.gz in 27.9146 seconds: 30000 PMIDs, 12141 DOIs, 1159 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:20:29+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0060.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:20:29+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0061.xml.gz
INFO root [2025-11-22T20:20:58+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0061.xml.gz in 28.9347 seconds: 30000 PMIDs, 16368 DOIs, 2427 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:20:58+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0061.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:20:58+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0062.xml.gz
INFO root [2025-11-22T20:21:24+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0062.xml.gz in 25.7042 seconds: 30000 PMIDs, 16784 DOIs, 1913 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:21:24+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0062.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:21:24+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0063.xml.gz
INFO root [2025-11-22T20:21:52+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0063.xml.gz in 28.2325 seconds: 30000 PMIDs, 19518 DOIs, 2841 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:21:52+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0063.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:21:52+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0064.xml.gz
INFO root [2025-11-22T20:22:20+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0064.xml.gz in 28.2137 seconds: 30000 PMIDs, 18029 DOIs, 1993 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:22:20+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0064.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:22:20+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0065.xml.gz
INFO root [2025-11-22T20:22:48+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0065.xml.gz in 27.6821 seconds: 30000 PMIDs, 17430 DOIs, 1881 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:22:48+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0065.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:22:48+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0066.xml.gz
INFO root [2025-11-22T20:23:16+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0066.xml.gz in 28.0711 seconds: 30000 PMIDs, 19552 DOIs, 2651 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:23:16+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0066.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:23:16+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0067.xml.gz
INFO root [2025-11-22T20:23:43+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0067.xml.gz in 27.2965 seconds: 30000 PMIDs, 19341 DOIs, 2557 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:23:43+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0067.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:23:43+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0068.xml.gz
INFO root [2025-11-22T20:24:09+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0068.xml.gz in 26.1181 seconds: 30000 PMIDs, 17846 DOIs, 2100 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:24:09+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0068.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:24:09+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0069.xml.gz
INFO root [2025-11-22T20:24:37+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0069.xml.gz in 27.7458 seconds: 30000 PMIDs, 14376 DOIs, 931 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:24:37+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0069.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:24:37+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0070.xml.gz
INFO root [2025-11-22T20:25:07+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0070.xml.gz in 29.5957 seconds: 30000 PMIDs, 16044 DOIs, 2709 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:25:07+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0070.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:25:07+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0071.xml.gz
INFO root [2025-11-22T20:25:32+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0071.xml.gz in 25.6591 seconds: 30000 PMIDs, 14787 DOIs, 1743 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:25:32+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0071.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:25:32+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0072.xml.gz
INFO root [2025-11-22T20:26:08+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0072.xml.gz in 35.2882 seconds: 30000 PMIDs, 19873 DOIs, 3296 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:26:08+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0072.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:26:08+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0073.xml.gz
INFO root [2025-11-22T20:26:33+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0073.xml.gz in 25.5085 seconds: 30000 PMIDs, 17131 DOIs, 2245 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:26:33+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0073.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:26:33+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0074.xml.gz
INFO root [2025-11-22T20:27:00+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0074.xml.gz in 27.3765 seconds: 30000 PMIDs, 15978 DOIs, 1588 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:27:00+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0074.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:27:00+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0075.xml.gz
INFO root [2025-11-22T20:27:25+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0075.xml.gz in 24.1334 seconds: 30000 PMIDs, 16454 DOIs, 1921 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:27:25+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0075.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:27:25+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0076.xml.gz
INFO root [2025-11-22T20:27:55+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0076.xml.gz in 30.1308 seconds: 30000 PMIDs, 16570 DOIs, 1460 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:27:55+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0076.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:27:55+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0077.xml.gz
INFO root [2025-11-22T20:28:23+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0077.xml.gz in 27.7708 seconds: 30000 PMIDs, 18870 DOIs, 2174 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:28:23+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0077.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:28:23+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0078.xml.gz
INFO root [2025-11-22T20:28:51+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0078.xml.gz in 28.7472 seconds: 30000 PMIDs, 17793 DOIs, 1833 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:28:51+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0078.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:28:51+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0079.xml.gz
INFO root [2025-11-22T20:29:17+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0079.xml.gz in 25.5506 seconds: 30000 PMIDs, 16211 DOIs, 2003 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:29:17+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0079.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:29:17+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0080.xml.gz
INFO root [2025-11-22T20:29:52+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0080.xml.gz in 35.1257 seconds: 30000 PMIDs, 18264 DOIs, 2439 PMCs, 30000 titles with the following PubStatuses: ['accepted', 'entrez', 'medline', 'pubmed', 'received', 'revised'].
WARNING root [2025-11-22T20:29:52+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0080.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:29:52+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0081.xml.gz
INFO root [2025-11-22T20:30:25+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0081.xml.gz in 33.1226 seconds: 30000 PMIDs, 19571 DOIs, 2807 PMCs, 30000 titles with the following PubStatuses: ['accepted', 'entrez', 'medline', 'pubmed', 'received', 'revised'].
WARNING root [2025-11-22T20:30:25+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0081.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:30:25+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0082.xml.gz
INFO root [2025-11-22T20:31:01+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0082.xml.gz in 35.8306 seconds: 30000 PMIDs, 19090 DOIs, 2752 PMCs, 30000 titles with the following PubStatuses: ['accepted', 'entrez', 'medline', 'pubmed', 'received', 'revised'].
WARNING root [2025-11-22T20:31:01+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0082.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:31:01+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0083.xml.gz
INFO root [2025-11-22T20:31:30+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0083.xml.gz in 28.6387 seconds: 30000 PMIDs, 17025 DOIs, 3737 PMCs, 30000 titles with the following PubStatuses: ['accepted', 'entrez', 'medline', 'pubmed', 'received', 'revised'].
WARNING root [2025-11-22T20:31:30+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0083.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:31:30+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0084.xml.gz
INFO root [2025-11-22T20:32:05+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0084.xml.gz in 35.1306 seconds: 30000 PMIDs, 16950 DOIs, 2547 PMCs, 30000 titles with the following PubStatuses: ['accepted', 'entrez', 'medline', 'pubmed', 'received'].
WARNING root [2025-11-22T20:32:05+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0084.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:32:05+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0085.xml.gz
INFO root [2025-11-22T20:32:38+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0085.xml.gz in 33.4716 seconds: 30000 PMIDs, 20224 DOIs, 3103 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:32:38+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0085.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:32:38+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0086.xml.gz
INFO root [2025-11-22T20:33:08+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0086.xml.gz in 29.5713 seconds: 30000 PMIDs, 16268 DOIs, 1847 PMCs, 30000 titles with the following PubStatuses: ['accepted', 'entrez', 'medline', 'pubmed', 'received', 'revised'].
WARNING root [2025-11-22T20:33:08+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0086.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:33:08+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0087.xml.gz
INFO root [2025-11-22T20:33:34+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0087.xml.gz in 26.0076 seconds: 30000 PMIDs, 12813 DOIs, 1077 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:33:34+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0087.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:33:34+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0088.xml.gz
INFO root [2025-11-22T20:34:02+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0088.xml.gz in 28.4776 seconds: 30000 PMIDs, 14207 DOIs, 1544 PMCs, 30000 titles with the following PubStatuses: ['accepted', 'entrez', 'medline', 'pubmed', 'received', 'revised'].
