Index of /var/babel_outputs/2026jul22/logs/
../
rule_anatomy/ 30-Jul-2026 19:43 -
rule_anatomy_cl_ids/ 30-Jul-2026 19:43 -
rule_anatomy_compendia/ 30-Jul-2026 19:43 -
rule_anatomy_emapa_ids/ 30-Jul-2026 19:43 -
rule_anatomy_go_ids/ 30-Jul-2026 19:43 -
rule_anatomy_mesh_ids/ 30-Jul-2026 19:43 -
rule_anatomy_ncit_ids/ 30-Jul-2026 19:43 -
rule_anatomy_uberon_ids/ 30-Jul-2026 19:43 -
rule_anatomy_umls_ids/ 30-Jul-2026 19:43 -
rule_cell_line/ 30-Jul-2026 19:43 -
rule_cell_line_compendia/ 30-Jul-2026 19:43 -
rule_check_activity/ 30-Jul-2026 19:43 -
rule_check_anatomical_entity/ 30-Jul-2026 19:43 -
rule_check_anatomy_completeness/ 30-Jul-2026 19:43 -
rule_check_cell/ 30-Jul-2026 19:43 -
rule_check_cell_line/ 30-Jul-2026 19:43 -
rule_check_cell_line_completeness/ 30-Jul-2026 19:43 -
rule_check_cellular_component/ 30-Jul-2026 19:43 -
rule_check_chemical_completeness/ 30-Jul-2026 19:43 -
rule_check_chemical_entity/ 30-Jul-2026 19:43 -
rule_check_chemical_mixture/ 30-Jul-2026 19:43 -
rule_check_compendia_files/ 30-Jul-2026 19:43 -
rule_check_complex_mixture/ 30-Jul-2026 19:43 -
rule_check_conflation_files/ 30-Jul-2026 19:43 -
rule_check_disease/ 30-Jul-2026 19:43 -
rule_check_disease_completeness/ 30-Jul-2026 19:43 -
rule_check_drug/ 30-Jul-2026 19:43 -
rule_check_food/ 30-Jul-2026 19:43 -
rule_check_for_duplicate_clique_leaders/ 30-Jul-2026 19:43 -
rule_check_for_duplicate_curies/ 30-Jul-2026 19:43 -
rule_check_for_identically_labeled_cliques/ 30-Jul-2026 19:43 -
rule_check_gene/ 30-Jul-2026 19:43 -
rule_check_gene_completeness/ 30-Jul-2026 19:43 -
rule_check_genefamily/ 30-Jul-2026 19:43 -
rule_check_genefamily_completeness/ 30-Jul-2026 19:43 -
rule_check_gross_anatomical_structure/ 30-Jul-2026 19:43 -
rule_check_macromolecular_complex/ 30-Jul-2026 19:43 -
rule_check_macromolecular_complex_completeness/ 30-Jul-2026 19:43 -
rule_check_molecular_mixture/ 30-Jul-2026 19:43 -
rule_check_pathway/ 30-Jul-2026 19:43 -
rule_check_phenotypic_feature/ 30-Jul-2026 19:43 -
rule_check_polypeptide/ 30-Jul-2026 19:43 -
rule_check_process/ 30-Jul-2026 19:43 -
rule_check_process_completeness/ 30-Jul-2026 19:43 -
rule_check_protein/ 30-Jul-2026 19:43 -
rule_check_protein_completeness/ 30-Jul-2026 19:43 -
rule_check_publications/ 30-Jul-2026 19:43 -
rule_check_publications_completeness/ 30-Jul-2026 19:43 -
rule_check_small_molecule/ 30-Jul-2026 19:43 -
rule_check_synonyms_gzipped_files/ 30-Jul-2026 19:43 -
rule_check_taxon/ 30-Jul-2026 19:43 -
rule_check_taxon_completeness/ 30-Jul-2026 19:43 -
rule_chembl_labels_and_smiles/ 30-Jul-2026 19:43 -
rule_chemical/ 30-Jul-2026 19:43 -
rule_chemical_chebi_ids/ 30-Jul-2026 19:43 -
rule_chemical_chembl_ids/ 30-Jul-2026 19:43 -
rule_chemical_compendia/ 30-Jul-2026 19:43 -
rule_chemical_drugbank_food_extracts/ 30-Jul-2026 19:43 -
rule_chemical_drugbank_ids/ 30-Jul-2026 19:43 -
rule_chemical_drugcentral_ids/ 30-Jul-2026 19:43 -
