{
    "graph_id": "YobokopKG",
    "graph_name": "YobokopKG",
    "graph_description": "",
    "graph_url": "",
    "graph_version": "bdd116c0308604f3",
    "sources": [
        {
            "source_id": "SGD",
            "source_version": "SGD_v1",
            "release_version": "40f6f903a194b195",
            "parsing_version": "1.0",
            "supplementation_version": "1.0",
            "normalization_scheme": {
                "node_normalization_version": "2.0.10",
                "edge_normalization_version": "v3.4.2",
                "normalization_code_version": "1.0",
                "conflation": true,
                "strict": false
            },
            "merge_strategy": "default",
            "normalization_version": "2.0.10_v3.4.2_1.0_conflated",
            "provenance": "infores:sgd",
            "description": "",
            "source_data_url": "",
            "license": "",
            "attribution": "",
            "normalized_nodes.jsonl": {
                "nodes": 14965
            },
            "normalized_edges.jsonl": {
                "edges": 157215
            }
        },
        {
            "source_id": "YeastHistoneMapping",
            "source_version": "yeast_v1",
            "release_version": "238bd202bd7e02e1",
            "parsing_version": "1.0",
            "supplementation_version": "1.0",
            "normalization_scheme": {
                "node_normalization_version": "2.0.10",
                "edge_normalization_version": "v3.4.2",
                "normalization_code_version": "1.0",
                "conflation": true,
                "strict": false
            },
            "merge_strategy": "default",
            "normalization_version": "2.0.10_v3.4.2_1.0_conflated",
            "provenance": "infores:yeasthistones",
            "description": "",
            "source_data_url": "",
            "license": "",
            "attribution": "",
            "normalized_nodes.jsonl": {
                "nodes": 2114689
            },
            "normalized_edges.jsonl": {
                "edges": 3915785
            }
        },
        {
            "source_id": "Costanza2016Data",
            "source_version": "yeast_v1",
            "release_version": "98e0f875bb817a90",
            "parsing_version": "1.0",
            "supplementation_version": "1.0",
            "normalization_scheme": {
                "node_normalization_version": "2.0.10",
                "edge_normalization_version": "v3.4.2",
                "normalization_code_version": "1.0",
                "conflation": true,
                "strict": false
            },
            "merge_strategy": "default",
            "normalization_version": "2.0.10_v3.4.2_1.0_conflated",
            "provenance": "infores:CostanzaGeneticInteractions",
            "description": "",
            "source_data_url": "",
            "license": "",
            "attribution": "",
            "normalized_nodes.jsonl": {
                "nodes": 11866
            },
            "normalized_edges.jsonl": {
                "edges": 25820
            }
        },
        {
            "source_id": "YeastGSE61888",
            "source_version": "yeast_v1_5",
            "release_version": "fbe232101568a510",
            "parsing_version": "1.0",
            "supplementation_version": "1.0",
            "normalization_scheme": {
                "node_normalization_version": "2.0.10",
                "edge_normalization_version": "v3.4.2",
                "normalization_code_version": "1.0",
                "conflation": true,
                "strict": false
            },
            "merge_strategy": "default",
            "normalization_version": "2.0.10_v3.4.2_1.0_conflated",
            "provenance": "infores:Yeast",
            "description": "",
            "source_data_url": "",
            "license": "",
            "attribution": "",
            "normalized_nodes.jsonl": {
                "nodes": 1695539
            },
            "normalized_edges.jsonl": {
                "edges": 1695538
            }
        },
        {
            "source_id": "YeastGaschDiamideGeneExpression",
            "source_version": "yeast_v1_5",
            "release_version": "5742aed6a6d3e3dd",
            "parsing_version": "1.0",
            "supplementation_version": "1.0",
            "normalization_scheme": {
                "node_normalization_version": "2.0.10",
                "edge_normalization_version": "v3.4.2",
                "normalization_code_version": "1.0",
                "conflation": true,
                "strict": false
            },
            "merge_strategy": "default",
            "normalization_version": "2.0.10_v3.4.2_1.0_conflated",
            "provenance": "infores:YeastGasch",
            "description": "",
            "source_data_url": "",
            "license": "",
            "attribution": "",