WARNING root [2025-11-22T20:34:02+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0088.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:34:02+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0089.xml.gz
INFO root [2025-11-22T20:34:33+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0089.xml.gz in 31.0548 seconds: 30000 PMIDs, 16104 DOIs, 1870 PMCs, 30000 titles with the following PubStatuses: ['accepted', 'entrez', 'medline', 'pubmed', 'received', 'revised'].
WARNING root [2025-11-22T20:34:33+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0089.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:34:33+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0090.xml.gz
INFO root [2025-11-22T20:34:58+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0090.xml.gz in 24.9591 seconds: 30000 PMIDs, 16321 DOIs, 1332 PMCs, 30000 titles with the following PubStatuses: ['accepted', 'entrez', 'medline', 'pubmed', 'received', 'revised'].
WARNING root [2025-11-22T20:34:58+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0090.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:34:58+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0091.xml.gz
INFO root [2025-11-22T20:35:27+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0091.xml.gz in 28.9507 seconds: 30000 PMIDs, 15877 DOIs, 1413 PMCs, 30000 titles with the following PubStatuses: ['accepted', 'entrez', 'medline', 'pubmed', 'received', 'revised'].
WARNING root [2025-11-22T20:35:27+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0091.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:35:27+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0092.xml.gz
INFO root [2025-11-22T20:35:53+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0092.xml.gz in 25.3383 seconds: 30000 PMIDs, 17297 DOIs, 1703 PMCs, 30000 titles with the following PubStatuses: ['accepted', 'entrez', 'medline', 'pubmed', 'received', 'revised'].
WARNING root [2025-11-22T20:35:53+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0092.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:35:53+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0093.xml.gz
INFO root [2025-11-22T20:36:20+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0093.xml.gz in 27.3734 seconds: 30000 PMIDs, 16608 DOIs, 1801 PMCs, 30000 titles with the following PubStatuses: ['accepted', 'entrez', 'medline', 'pubmed', 'received'].
WARNING root [2025-11-22T20:36:20+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0093.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:36:20+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0094.xml.gz
INFO root [2025-11-22T20:36:52+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0094.xml.gz in 32.1535 seconds: 30000 PMIDs, 19593 DOIs, 3490 PMCs, 30000 titles with the following PubStatuses: ['accepted', 'entrez', 'medline', 'pubmed', 'received', 'revised'].
WARNING root [2025-11-22T20:36:52+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0094.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:36:52+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0095.xml.gz
INFO root [2025-11-22T20:37:22+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0095.xml.gz in 30.1689 seconds: 30000 PMIDs, 19253 DOIs, 2038 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:37:22+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0095.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:37:22+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0096.xml.gz
INFO root [2025-11-22T20:37:52+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0096.xml.gz in 29.4072 seconds: 30000 PMIDs, 20382 DOIs, 2144 PMCs, 30000 titles with the following PubStatuses: ['accepted', 'entrez', 'medline', 'pubmed', 'received', 'revised'].
WARNING root [2025-11-22T20:37:52+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0096.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:37:52+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0097.xml.gz
INFO root [2025-11-22T20:38:20+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0097.xml.gz in 27.8820 seconds: 30000 PMIDs, 19066 DOIs, 1985 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:38:20+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0097.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:38:20+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0098.xml.gz
INFO root [2025-11-22T20:38:46+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0098.xml.gz in 26.5934 seconds: 30000 PMIDs, 13998 DOIs, 1656 PMCs, 30000 titles with the following PubStatuses: ['accepted', 'entrez', 'medline', 'pubmed', 'received', 'revised'].
WARNING root [2025-11-22T20:38:46+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0098.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:38:46+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0099.xml.gz
INFO root [2025-11-22T20:39:16+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0099.xml.gz in 29.4120 seconds: 30000 PMIDs, 16965 DOIs, 2668 PMCs, 30000 titles with the following PubStatuses: ['accepted', 'entrez', 'medline', 'pubmed', 'received', 'revised'].
WARNING root [2025-11-22T20:39:16+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0099.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:39:16+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0100.xml.gz
INFO root [2025-11-22T20:39:49+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0100.xml.gz in 33.3030 seconds: 30000 PMIDs, 20245 DOIs, 3770 PMCs, 30000 titles with the following PubStatuses: ['accepted', 'entrez', 'medline', 'pubmed', 'received'].
WARNING root [2025-11-22T20:39:49+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0100.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:39:49+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0101.xml.gz
INFO root [2025-11-22T20:40:20+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0101.xml.gz in 31.2214 seconds: 30000 PMIDs, 18342 DOIs, 3210 PMCs, 30000 titles with the following PubStatuses: ['accepted', 'entrez', 'medline', 'pubmed', 'received', 'revised'].
WARNING root [2025-11-22T20:40:20+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0101.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:40:20+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0102.xml.gz
INFO root [2025-11-22T20:40:47+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0102.xml.gz in 26.8525 seconds: 30000 PMIDs, 14512 DOIs, 1799 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:40:47+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0102.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:40:47+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0103.xml.gz
INFO root [2025-11-22T20:41:15+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0103.xml.gz in 28.4525 seconds: 30000 PMIDs, 18097 DOIs, 4142 PMCs, 30000 titles with the following PubStatuses: ['accepted', 'entrez', 'medline', 'pubmed', 'received', 'revised'].
WARNING root [2025-11-22T20:41:15+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0103.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:41:15+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0104.xml.gz
INFO root [2025-11-22T20:41:46+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0104.xml.gz in 30.1275 seconds: 30000 PMIDs, 18439 DOIs, 4518 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:41:46+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0104.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:41:46+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0105.xml.gz
INFO root [2025-11-22T20:42:12+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0105.xml.gz in 26.4394 seconds: 30000 PMIDs, 15413 DOIs, 1634 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:42:12+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0105.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:42:12+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0106.xml.gz
INFO root [2025-11-22T20:42:37+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0106.xml.gz in 25.4703 seconds: 30000 PMIDs, 15961 DOIs, 1740 PMCs, 30000 titles with the following PubStatuses: ['accepted', 'entrez', 'medline', 'pubmed', 'received', 'revised'].
WARNING root [2025-11-22T20:42:37+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0106.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:42:37+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0107.xml.gz
INFO root [2025-11-22T20:43:03+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0107.xml.gz in 25.3752 seconds: 30000 PMIDs, 13835 DOIs, 1110 PMCs, 30000 titles with the following PubStatuses: ['accepted', 'entrez', 'medline', 'pubmed', 'received', 'revised'].
WARNING root [2025-11-22T20:43:03+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0107.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:43:03+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0108.xml.gz
INFO root [2025-11-22T20:43:30+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0108.xml.gz in 26.9727 seconds: 30000 PMIDs, 13753 DOIs, 1422 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:43:30+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0108.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:43:30+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0109.xml.gz
INFO root [2025-11-22T20:43:53+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0109.xml.gz in 22.9219 seconds: 30000 PMIDs, 14196 DOIs, 1569 PMCs, 30000 titles with the following PubStatuses: ['accepted', 'entrez', 'medline', 'pubmed', 'received', 'revised'].