rule_chemical_gtopdb_ids/ 30-Jul-2026 19:43 -
rule_chemical_hmdb_ids/ 30-Jul-2026 19:43 -
rule_chemical_mesh_ids/ 30-Jul-2026 19:43 -
rule_chemical_ncit_food_codes/ 30-Jul-2026 19:43 -
rule_chemical_ncit_nonfood_codes/ 30-Jul-2026 19:43 -
rule_chemical_pubchem_ids/ 30-Jul-2026 19:43 -
rule_chemical_rxnorm_ids/ 30-Jul-2026 19:43 -
rule_chemical_umls_ids/ 30-Jul-2026 19:43 -
rule_chemical_unichem_concordia/ 30-Jul-2026 19:43 -
rule_chemical_unii_ids/ 30-Jul-2026 19:43 -
rule_compress_umls/ 30-Jul-2026 19:43 -
rule_disease/ 30-Jul-2026 19:43 -
rule_disease_compendia/ 30-Jul-2026 19:43 -
rule_disease_doid_ids/ 30-Jul-2026 19:43 -
rule_disease_efo_ids/ 30-Jul-2026 19:43 -
rule_disease_hp_ids/ 30-Jul-2026 19:43 -
rule_disease_hp_taxa/ 30-Jul-2026 19:43 -
rule_disease_manual_concord/ 30-Jul-2026 19:43 -
rule_disease_mesh_ids/ 30-Jul-2026 19:43 -
rule_disease_mondo_ids/ 30-Jul-2026 19:43 -
rule_disease_mp_ids/ 30-Jul-2026 19:43 -
rule_disease_mp_taxa/ 30-Jul-2026 19:43 -
rule_disease_ncit_ids/ 30-Jul-2026 19:43 -
rule_disease_omim_ids/ 30-Jul-2026 19:43 -
rule_disease_orphanet_ids/ 30-Jul-2026 19:43 -
rule_disease_umls_ids/ 30-Jul-2026 19:43 -
rule_download_pubmed/ 30-Jul-2026 19:43 -
rule_download_rxnorm/ 30-Jul-2026 19:43 -
rule_download_unichem_reference/ 30-Jul-2026 19:43 -
rule_download_unichem_structure/ 30-Jul-2026 19:43 -
rule_drugchemical_conflated_synonyms/ 30-Jul-2026 19:43 -
rule_drugchemical_conflation/ 30-Jul-2026 19:43 -
rule_export_compendia_to_duckdb/ 30-Jul-2026 19:43 -
rule_export_conflation_to_duckdb/ 30-Jul-2026 19:43 -
rule_export_intermediate_files_to_duckdb/ 30-Jul-2026 19:43 -
rule_export_synonyms_to_duckdb/ 30-Jul-2026 19:43 -
rule_extract_taxon_ids_from_uniprotkb/ 30-Jul-2026 19:43 -
rule_filter_unichem/ 30-Jul-2026 19:43 -
rule_gene/ 30-Jul-2026 19:43 -
rule_gene_compendia/ 30-Jul-2026 19:43 -
rule_gene_ensembl_ids/ 30-Jul-2026 19:43 -
rule_gene_hgnc_ids/ 30-Jul-2026 19:43 -
rule_gene_mods_ids/ 30-Jul-2026 19:43 -
rule_gene_ncbi_ids/ 30-Jul-2026 19:43 -
rule_gene_omim_ids/ 30-Jul-2026 19:43 -
rule_gene_umls_ids/ 30-Jul-2026 19:43 -
rule_genefamily/ 30-Jul-2026 19:43 -
rule_genefamily_compendia/ 30-Jul-2026 19:43 -
rule_genefamily_hgncfamily_ids/ 30-Jul-2026 19:43 -
rule_genefamily_pantherfamily_ids/ 30-Jul-2026 19:43 -
rule_geneprotein_conflated_synonyms/ 30-Jul-2026 19:43 -
rule_geneprotein_conflation/ 30-Jul-2026 19:43 -
rule_geneprotein_uniprot_relationships/ 30-Jul-2026 19:43 -
rule_generate_clique_leader_report/ 30-Jul-2026 19:43 -
rule_generate_cliques_table/ 30-Jul-2026 19:43 -
rule_generate_compendia_summary_report/ 30-Jul-2026 19:43 -
rule_generate_content_report_for_compendium_Ana..> 30-Jul-2026 19:43 -
rule_generate_content_report_for_compendium_Bio..> 30-Jul-2026 19:43 -
rule_generate_content_report_for_compendium_Cell/ 30-Jul-2026 19:43 -