            "normalized_nodes.jsonl": {
                "nodes": 6133
            },
            "normalized_edges.jsonl": {
                "edges": 6132
            }
        },
        {
            "source_id": "STRING-DB-Yeast",
            "source_version": "v11.5",
            "release_version": "601ccaa11eb0fce5",
            "parsing_version": "1.0",
            "supplementation_version": "1.0",
            "normalization_scheme": {
                "node_normalization_version": "2.0.10",
                "edge_normalization_version": "v3.4.2",
                "normalization_code_version": "1.0",
                "conflation": true,
                "strict": true
            },
            "merge_strategy": "default",
            "normalization_version": "2.0.10_v3.4.2_1.0_conflated_strict",
            "provenance": "infores:STRING",
            "description": "The Search Tool for the Retrieval of Interacting Genes/Proteins (STRING) database provides information on known and predicted protein-protein interactions (both direct and indirect) derived from genomic context predictions, high-throughput laboratory experiments, conserved co-expression, automated text mining, and aggregated knowledge from primary data sources.",
            "source_data_url": "https://string-db.org",
            "license": "All data and download files in STRING are freely available under a 'Creative Commons BY 4.0' license.",
            "attribution": "https://string-db.org/cgi/about?footer_active_subpage=references",
            "normalized_nodes.jsonl": {
                "nodes": 6195
            },
            "normalized_edges.jsonl": {
                "edges": 1725746
            }
        },
        {
            "source_id": "GenomeAllianceOrthologs",
            "source_version": "5.3.0",
            "release_version": "0f76548839e31283",
            "parsing_version": "1.2",
            "supplementation_version": "1.0",
            "normalization_scheme": {
                "node_normalization_version": "2.0.10",
                "edge_normalization_version": "v3.4.2",
                "normalization_code_version": "1.0",
                "conflation": true,
                "strict": true
            },
            "merge_strategy": "default",
            "normalization_version": "2.0.10_v3.4.2_1.0_conflated_strict",
            "provenance": "infores:agrkb",
            "description": "",
            "source_data_url": "",
            "license": "",
            "attribution": "",
            "normalized_nodes.jsonl": {
                "nodes": 94352
            },
            "normalized_edges.jsonl": {
                "edges": 490272
            }
        },
        {
            "source_id": "OntologicalHierarchy",
            "source_version": "2023-05-14",
            "release_version": "7e180b0fc61bff70",
            "parsing_version": "1.4",
            "supplementation_version": "1.0",
            "normalization_scheme": {
                "node_normalization_version": "2.0.10",
                "edge_normalization_version": "v3.4.2",
                "normalization_code_version": "1.0",
                "conflation": true,
                "strict": true
            },
            "merge_strategy": "connected_edge_subset",
            "normalization_version": "2.0.10_v3.4.2_1.0_conflated_strict",
            "provenance": "infores:sri-ontology",
            "description": "Subclass relationships from the redundant version of Ubergraph.",
            "source_data_url": "https://github.com/INCATools/ubergraph",
            "license": "https://raw.githubusercontent.com/INCATools/ubergraph/master/LICENSE.txt",
            "attribution": "https://github.com/INCATools/ubergraph",
            "normalized_nodes.jsonl": {
                "nodes": 1025
            },
            "normalized_edges.jsonl": {
                "edges": 60127421
            }
        }
    ],
    "subgraphs": [
        {
            "graph_id": "Baseline",
            "release_version": "a6d55817d19a2d8b",
            "merge_strategy:": "default",
            "graph_metadata": {
                "graph_id": "Baseline",
                "graph_name": "ROBOKOP Baseline",
                "graph_description": "ROBOKOP (KG) is an open-source biomedical KG that supports the ROBOKOP application. This is the baseline version of that graph, which does not include knowledge sources with specific genetic variants.",
                "graph_url": "http://robokopkg.renci.org/browser/",
                "graph_version": "a6d55817d19a2d8b",
                "sources": [
                    {
                        "source_id": "Biolink",
                        "source_version": "7_28_2021",
                        "release_version": "ee9ae8415cd40dd0",
                        "parsing_version": "1.2",
                        "supplementation_version": "1.0",