WARNING root [2025-11-22T20:43:53+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0109.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:43:53+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0110.xml.gz
INFO root [2025-11-22T20:44:19+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0110.xml.gz in 26.5801 seconds: 30000 PMIDs, 15506 DOIs, 1872 PMCs, 30000 titles with the following PubStatuses: ['accepted', 'entrez', 'medline', 'pubmed', 'received', 'revised'].
WARNING root [2025-11-22T20:44:19+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0110.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:44:19+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0111.xml.gz
INFO root [2025-11-22T20:44:45+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0111.xml.gz in 25.2651 seconds: 30000 PMIDs, 16681 DOIs, 1455 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:44:45+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0111.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:44:45+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0112.xml.gz
INFO root [2025-11-22T20:45:11+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0112.xml.gz in 26.6159 seconds: 30000 PMIDs, 17753 DOIs, 1415 PMCs, 30000 titles with the following PubStatuses: ['accepted', 'entrez', 'medline', 'pubmed', 'received', 'revised'].
WARNING root [2025-11-22T20:45:11+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0112.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:45:11+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0113.xml.gz
INFO root [2025-11-22T20:45:36+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0113.xml.gz in 24.4511 seconds: 30000 PMIDs, 16284 DOIs, 1800 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:45:36+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0113.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:45:36+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0114.xml.gz
INFO root [2025-11-22T20:46:03+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0114.xml.gz in 27.0604 seconds: 30000 PMIDs, 14686 DOIs, 1711 PMCs, 30000 titles with the following PubStatuses: ['accepted', 'entrez', 'medline', 'pubmed', 'received', 'revised'].
WARNING root [2025-11-22T20:46:03+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0114.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:46:03+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0115.xml.gz
INFO root [2025-11-22T20:46:27+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0115.xml.gz in 24.4984 seconds: 30000 PMIDs, 11047 DOIs, 1609 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:46:27+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0115.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:46:27+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0116.xml.gz
INFO root [2025-11-22T20:46:54+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0116.xml.gz in 26.9175 seconds: 30000 PMIDs, 15333 DOIs, 2194 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:46:54+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0116.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:46:54+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0117.xml.gz
INFO root [2025-11-22T20:47:21+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0117.xml.gz in 26.8843 seconds: 30000 PMIDs, 15556 DOIs, 1728 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:47:21+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0117.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:47:21+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0118.xml.gz
INFO root [2025-11-22T20:47:47+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0118.xml.gz in 26.0055 seconds: 30000 PMIDs, 15626 DOIs, 1767 PMCs, 30000 titles with the following PubStatuses: ['accepted', 'entrez', 'medline', 'pubmed', 'received', 'revised'].
WARNING root [2025-11-22T20:47:47+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0118.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:47:47+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0119.xml.gz
INFO root [2025-11-22T20:48:12+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0119.xml.gz in 25.0904 seconds: 30000 PMIDs, 16555 DOIs, 1480 PMCs, 30000 titles with the following PubStatuses: ['accepted', 'entrez', 'medline', 'pubmed', 'received', 'revised'].
WARNING root [2025-11-22T20:48:12+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0119.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:48:12+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0120.xml.gz
INFO root [2025-11-22T20:48:37+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0120.xml.gz in 24.6110 seconds: 30000 PMIDs, 15853 DOIs, 1246 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:48:37+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0120.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:48:37+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0121.xml.gz
INFO root [2025-11-22T20:48:56+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0121.xml.gz in 19.2736 seconds: 30000 PMIDs, 10362 DOIs, 665 PMCs, 30000 titles with the following PubStatuses: ['accepted', 'entrez', 'medline', 'pubmed', 'received', 'revised'].
WARNING root [2025-11-22T20:48:56+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0121.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:48:56+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0122.xml.gz
INFO root [2025-11-22T20:49:22+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0122.xml.gz in 26.3017 seconds: 30000 PMIDs, 16166 DOIs, 1842 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:49:22+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0122.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:49:22+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0123.xml.gz
INFO root [2025-11-22T20:49:46+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0123.xml.gz in 23.9572 seconds: 30000 PMIDs, 16213 DOIs, 1573 PMCs, 30000 titles with the following PubStatuses: ['accepted', 'entrez', 'medline', 'pubmed', 'received', 'revised'].
WARNING root [2025-11-22T20:49:46+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0123.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:49:46+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0124.xml.gz
INFO root [2025-11-22T20:50:13+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0124.xml.gz in 27.1582 seconds: 30000 PMIDs, 16677 DOIs, 1448 PMCs, 30000 titles with the following PubStatuses: ['accepted', 'entrez', 'medline', 'pubmed', 'received', 'revised'].
WARNING root [2025-11-22T20:50:13+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0124.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:50:13+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0125.xml.gz
INFO root [2025-11-22T20:50:36+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0125.xml.gz in 22.1512 seconds: 30000 PMIDs, 16583 DOIs, 1448 PMCs, 30000 titles with the following PubStatuses: ['accepted', 'entrez', 'medline', 'pubmed', 'received', 'revised'].
WARNING root [2025-11-22T20:50:36+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0125.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:50:36+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0126.xml.gz
INFO root [2025-11-22T20:51:02+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0126.xml.gz in 26.3835 seconds: 30000 PMIDs, 16541 DOIs, 1688 PMCs, 30000 titles with the following PubStatuses: ['accepted', 'entrez', 'medline', 'pubmed', 'received', 'revised'].
WARNING root [2025-11-22T20:51:02+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0126.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:51:02+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0127.xml.gz
INFO root [2025-11-22T20:51:26+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0127.xml.gz in 24.4285 seconds: 30000 PMIDs, 14944 DOIs, 1233 PMCs, 30000 titles with the following PubStatuses: ['accepted', 'entrez', 'medline', 'pubmed', 'received', 'revised'].
WARNING root [2025-11-22T20:51:26+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0127.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:51:26+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0128.xml.gz
INFO root [2025-11-22T20:51:50+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0128.xml.gz in 23.4065 seconds: 30000 PMIDs, 10145 DOIs, 1074 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:51:50+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0128.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:51:50+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0129.xml.gz
INFO root [2025-11-22T20:52:18+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0129.xml.gz in 27.9186 seconds: 30000 PMIDs, 14937 DOIs, 2032 PMCs, 30000 titles with the following PubStatuses: ['accepted', 'entrez', 'medline', 'pubmed', 'received', 'revised'].
WARNING root [2025-11-22T20:52:18+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0129.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:52:18+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0130.xml.gz
INFO root [2025-11-22T20:52:43+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0130.xml.gz in 25.0650 seconds: 30000 PMIDs, 15245 DOIs, 2586 PMCs, 30000 titles with the following PubStatuses: ['accepted', 'entrez', 'medline', 'pubmed', 'received', 'revised'].