rule_generate_content_report_for_compendium_Cel..> 30-Jul-2026 19:43 -
rule_generate_content_report_for_compendium_Cel..> 30-Jul-2026 19:43 -
rule_generate_content_report_for_compendium_Che..> 30-Jul-2026 19:43 -
rule_generate_content_report_for_compendium_Che..> 30-Jul-2026 19:43 -
rule_generate_content_report_for_compendium_Com..> 30-Jul-2026 19:43 -
rule_generate_content_report_for_compendium_Dis..> 30-Jul-2026 19:43 -
rule_generate_content_report_for_compendium_Drug/ 30-Jul-2026 19:43 -
rule_generate_content_report_for_compendium_Food/ 30-Jul-2026 19:43 -
rule_generate_content_report_for_compendium_Gene/ 30-Jul-2026 19:43 -
rule_generate_content_report_for_compendium_Gen..> 30-Jul-2026 19:43 -
rule_generate_content_report_for_compendium_Gro..> 30-Jul-2026 19:43 -
rule_generate_content_report_for_compendium_Mac..> 30-Jul-2026 19:43 -
rule_generate_content_report_for_compendium_Mol..> 30-Jul-2026 19:43 -
rule_generate_content_report_for_compendium_Mol..> 30-Jul-2026 19:43 -
rule_generate_content_report_for_compendium_Org..> 30-Jul-2026 19:43 -
rule_generate_content_report_for_compendium_Pat..> 30-Jul-2026 19:43 -
rule_generate_content_report_for_compendium_Phe..> 30-Jul-2026 19:43 -
rule_generate_content_report_for_compendium_Pol..> 30-Jul-2026 19:43 -
rule_generate_content_report_for_compendium_Pro..> 30-Jul-2026 19:43 -
rule_generate_content_report_for_compendium_Pub..> 30-Jul-2026 19:43 -
rule_generate_content_report_for_compendium_Sma..> 30-Jul-2026 19:43 -
rule_generate_content_report_for_compendium_umls/ 30-Jul-2026 19:43 -
rule_generate_curie_report/ 30-Jul-2026 19:43 -
rule_generate_kgx/ 30-Jul-2026 19:43 -
rule_generate_mapping_sources_table/ 30-Jul-2026 19:43 -
rule_generate_prefix_comparison/ 30-Jul-2026 19:43 -
rule_generate_prefix_report/ 30-Jul-2026 19:43 -
rule_generate_prefix_table/ 30-Jul-2026 19:43 -
rule_generate_pubmed_compendia/ 30-Jul-2026 19:43 -
rule_generate_pubmed_concords/ 30-Jul-2026 19:43 -
rule_generate_sapbert_training_data/ 30-Jul-2026 19:43 -
rule_get_CLO_labels/ 30-Jul-2026 19:43 -
rule_get_EC/ 30-Jul-2026 19:43 -
rule_get_EC_labels/ 30-Jul-2026 19:43 -
rule_get_EFO/ 30-Jul-2026 19:43 -
rule_get_EFO_labels/ 30-Jul-2026 19:43 -
rule_get_HMDB/ 30-Jul-2026 19:43 -
rule_get_SMPDB/ 30-Jul-2026 19:43 -
rule_get_SMPDB_labels/ 30-Jul-2026 19:43 -
rule_get_anatomy_obo_relationships/ 30-Jul-2026 19:43 -
rule_get_anatomy_umls_relationships/ 30-Jul-2026 19:43 -
rule_get_chebi/ 30-Jul-2026 19:43 -
rule_get_chebi_concord/ 30-Jul-2026 19:43 -
rule_get_chembl/ 30-Jul-2026 19:43 -
rule_get_chemical_drugcentral_relationships/ 30-Jul-2026 19:43 -
rule_get_chemical_mesh_relationships/ 30-Jul-2026 19:43 -
rule_get_chemical_pubchem_cas_concord/ 30-Jul-2026 19:43 -
rule_get_chemical_pubchem_mesh_concord/ 30-Jul-2026 19:43 -
rule_get_chemical_rxnorm_relationships/ 30-Jul-2026 19:43 -
rule_get_chemical_umls_relationships/ 30-Jul-2026 19:43 -
