combined_from:
  Rhea.pull_rhea_ec_concs():
    combined_from: []
    counts:
      concords:
        count_concords: 7858
        count_distinct_curies: 13722
        predicates:
          oio:equivalent: 7858
        prefix_counts:
          oio:equivalent(EC, RHEA): 7858
    created_at: '2025-08-03T05:17:33.477593'
    description: pull_rhea_ec_concs() extracts the EC number/accession number mappings
      from the Rhea RDF file (babel_downloads/RHEA/rhea.rdf).
    name: Rhea.pull_rhea_ec_concs()
    sources:
    - filename: babel_downloads/RHEA/rhea.rdf
      name: rhea.rdf
      sources:
      - name: rhea.rdf
        type: download
        url: https://ftp.expasy.org/databases/rhea/rdf/rhea.rdf.gz
      type: rdf
    type: concord
    url: ''
  build_process_obo_relationships():
    combined_from: []
    counts:
      concords:
        count_concords: 26229
        count_distinct_curies: 33833
        predicates:
          xref: 26229
        prefix_counts:
          xref(EC, GO): 5117
          xref(GO, InterPro): 1
          xref(GO, KEGG.PATHWAY): 3
          xref(GO, KEGG.REACTION): 1783
          xref(GO, MetaCyc): 5523
          xref(GO, MetaCyx): 1
          xref(GO, PMID): 3
          xref(GO, PO): 1
          xref(GO, REACT): 7453
          xref(GO, RESID): 135
          xref(GO, RHEA): 5030
          xref(GO, SABIO-RK): 2
          xref(GO, TCDB): 62
          xref(GO, TXPO): 1
          xref(GO, UM-BBD_enzymeID): 61
          xref(GO, UM-BBD_pathwayID): 126
          xref(GO, UM-BBD_reactionID): 278
          xref(GO, UniPathway): 2
          xref(GO, UniProtKB-KW): 1
          xref(GO, VZ): 119
          xref(GO, WBbt): 2
          xref(GO, WIKIPATHWAYS): 522
          xref(GO, https): 1
          xref(GO, kegg.module): 2
    created_at: '2025-08-03T05:44:37.067259'
    description: Extract GO-GO relationships from UberGraph with get_subclasses_and_xrefs()
      from GO:0007165, GO:0008150 and GO:0003674,with other_prefixes dict_values(['WIKIPATHWAYS',
      'REACT', 'TCDB'])
    name: build_process_obo_relationships()
    sources:
    - name: GO-GO relationships from UberGraph
      type: UberGraph
    type: concord
    url: ''
  umls.build_sets():
    combined_from: []
    counts:
      concords:
        count_concords: 56506
        count_distinct_curies: 92313
        predicates:
          eq: 56506
        prefix_counts:
          eq(GO, UMLS): 56506
    created_at: '2025-08-03T05:41:43.490485'
    description: 'umls.build_sets() using UMLS MRCONSO with prefixes: {''GO'': ''GO''}
      with cui_prefix set to UMLS'
    name: umls.build_sets()
    sources:
    - name: MRCONSO
      type: UMLS
    type: concord
    url: ''
counts:
  cliques: 50168
  eq_ids: 68901
  synonyms: 159397
created_at: '2025-08-05T09:43:42.952540'
description: ''
name: BiologicalProcess.txt
sources: []
type: compendium
url: ''