WARNING root [2025-11-22T20:52:43+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0130.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:52:43+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0131.xml.gz
INFO root [2025-11-22T20:53:10+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0131.xml.gz in 26.8209 seconds: 30000 PMIDs, 18673 DOIs, 2572 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:53:10+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0131.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:53:10+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0132.xml.gz
INFO root [2025-11-22T20:53:35+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0132.xml.gz in 25.1262 seconds: 30000 PMIDs, 18814 DOIs, 2012 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:53:35+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0132.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:53:35+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0133.xml.gz
INFO root [2025-11-22T20:54:02+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0133.xml.gz in 27.6010 seconds: 30000 PMIDs, 17277 DOIs, 1554 PMCs, 30000 titles with the following PubStatuses: ['accepted', 'entrez', 'medline', 'pubmed', 'received', 'revised'].
WARNING root [2025-11-22T20:54:02+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0133.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:54:02+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0134.xml.gz
INFO root [2025-11-22T20:54:29+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0134.xml.gz in 26.7603 seconds: 30000 PMIDs, 17286 DOIs, 1722 PMCs, 30000 titles with the following PubStatuses: ['accepted', 'entrez', 'medline', 'pubmed', 'received', 'revised'].
WARNING root [2025-11-22T20:54:29+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0134.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:54:29+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0135.xml.gz
INFO root [2025-11-22T20:54:52+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0135.xml.gz in 23.1892 seconds: 30000 PMIDs, 16102 DOIs, 1280 PMCs, 30000 titles with the following PubStatuses: ['accepted', 'entrez', 'medline', 'pubmed', 'received', 'revised'].
WARNING root [2025-11-22T20:54:52+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0135.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:54:52+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0136.xml.gz
INFO root [2025-11-22T20:55:17+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0136.xml.gz in 25.2344 seconds: 30000 PMIDs, 13447 DOIs, 1278 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:55:17+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0136.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:55:17+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0137.xml.gz
INFO root [2025-11-22T20:55:44+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0137.xml.gz in 26.1079 seconds: 30000 PMIDs, 17046 DOIs, 1639 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:55:44+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0137.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:55:44+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0138.xml.gz
INFO root [2025-11-22T20:56:11+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0138.xml.gz in 27.1394 seconds: 30000 PMIDs, 14694 DOIs, 1553 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:56:11+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0138.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:56:11+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0139.xml.gz
INFO root [2025-11-22T20:56:33+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0139.xml.gz in 22.6981 seconds: 30000 PMIDs, 13218 DOIs, 1259 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:56:33+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0139.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:56:33+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0140.xml.gz
INFO root [2025-11-22T20:56:57+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0140.xml.gz in 23.7879 seconds: 30000 PMIDs, 12804 DOIs, 2155 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:56:57+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0140.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:56:57+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0141.xml.gz
INFO root [2025-11-22T20:57:22+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0141.xml.gz in 24.6393 seconds: 30000 PMIDs, 6541 DOIs, 1170 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:57:22+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0141.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:57:22+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0142.xml.gz
INFO root [2025-11-22T20:57:46+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0142.xml.gz in 23.8727 seconds: 30000 PMIDs, 9734 DOIs, 1663 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:57:46+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0142.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:57:46+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0143.xml.gz
INFO root [2025-11-22T20:58:12+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0143.xml.gz in 26.4553 seconds: 30000 PMIDs, 13520 DOIs, 2244 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:58:12+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0143.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:58:12+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0144.xml.gz
INFO root [2025-11-22T20:58:38+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0144.xml.gz in 25.4246 seconds: 30000 PMIDs, 14679 DOIs, 2614 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:58:38+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0144.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:58:38+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0145.xml.gz
INFO root [2025-11-22T20:59:08+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0145.xml.gz in 29.9512 seconds: 30000 PMIDs, 16799 DOIs, 2718 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:59:08+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0145.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:59:08+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0146.xml.gz
INFO root [2025-11-22T20:59:37+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0146.xml.gz in 29.1247 seconds: 30000 PMIDs, 13528 DOIs, 1835 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T20:59:37+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0146.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T20:59:37+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0147.xml.gz
INFO root [2025-11-22T21:00:00+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0147.xml.gz in 22.9109 seconds: 30000 PMIDs, 13647 DOIs, 1723 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:00:00+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0147.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:00:00+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0148.xml.gz
INFO root [2025-11-22T21:00:25+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0148.xml.gz in 25.4567 seconds: 30000 PMIDs, 9072 DOIs, 1365 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:00:25+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0148.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:00:25+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0149.xml.gz
INFO root [2025-11-22T21:00:42+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0149.xml.gz in 17.3602 seconds: 30000 PMIDs, 5288 DOIs, 463 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:00:42+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0149.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:00:42+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0150.xml.gz
INFO root [2025-11-22T21:01:04+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0150.xml.gz in 22.0633 seconds: 30000 PMIDs, 8192 DOIs, 1338 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:01:04+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0150.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:01:05+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0151.xml.gz
INFO root [2025-11-22T21:01:27+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0151.xml.gz in 22.6896 seconds: 30000 PMIDs, 10724 DOIs, 2092 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:01:27+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0151.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:01:27+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0152.xml.gz
INFO root [2025-11-22T21:01:54+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0152.xml.gz in 26.9326 seconds: 30000 PMIDs, 13160 DOIs, 2661 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:01:54+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0152.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:01:54+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0153.xml.gz
INFO root [2025-11-22T21:02:19+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0153.xml.gz in 24.4929 seconds: 30000 PMIDs, 12736 DOIs, 2360 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:02:19+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0153.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:02:19+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0154.xml.gz
INFO root [2025-11-22T21:02:45+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0154.xml.gz in 26.7338 seconds: 30000 PMIDs, 12156 DOIs, 2189 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:02:45+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0154.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:02:45+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0155.xml.gz
INFO root [2025-11-22T21:03:08+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0155.xml.gz in 22.6444 seconds: 30000 PMIDs, 8464 DOIs, 1244 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:03:08+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0155.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:03:08+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0156.xml.gz
INFO root [2025-11-22T21:03:31+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0156.xml.gz in 22.6969 seconds: 30000 PMIDs, 14227 DOIs, 1842 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:03:31+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0156.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:03:31+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0157.xml.gz
INFO root [2025-11-22T21:03:56+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0157.xml.gz in 25.5156 seconds: 30000 PMIDs, 14795 DOIs, 2184 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:03:56+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0157.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:03:56+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0158.xml.gz
INFO root [2025-11-22T21:04:19+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0158.xml.gz in 22.6416 seconds: 30000 PMIDs, 13582 DOIs, 1883 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:04:19+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0158.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:04:19+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0159.xml.gz
INFO root [2025-11-22T21:04:44+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0159.xml.gz in 24.7851 seconds: 30000 PMIDs, 8118 DOIs, 902 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:04:44+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0159.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:04:44+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0160.xml.gz
INFO root [2025-11-22T21:05:09+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0160.xml.gz in 25.4937 seconds: 30000 PMIDs, 13102 DOIs, 1728 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:05:09+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0160.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:05:09+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0161.xml.gz
INFO root [2025-11-22T21:05:33+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0161.xml.gz in 23.4350 seconds: 30000 PMIDs, 14336 DOIs, 1820 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:05:33+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0161.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:05:33+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0162.xml.gz
INFO root [2025-11-22T21:05:57+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0162.xml.gz in 24.1707 seconds: 30000 PMIDs, 10528 DOIs, 1888 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:05:57+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0162.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:05:57+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0163.xml.gz
INFO root [2025-11-22T21:06:22+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0163.xml.gz in 25.2358 seconds: 30000 PMIDs, 9843 DOIs, 1961 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:06:22+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0163.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:06:22+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0164.xml.gz
INFO root [2025-11-22T21:06:46+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0164.xml.gz in 23.8687 seconds: 30000 PMIDs, 10827 DOIs, 2050 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:06:46+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0164.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:06:46+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0165.xml.gz
INFO root [2025-11-22T21:07:11+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0165.xml.gz in 25.3751 seconds: 30000 PMIDs, 11212 DOIs, 2491 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:07:11+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0165.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:07:11+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0166.xml.gz