rule_get_chemical_unichem_relationships/ 30-Jul-2026 19:43 -
rule_get_chemical_wikipedia_relationships/ 30-Jul-2026 19:43 -
rule_get_clo/ 30-Jul-2026 19:43 -
rule_get_clo_ids/ 30-Jul-2026 19:43 -
rule_get_complexportal/ 30-Jul-2026 19:43 -
rule_get_complexportal_labels_and_synonyms/ 30-Jul-2026 19:43 -
rule_get_disease_doid_relationships/ 30-Jul-2026 19:43 -
rule_get_disease_efo_relationships/ 30-Jul-2026 19:43 -
rule_get_disease_obo_relationships/ 30-Jul-2026 19:43 -
rule_get_disease_umls_relationships/ 30-Jul-2026 19:43 -
rule_get_doid/ 30-Jul-2026 19:43 -
rule_get_doid_labels_and_synonyms/ 30-Jul-2026 19:43 -
rule_get_drugbank_labels_and_synonyms/ 30-Jul-2026 19:43 -
rule_get_drugbank_vocabulary/ 30-Jul-2026 19:43 -
rule_get_drugcentral/ 30-Jul-2026 19:43 -
rule_get_ensembl/ 30-Jul-2026 19:43 -
rule_get_gene_medgen_relationships/ 30-Jul-2026 19:43 -
rule_get_gene_ncbigene_ensembl_relationships/ 30-Jul-2026 19:43 -
rule_get_gene_ncbigene_relationships/ 30-Jul-2026 19:43 -
rule_get_gene_umls_relationships/ 30-Jul-2026 19:43 -
rule_get_gtopdb/ 30-Jul-2026 19:43 -
rule_get_gtopdb_inchikey_concord/ 30-Jul-2026 19:43 -
rule_get_hgnc/ 30-Jul-2026 19:43 -
rule_get_hgnc_labels_and_synonyms/ 30-Jul-2026 19:43 -
rule_get_hgncfamily/ 30-Jul-2026 19:43 -
rule_get_hgncfamily_labels/ 30-Jul-2026 19:43 -
rule_get_icrdf/ 30-Jul-2026 19:43 -
rule_get_mesh/ 30-Jul-2026 19:43 -
rule_get_mesh_labels/ 30-Jul-2026 19:43 -
rule_get_mods/ 30-Jul-2026 19:43 -
rule_get_mods_labels/ 30-Jul-2026 19:43 -
rule_get_ncbigene/ 30-Jul-2026 19:43 -
rule_get_ncbigene_labels_synonyms_and_taxa/ 30-Jul-2026 19:43 -
rule_get_ncbitaxon/ 30-Jul-2026 19:43 -
rule_get_ncit/ 30-Jul-2026 19:43 -
rule_get_obo_descriptions/ 30-Jul-2026 19:43 -
rule_get_obo_labels/ 30-Jul-2026 19:43 -
rule_get_obo_synonyms/ 30-Jul-2026 19:43 -
rule_get_omim/ 30-Jul-2026 19:43 -
rule_get_omim_labels/ 30-Jul-2026 19:43 -
rule_get_orphanet/ 30-Jul-2026 19:43 -
rule_get_orphanet_labels_and_synonyms/ 30-Jul-2026 19:43 -
rule_get_panther_pathway_labels/ 30-Jul-2026 19:43 -
rule_get_panther_pathways/ 30-Jul-2026 19:43 -
rule_get_pantherfamily/ 30-Jul-2026 19:43 -
rule_get_pantherfamily_labels/ 30-Jul-2026 19:43 -
rule_get_process_go_relationships/ 30-Jul-2026 19:43 -
rule_get_process_rhea_relationships/ 30-Jul-2026 19:43 -
rule_get_process_umls_relationships/ 30-Jul-2026 19:43 -
rule_get_protein_ncit_umls_relationships/ 30-Jul-2026 19:43 -
rule_get_protein_ncit_uniprotkb_relationships/ 30-Jul-2026 19:43 -
rule_get_protein_pr_uniprotkb_relationships/ 30-Jul-2026 19:43 -
rule_get_protein_umls_relationships/ 30-Jul-2026 19:43 -
rule_get_protein_uniprotkb_ensembl_relationships/ 30-Jul-2026 19:43 -
rule_get_pubchem/ 30-Jul-2026 19:43 -
rule_get_pubchem_structures/ 30-Jul-2026 19:43 -
rule_get_reactome/ 30-Jul-2026 19:43 -
rule_get_reactome_labels/ 30-Jul-2026 19:43 -
rule_get_rhea/ 30-Jul-2026 19:43 -