INFO root [2025-11-22T21:07:36+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0166.xml.gz in 24.6235 seconds: 30000 PMIDs, 11432 DOIs, 2190 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:07:36+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0166.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:07:36+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0167.xml.gz
INFO root [2025-11-22T21:08:02+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0167.xml.gz in 25.9912 seconds: 30000 PMIDs, 13669 DOIs, 2226 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:08:02+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0167.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:08:02+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0168.xml.gz
INFO root [2025-11-22T21:08:26+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0168.xml.gz in 24.3251 seconds: 30000 PMIDs, 13046 DOIs, 1527 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:08:26+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0168.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:08:26+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0169.xml.gz
INFO root [2025-11-22T21:08:50+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0169.xml.gz in 23.6121 seconds: 30000 PMIDs, 12665 DOIs, 2434 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:08:50+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0169.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:08:50+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0170.xml.gz
INFO root [2025-11-22T21:09:13+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0170.xml.gz in 23.2507 seconds: 30000 PMIDs, 11988 DOIs, 1626 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:09:13+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0170.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:09:13+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0171.xml.gz
INFO root [2025-11-22T21:09:36+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0171.xml.gz in 22.6506 seconds: 30000 PMIDs, 7953 DOIs, 1374 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:09:36+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0171.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:09:36+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0172.xml.gz
INFO root [2025-11-22T21:09:56+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0172.xml.gz in 20.1071 seconds: 30000 PMIDs, 5843 DOIs, 573 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:09:56+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0172.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:09:56+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0173.xml.gz
INFO root [2025-11-22T21:10:14+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0173.xml.gz in 18.5406 seconds: 30000 PMIDs, 2811 DOIs, 253 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:10:14+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0173.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:10:14+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0174.xml.gz
INFO root [2025-11-22T21:10:35+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0174.xml.gz in 20.8705 seconds: 30000 PMIDs, 6783 DOIs, 1237 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:10:35+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0174.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:10:35+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0175.xml.gz
INFO root [2025-11-22T21:10:53+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0175.xml.gz in 17.5798 seconds: 30000 PMIDs, 6831 DOIs, 1107 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:10:53+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0175.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:10:53+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0176.xml.gz
INFO root [2025-11-22T21:11:14+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0176.xml.gz in 21.2993 seconds: 30000 PMIDs, 7309 DOIs, 1514 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:11:14+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0176.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:11:14+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0177.xml.gz
INFO root [2025-11-22T21:11:36+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0177.xml.gz in 21.6006 seconds: 30000 PMIDs, 9773 DOIs, 1954 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:11:36+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0177.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:11:36+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0178.xml.gz
INFO root [2025-11-22T21:12:02+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0178.xml.gz in 26.2256 seconds: 30000 PMIDs, 11407 DOIs, 1970 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:12:02+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0178.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:12:02+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0179.xml.gz
INFO root [2025-11-22T21:12:22+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0179.xml.gz in 19.7819 seconds: 30000 PMIDs, 5538 DOIs, 557 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:12:22+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0179.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:12:22+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0180.xml.gz
INFO root [2025-11-22T21:12:45+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0180.xml.gz in 23.3276 seconds: 30000 PMIDs, 10559 DOIs, 1468 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:12:45+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0180.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:12:45+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0181.xml.gz
INFO root [2025-11-22T21:13:08+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0181.xml.gz in 23.1557 seconds: 30000 PMIDs, 12820 DOIs, 1953 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:13:08+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0181.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:13:08+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0182.xml.gz
INFO root [2025-11-22T21:13:35+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0182.xml.gz in 26.3800 seconds: 30000 PMIDs, 11840 DOIs, 1970 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:13:35+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0182.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:13:35+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0183.xml.gz
INFO root [2025-11-22T21:13:54+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0183.xml.gz in 19.5479 seconds: 30000 PMIDs, 7858 DOIs, 1352 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:13:54+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0183.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:13:54+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0184.xml.gz
INFO root [2025-11-22T21:14:16+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0184.xml.gz in 21.7625 seconds: 30000 PMIDs, 10577 DOIs, 1360 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:14:16+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0184.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:14:16+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0185.xml.gz
INFO root [2025-11-22T21:14:42+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0185.xml.gz in 25.6677 seconds: 30000 PMIDs, 11800 DOIs, 2043 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:14:42+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0185.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:14:42+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0186.xml.gz
INFO root [2025-11-22T21:15:04+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0186.xml.gz in 22.2777 seconds: 30000 PMIDs, 4907 DOIs, 510 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:15:04+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0186.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:15:04+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0187.xml.gz
INFO root [2025-11-22T21:15:23+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0187.xml.gz in 19.0124 seconds: 30000 PMIDs, 5012 DOIs, 672 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:15:23+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0187.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:15:23+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0188.xml.gz
INFO root [2025-11-22T21:15:48+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0188.xml.gz in 25.4714 seconds: 30000 PMIDs, 16296 DOIs, 2672 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:15:48+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0188.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:15:48+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0189.xml.gz
INFO root [2025-11-22T21:16:08+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0189.xml.gz in 20.0068 seconds: 30000 PMIDs, 11978 DOIs, 1872 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:16:08+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0189.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:16:08+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0190.xml.gz
INFO root [2025-11-22T21:16:30+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0190.xml.gz in 21.8566 seconds: 30000 PMIDs, 8339 DOIs, 1224 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:16:30+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0190.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:16:30+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0191.xml.gz
INFO root [2025-11-22T21:16:52+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0191.xml.gz in 21.3821 seconds: 30000 PMIDs, 3793 DOIs, 202 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:16:52+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0191.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:16:52+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0192.xml.gz
INFO root [2025-11-22T21:17:14+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0192.xml.gz in 22.6266 seconds: 30000 PMIDs, 14812 DOIs, 2730 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:17:14+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0192.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:17:14+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0193.xml.gz
INFO root [2025-11-22T21:17:36+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0193.xml.gz in 21.7620 seconds: 30000 PMIDs, 12749 DOIs, 1919 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:17:36+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0193.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:17:36+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0194.xml.gz
INFO root [2025-11-22T21:18:00+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0194.xml.gz in 24.4079 seconds: 30000 PMIDs, 9853 DOIs, 1546 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:18:00+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0194.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:18:00+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0195.xml.gz
INFO root [2025-11-22T21:18:19+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0195.xml.gz in 18.1608 seconds: 30000 PMIDs, 6347 DOIs, 678 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:18:19+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0195.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:18:19+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0196.xml.gz
INFO root [2025-11-22T21:18:40+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0196.xml.gz in 21.0637 seconds: 30000 PMIDs, 8556 DOIs, 1089 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:18:40+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0196.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:18:40+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0197.xml.gz
INFO root [2025-11-22T21:18:58+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0197.xml.gz in 18.5883 seconds: 30000 PMIDs, 13004 DOIs, 2249 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:18:58+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0197.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:18:58+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0198.xml.gz
INFO root [2025-11-22T21:19:20+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0198.xml.gz in 21.3621 seconds: 30000 PMIDs, 12945 DOIs, 1632 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:19:20+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0198.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:19:20+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0199.xml.gz
INFO root [2025-11-22T21:19:41+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0199.xml.gz in 21.7749 seconds: 30000 PMIDs, 4732 DOIs, 364 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:19:41+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0199.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:19:41+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0200.xml.gz
INFO root [2025-11-22T21:20:01+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0200.xml.gz in 19.5797 seconds: 30000 PMIDs, 11098 DOIs, 1976 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:20:01+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0200.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:20:01+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0201.xml.gz
INFO root [2025-11-22T21:20:23+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0201.xml.gz in 22.4321 seconds: 30000 PMIDs, 15459 DOIs, 2262 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:20:23+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0201.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:20:23+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0202.xml.gz
INFO root [2025-11-22T21:20:48+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0202.xml.gz in 24.2119 seconds: 30000 PMIDs, 13490 DOIs, 1735 PMCs, 30000 titles with the following PubStatuses: ['accepted', 'entrez', 'medline', 'pubmed', 'received', 'revised'].
WARNING root [2025-11-22T21:20:48+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0202.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:20:48+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0203.xml.gz
INFO root [2025-11-22T21:21:16+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0203.xml.gz in 28.2697 seconds: 30000 PMIDs, 17970 DOIs, 1986 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:21:16+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0203.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:21:16+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0204.xml.gz
INFO root [2025-11-22T21:21:44+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0204.xml.gz in 27.8042 seconds: 30000 PMIDs, 19368 DOIs, 1559 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:21:44+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0204.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:21:44+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0205.xml.gz
INFO root [2025-11-22T21:22:13+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0205.xml.gz in 29.1150 seconds: 30000 PMIDs, 17926 DOIs, 2297 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:22:13+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0205.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:22:13+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0206.xml.gz
INFO root [2025-11-22T21:22:42+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0206.xml.gz in 28.9971 seconds: 30000 PMIDs, 18789 DOIs, 2524 PMCs, 30000 titles with the following PubStatuses: ['accepted', 'entrez', 'medline', 'pubmed', 'received', 'revised'].
WARNING root [2025-11-22T21:22:42+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0206.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:22:42+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0207.xml.gz
INFO root [2025-11-22T21:23:09+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0207.xml.gz in 26.8746 seconds: 30000 PMIDs, 13396 DOIs, 1826 PMCs, 30000 titles with the following PubStatuses: ['accepted', 'entrez', 'medline', 'pubmed', 'received', 'revised'].
WARNING root [2025-11-22T21:23:09+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0207.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:23:09+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0208.xml.gz
INFO root [2025-11-22T21:23:41+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0208.xml.gz in 32.8212 seconds: 30000 PMIDs, 18386 DOIs, 3177 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:23:41+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0208.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:23:41+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0209.xml.gz
INFO root [2025-11-22T21:24:08+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0209.xml.gz in 26.2150 seconds: 30000 PMIDs, 19592 DOIs, 3757 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:24:08+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0209.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:24:08+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0210.xml.gz
INFO root [2025-11-22T21:24:45+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0210.xml.gz in 37.1200 seconds: 30000 PMIDs, 19682 DOIs, 4104 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:24:45+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0210.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:24:45+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0211.xml.gz
INFO root [2025-11-22T21:25:09+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0211.xml.gz in 24.4274 seconds: 30000 PMIDs, 15956 DOIs, 2408 PMCs, 30000 titles with the following PubStatuses: ['accepted', 'entrez', 'medline', 'pubmed', 'received', 'revised'].
WARNING root [2025-11-22T21:25:09+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0211.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:25:09+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0212.xml.gz
INFO root [2025-11-22T21:25:36+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0212.xml.gz in 26.9231 seconds: 30000 PMIDs, 15425 DOIs, 2132 PMCs, 30000 titles with the following PubStatuses: ['accepted', 'entrez', 'medline', 'pubmed', 'received', 'revised'].
WARNING root [2025-11-22T21:25:36+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0212.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:25:36+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0213.xml.gz
INFO root [2025-11-22T21:26:06+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0213.xml.gz in 30.0007 seconds: 30000 PMIDs, 15721 DOIs, 3829 PMCs, 30000 titles with the following PubStatuses: ['accepted', 'entrez', 'medline', 'pubmed', 'received', 'revised'].
WARNING root [2025-11-22T21:26:06+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0213.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:26:06+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0214.xml.gz
INFO root [2025-11-22T21:26:36+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0214.xml.gz in 30.2636 seconds: 30000 PMIDs, 16504 DOIs, 3420 PMCs, 30000 titles with the following PubStatuses: ['accepted', 'entrez', 'medline', 'pubmed', 'received', 'revised'].
WARNING root [2025-11-22T21:26:36+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0214.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:26:36+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0215.xml.gz
INFO root [2025-11-22T21:27:07+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0215.xml.gz in 30.2454 seconds: 30000 PMIDs, 14730 DOIs, 1620 PMCs, 30000 titles with the following PubStatuses: ['accepted', 'entrez', 'medline', 'pubmed', 'received', 'revised'].
WARNING root [2025-11-22T21:27:07+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0215.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:27:07+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0216.xml.gz
INFO root [2025-11-22T21:27:32+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0216.xml.gz in 25.3665 seconds: 30000 PMIDs, 15679 DOIs, 1537 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:27:32+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0216.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:27:32+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0217.xml.gz
INFO root [2025-11-22T21:28:01+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0217.xml.gz in 28.4712 seconds: 30000 PMIDs, 12153 DOIs, 733 PMCs, 30000 titles with the following PubStatuses: ['accepted', 'entrez', 'medline', 'pubmed', 'received', 'revised'].
WARNING root [2025-11-22T21:28:01+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0217.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:28:01+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0218.xml.gz
INFO root [2025-11-22T21:28:22+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0218.xml.gz in 21.8939 seconds: 30000 PMIDs, 7962 DOIs, 520 PMCs, 30000 titles with the following PubStatuses: ['accepted', 'entrez', 'medline', 'pubmed', 'received', 'revised'].
WARNING root [2025-11-22T21:28:22+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0218.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:28:22+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0219.xml.gz
INFO root [2025-11-22T21:28:49+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0219.xml.gz in 26.5941 seconds: 30000 PMIDs, 10686 DOIs, 1509 PMCs, 30000 titles with the following PubStatuses: ['accepted', 'entrez', 'medline', 'pubmed', 'received'].
WARNING root [2025-11-22T21:28:49+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0219.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:28:49+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0220.xml.gz
INFO root [2025-11-22T21:29:23+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0220.xml.gz in 34.2427 seconds: 30000 PMIDs, 16347 DOIs, 1911 PMCs, 30000 titles with the following PubStatuses: ['accepted', 'entrez', 'medline', 'pubmed', 'received'].