rule_get_rhea_labels/ 30-Jul-2026 19:43 -
rule_get_taxon_relationships/ 30-Jul-2026 19:43 -
rule_get_taxon_umls_relationships/ 30-Jul-2026 19:43 -
rule_get_umls_gene_protein_mappings/ 30-Jul-2026 19:43 -
rule_get_umls_labels_and_synonyms/ 30-Jul-2026 19:43 -
rule_get_unii/ 30-Jul-2026 19:43 -
rule_get_uniprotkb_idmapping/ 30-Jul-2026 19:43 -
rule_get_uniprotkb_labels/ 30-Jul-2026 19:43 -
rule_get_uniprotkb_sprot/ 30-Jul-2026 19:43 -
rule_get_uniprotkb_trembl/ 30-Jul-2026 19:43 -
rule_get_wikidata_cell_relationships/ 30-Jul-2026 19:43 -
rule_gtopdb_labels_and_synonyms/ 30-Jul-2026 19:43 -
rule_hmdb_labels_and_synonyms/ 30-Jul-2026 19:43 -
rule_leftover_umls/ 30-Jul-2026 19:43 -
rule_macromolecular_complex/ 30-Jul-2026 19:43 -
rule_macromolecular_complex_compendia/ 30-Jul-2026 19:43 -
rule_ncbitaxon_labels_and_synonyms/ 30-Jul-2026 19:43 -
rule_process/ 30-Jul-2026 19:43 -
rule_process_compendia/ 30-Jul-2026 19:43 -
rule_process_ec_ids/ 30-Jul-2026 19:43 -
rule_process_go_ids/ 30-Jul-2026 19:43 -
rule_process_panther_ids/ 30-Jul-2026 19:43 -
rule_process_reactome_ids/ 30-Jul-2026 19:43 -
rule_process_rhea_ids/ 30-Jul-2026 19:43 -
rule_process_smpdb_ids/ 30-Jul-2026 19:43 -
rule_process_umls_ids/ 30-Jul-2026 19:43 -
rule_protein/ 30-Jul-2026 19:43 -
rule_protein_compendia/ 30-Jul-2026 19:43 -
rule_protein_ensembl_ids/ 30-Jul-2026 19:43 -
rule_protein_mesh_ids/ 30-Jul-2026 19:43 -
rule_protein_pr_ids/ 30-Jul-2026 19:43 -
rule_protein_umls_ids/ 30-Jul-2026 19:43 -
rule_protein_uniprotkb_ids/ 30-Jul-2026 19:43 -
rule_pubchem_labels/ 30-Jul-2026 19:43 -
rule_pubchem_rxnorm_annotations/ 30-Jul-2026 19:43 -
rule_pubchem_rxnorm_relationships/ 30-Jul-2026 19:43 -
rule_pubchem_synonyms/ 30-Jul-2026 19:43 -
rule_rxnorm_relationships/ 30-Jul-2026 19:43 -
rule_taxon/ 30-Jul-2026 19:43 -
rule_taxon_compendia/ 30-Jul-2026 19:43 -
rule_taxon_mesh_ids/ 30-Jul-2026 19:43 -
rule_taxon_ncbi_ids/ 30-Jul-2026 19:43 -
rule_taxon_umls_ids/ 30-Jul-2026 19:43 -
rule_umls_relationships/ 30-Jul-2026 19:43 -
rule_unii_labels_and_synonyms/ 30-Jul-2026 19:43 -
rule_untyped_chemical_compendia/ 30-Jul-2026 19:43 -
rule_verify_pubmed/ 30-Jul-2026 19:43 -
error-report-1.18-run-1.md 30-Jul-2026 19:43 0
error-report-1.18-run-2.md 30-Jul-2026 19:43 104105
sbatch-1.18-fix-food-chemical-issue-run-1.err 30-Jul-2026 19:43 93201
sbatch-1.18-fix-food-chemical-issue-run-1.out 30-Jul-2026 19:43 280
sbatch-1.18-run-1.err 30-Jul-2026 19:43 270238
sbatch-1.18-run-1.out 30-Jul-2026 19:43 0
sbatch-1.18-run-2.err 30-Jul-2026 19:43 63181
sbatch-1.18-run-2.out 30-Jul-2026 19:43 0
sbatch-1.18-run-3.err 30-Jul-2026 19:43 97656
sbatch-1.18-run-3.out 30-Jul-2026 19:43 280
sbatch-1.18.1-run-1.err 30-Jul-2026 19:43 120535
sbatch-1.18.1-run-1.out 30-Jul-2026 19:43 280
sbatch-babel-1.18-vs-2025sep1.err 30-Jul-2026 19:43 9374
sbatch-babel-1.18-vs-2025sep1.out 30-Jul-2026 19:43 0