WARNING root [2025-11-22T21:29:23+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0220.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:29:23+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0221.xml.gz
INFO root [2025-11-22T21:29:48+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0221.xml.gz in 24.6277 seconds: 30000 PMIDs, 13884 DOIs, 1310 PMCs, 30000 titles with the following PubStatuses: ['accepted', 'entrez', 'medline', 'pubmed', 'received', 'revised'].
WARNING root [2025-11-22T21:29:48+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0221.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:29:48+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0222.xml.gz
INFO root [2025-11-22T21:30:15+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0222.xml.gz in 27.1505 seconds: 30000 PMIDs, 12041 DOIs, 819 PMCs, 30000 titles with the following PubStatuses: ['accepted', 'entrez', 'medline', 'pubmed', 'received', 'revised'].
WARNING root [2025-11-22T21:30:15+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0222.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:30:15+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0223.xml.gz
INFO root [2025-11-22T21:30:44+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0223.xml.gz in 29.4148 seconds: 30000 PMIDs, 17904 DOIs, 1898 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:30:44+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0223.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:30:44+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0224.xml.gz
INFO root [2025-11-22T21:31:19+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0224.xml.gz in 35.0197 seconds: 30000 PMIDs, 17581 DOIs, 1805 PMCs, 30000 titles with the following PubStatuses: ['accepted', 'entrez', 'medline', 'pubmed', 'received', 'revised'].
WARNING root [2025-11-22T21:31:19+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0224.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:31:19+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0225.xml.gz
INFO root [2025-11-22T21:31:51+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0225.xml.gz in 31.0570 seconds: 30000 PMIDs, 14901 DOIs, 2165 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:31:51+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0225.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:31:51+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0226.xml.gz
INFO root [2025-11-22T21:32:23+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0226.xml.gz in 32.6971 seconds: 30000 PMIDs, 17116 DOIs, 4628 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:32:23+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0226.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:32:23+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0227.xml.gz
INFO root [2025-11-22T21:32:47+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0227.xml.gz in 24.2136 seconds: 30000 PMIDs, 17922 DOIs, 2392 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:32:47+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0227.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:32:47+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0228.xml.gz
INFO root [2025-11-22T21:33:14+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0228.xml.gz in 26.8000 seconds: 30000 PMIDs, 16819 DOIs, 1601 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:33:14+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0228.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:33:14+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0229.xml.gz
INFO root [2025-11-22T21:33:42+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0229.xml.gz in 27.7793 seconds: 30000 PMIDs, 15174 DOIs, 1663 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:33:42+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0229.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:33:42+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0230.xml.gz
INFO root [2025-11-22T21:33:57+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0230.xml.gz in 15.1345 seconds: 30000 PMIDs, 5661 DOIs, 387 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:33:57+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0230.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:33:57+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0231.xml.gz
INFO root [2025-11-22T21:34:22+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0231.xml.gz in 24.5212 seconds: 30000 PMIDs, 10725 DOIs, 1842 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:34:22+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0231.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:34:22+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0232.xml.gz
INFO root [2025-11-22T21:34:53+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0232.xml.gz in 31.0564 seconds: 30000 PMIDs, 13802 DOIs, 2294 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:34:53+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0232.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:34:53+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0233.xml.gz
INFO root [2025-11-22T21:35:18+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0233.xml.gz in 24.8480 seconds: 30000 PMIDs, 14893 DOIs, 2447 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:35:18+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0233.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:35:18+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0234.xml.gz
INFO root [2025-11-22T21:35:45+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0234.xml.gz in 27.7268 seconds: 30000 PMIDs, 14818 DOIs, 2085 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:35:45+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0234.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:35:45+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0235.xml.gz
INFO root [2025-11-22T21:36:13+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0235.xml.gz in 27.2672 seconds: 30000 PMIDs, 17293 DOIs, 1883 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:36:13+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0235.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:36:13+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0236.xml.gz
INFO root [2025-11-22T21:36:40+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0236.xml.gz in 27.0704 seconds: 30000 PMIDs, 16343 DOIs, 1611 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:36:40+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0236.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:36:40+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0237.xml.gz
INFO root [2025-11-22T21:37:03+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0237.xml.gz in 23.3942 seconds: 30000 PMIDs, 15738 DOIs, 1456 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:37:03+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0237.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:37:03+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0238.xml.gz
INFO root [2025-11-22T21:37:29+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0238.xml.gz in 25.7884 seconds: 30000 PMIDs, 12831 DOIs, 994 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:37:29+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0238.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:37:29+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0239.xml.gz
INFO root [2025-11-22T21:37:56+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0239.xml.gz in 26.6499 seconds: 30000 PMIDs, 13228 DOIs, 1050 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:37:56+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0239.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:37:56+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0240.xml.gz
INFO root [2025-11-22T21:38:22+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0240.xml.gz in 26.6749 seconds: 30000 PMIDs, 14995 DOIs, 1195 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:38:22+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0240.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:38:22+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0241.xml.gz
INFO root [2025-11-22T21:38:50+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0241.xml.gz in 27.5480 seconds: 30000 PMIDs, 14371 DOIs, 1498 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:38:50+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0241.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:38:50+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0242.xml.gz
INFO root [2025-11-22T21:39:13+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0242.xml.gz in 23.4538 seconds: 30000 PMIDs, 15079 DOIs, 1319 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:39:13+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0242.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:39:13+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0243.xml.gz
INFO root [2025-11-22T21:39:40+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0243.xml.gz in 26.8401 seconds: 30000 PMIDs, 14732 DOIs, 1426 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:39:40+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0243.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:39:40+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0244.xml.gz
INFO root [2025-11-22T21:40:03+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0244.xml.gz in 23.0724 seconds: 30000 PMIDs, 11030 DOIs, 1253 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:40:03+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0244.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:40:03+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0245.xml.gz
INFO root [2025-11-22T21:40:25+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0245.xml.gz in 22.2140 seconds: 30000 PMIDs, 17041 DOIs, 1851 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:40:25+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0245.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:40:25+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0246.xml.gz
INFO root [2025-11-22T21:40:51+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0246.xml.gz in 25.4246 seconds: 30000 PMIDs, 14919 DOIs, 1524 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:40:51+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0246.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:40:51+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0247.xml.gz
INFO root [2025-11-22T21:41:17+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0247.xml.gz in 26.6604 seconds: 30000 PMIDs, 16071 DOIs, 2428 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:41:17+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0247.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:41:17+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0248.xml.gz
INFO root [2025-11-22T21:41:39+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0248.xml.gz in 22.0359 seconds: 30000 PMIDs, 13977 DOIs, 1459 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:41:39+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0248.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:41:39+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0249.xml.gz
INFO root [2025-11-22T21:42:14+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0249.xml.gz in 34.6425 seconds: 30000 PMIDs, 19614 DOIs, 2692 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:42:14+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0249.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:42:14+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0250.xml.gz
INFO root [2025-11-22T21:42:49+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0250.xml.gz in 34.5480 seconds: 30000 PMIDs, 20812 DOIs, 2848 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:42:49+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0250.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:42:49+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0251.xml.gz
INFO root [2025-11-22T21:43:28+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0251.xml.gz in 38.9737 seconds: 30000 PMIDs, 21349 DOIs, 2681 PMCs, 30000 titles with the following PubStatuses: ['accepted', 'entrez', 'medline', 'pubmed', 'received', 'revised'].
WARNING root [2025-11-22T21:43:28+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0251.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:43:28+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0252.xml.gz
INFO root [2025-11-22T21:43:55+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0252.xml.gz in 27.3580 seconds: 30000 PMIDs, 20038 DOIs, 2140 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:43:55+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0252.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:43:55+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0253.xml.gz
INFO root [2025-11-22T21:44:31+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0253.xml.gz in 36.2252 seconds: 30000 PMIDs, 20736 DOIs, 2533 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:44:31+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0253.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:44:31+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0254.xml.gz
INFO root [2025-11-22T21:45:04+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0254.xml.gz in 32.7721 seconds: 30000 PMIDs, 20333 DOIs, 2745 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:45:04+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0254.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:45:04+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0255.xml.gz
INFO root [2025-11-22T21:45:32+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0255.xml.gz in 27.6734 seconds: 30000 PMIDs, 19085 DOIs, 2120 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:45:32+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0255.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:45:32+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0256.xml.gz
INFO root [2025-11-22T21:46:09+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0256.xml.gz in 37.7780 seconds: 30000 PMIDs, 20916 DOIs, 2930 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:46:09+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0256.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:46:09+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0257.xml.gz
INFO root [2025-11-22T21:46:41+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0257.xml.gz in 31.6980 seconds: 30000 PMIDs, 19296 DOIs, 2371 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:46:41+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0257.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:46:41+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0258.xml.gz
INFO root [2025-11-22T21:47:08+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0258.xml.gz in 26.9105 seconds: 30000 PMIDs, 20035 DOIs, 2145 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:47:08+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0258.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:47:08+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0259.xml.gz
INFO root [2025-11-22T21:47:43+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0259.xml.gz in 34.7231 seconds: 30000 PMIDs, 19153 DOIs, 2215 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:47:43+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0259.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:47:43+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0260.xml.gz
INFO root [2025-11-22T21:48:10+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0260.xml.gz in 27.0994 seconds: 30000 PMIDs, 19375 DOIs, 2393 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:48:10+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0260.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:48:10+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0261.xml.gz
INFO root [2025-11-22T21:48:40+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0261.xml.gz in 30.0955 seconds: 30000 PMIDs, 18799 DOIs, 1899 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:48:40+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0261.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:48:40+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0262.xml.gz
INFO root [2025-11-22T21:49:16+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0262.xml.gz in 36.0751 seconds: 30000 PMIDs, 19315 DOIs, 2488 PMCs, 30000 titles with the following PubStatuses: ['accepted', 'entrez', 'medline', 'pubmed', 'received', 'revised'].
WARNING root [2025-11-22T21:49:16+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0262.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:49:16+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0263.xml.gz
INFO root [2025-11-22T21:49:44+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0263.xml.gz in 28.2713 seconds: 30000 PMIDs, 20435 DOIs, 2104 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:49:44+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0263.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:49:44+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0264.xml.gz
INFO root [2025-11-22T21:50:16+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0264.xml.gz in 32.0911 seconds: 30000 PMIDs, 18877 DOIs, 2624 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:50:16+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0264.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:50:16+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0265.xml.gz
INFO root [2025-11-22T21:50:48+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0265.xml.gz in 31.3423 seconds: 30000 PMIDs, 19567 DOIs, 2240 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:50:48+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0265.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:50:48+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0266.xml.gz
INFO root [2025-11-22T21:51:20+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0266.xml.gz in 31.7438 seconds: 30000 PMIDs, 17865 DOIs, 1740 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:51:20+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0266.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:51:20+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0267.xml.gz
INFO root [2025-11-22T21:51:52+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0267.xml.gz in 32.6099 seconds: 30000 PMIDs, 19402 DOIs, 2696 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:51:52+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0267.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:51:52+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0268.xml.gz
INFO root [2025-11-22T21:52:20+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0268.xml.gz in 28.1326 seconds: 30000 PMIDs, 17830 DOIs, 2414 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:52:20+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0268.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:52:20+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0269.xml.gz
INFO root [2025-11-22T21:52:52+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0269.xml.gz in 31.6959 seconds: 30000 PMIDs, 19011 DOIs, 2193 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:52:52+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0269.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:52:52+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0270.xml.gz
INFO root [2025-11-22T21:53:25+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0270.xml.gz in 32.5735 seconds: 30000 PMIDs, 18653 DOIs, 2373 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:53:25+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0270.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:53:25+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0271.xml.gz
INFO root [2025-11-22T21:53:51+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0271.xml.gz in 26.4174 seconds: 30000 PMIDs, 18347 DOIs, 2365 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:53:51+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0271.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:53:51+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0272.xml.gz
INFO root [2025-11-22T21:54:21+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0272.xml.gz in 29.9936 seconds: 30000 PMIDs, 18626 DOIs, 2096 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:54:21+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0272.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:54:21+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0273.xml.gz
INFO root [2025-11-22T21:54:56+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0273.xml.gz in 34.8758 seconds: 30000 PMIDs, 18932 DOIs, 2464 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:54:56+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0273.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:54:56+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0274.xml.gz
INFO root [2025-11-22T21:55:23+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0274.xml.gz in 27.5386 seconds: 30000 PMIDs, 18782 DOIs, 2200 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:55:23+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0274.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:55:23+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0275.xml.gz
INFO root [2025-11-22T21:55:54+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0275.xml.gz in 30.9779 seconds: 30000 PMIDs, 18315 DOIs, 2322 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:55:54+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0275.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:55:54+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0276.xml.gz
INFO root [2025-11-22T21:56:21+0000]: Parsed 30000 articles from PubMed babel_downloads/PubMed/baseline/pubmed25n0276.xml.gz in 26.6370 seconds: 30000 PMIDs, 18945 DOIs, 2352 PMCs, 30000 titles with the following PubStatuses: ['entrez', 'medline', 'pubmed'].
WARNING root [2025-11-22T21:56:21+0000]: Skipping non-gzipped-XML file babel_downloads/PubMed/baseline/pubmed25n0276.xml.gz.md5 in PubMed files.
INFO root [2025-11-22T21:56:21+0000]: Parsing PubMed Baseline babel_downloads/PubMed/baseline/pubmed25n0277.xml.gz
srun: Job step aborted: Waiting up to 32 seconds for job step to finish.
[2025-11-22T16:56:27.022] error: *** STEP 45578.0 ON compute-13-2 CANCELLED AT 2025-11-22T16:56:27 DUE TO TIME LIMIT ***
[2025-11-22T16:56:27.022] error: *** JOB 45578 ON compute-13-2 CANCELLED AT 2025-11-22T16:56:27 DUE TO TIME LIMIT ***
Will exit after finishing currently running jobs (scheduler).
INFO snakemake.logging [2025-11-22T21:56:27+0000]: Will exit after finishing currently running jobs (scheduler).
Will exit after finishing currently running jobs (scheduler).
INFO snakemake.logging [2025-11-22T21:56:27+0000]: Will exit after finishing currently running jobs (scheduler).