                        "normalization_scheme": {
                            "node_normalization_version": "2.0.10",
                            "edge_normalization_version": "v3.4.2",
                            "normalization_code_version": "1.0",
                            "conflation": true,
                            "strict": true
                        },
                        "merge_strategy": "default",
                        "normalization_version": "2.0.10_v3.4.2_1.0_conflated_strict",
                        "provenance": "infores:sri-reference-kg",
                        "description": "A graph based on the Monarch API (https://api.monarchinitiative.org/).",
                        "source_data_url": "https://api.monarchinitiative.org/api/",
                        "license": "https://monarchinitiative.org/about/licensing",
                        "attribution": "https://monarchinitiative.org/about/monarch",
                        "normalized_nodes.jsonl": {
                            "nodes": 237598
                        },
                        "normalized_edges.jsonl": {
                            "edges": 3385819
                        }
                    },
                    {
                        "source_id": "CHEBIProps",
                        "source_version": "6_1_2023",
                        "release_version": "cf762b64da98616d",
                        "parsing_version": "1.1",
                        "supplementation_version": "1.0",
                        "normalization_scheme": {
                            "node_normalization_version": "2.0.10",
                            "edge_normalization_version": "v3.4.2",
                            "normalization_code_version": "1.0",
                            "conflation": true,
                            "strict": true
                        },
                        "merge_strategy": "default",
                        "normalization_version": "2.0.10_v3.4.2_1.0_conflated_strict",
                        "provenance": "infores:chebi-properties",
                        "description": "",
                        "source_data_url": "",
                        "license": "",
                        "attribution": "",
                        "normalized_nodes.jsonl": {
                            "nodes": 23995
                        },
                        "normalized_edges.jsonl": {
                            "edges": 0
                        }
                    },
                    {
                        "source_id": "CTD",
                        "source_version": "May_2023",
                        "release_version": "d3f044cd8fdf8107",
                        "parsing_version": "1.2",
                        "supplementation_version": "1.0",
                        "normalization_scheme": {
                            "node_normalization_version": "2.0.10",
                            "edge_normalization_version": "v3.4.2",
                            "normalization_code_version": "1.0",
                            "conflation": true,
                            "strict": true
                        },
                        "merge_strategy": "default",
                        "normalization_version": "2.0.10_v3.4.2_1.0_conflated_strict",
                        "provenance": "infores:ctd",
                        "description": "The Comparative Toxicogenomics Database (CTD) is an open-source database that provides manually curated information about chemical-gene/protein, chemical-disease, and gene-disease relationships, with additional support for the curated relationships provided by functional and pathway data.",
                        "source_data_url": "http://ctdbase.org/reports/",
                        "license": "http://ctdbase.org/about/publications/#citing",
                        "attribution": "http://ctdbase.org/about/",
                        "normalized_nodes.jsonl": {
                            "nodes": 26145
                        },
                        "normalized_edges.jsonl": {
                            "edges": 157685
                        }
                    },
                    {
                        "source_id": "DrugCentral",
                        "source_version": "8_22_2022",
                        "release_version": "918ed307d50eba24",
                        "parsing_version": "1.3",
                        "supplementation_version": "1.0",
                        "normalization_scheme": {
                            "node_normalization_version": "2.0.10",
                            "edge_normalization_version": "v3.4.2",
                            "normalization_code_version": "1.0",
                            "conflation": true,
                            "strict": true
                        },
                        "merge_strategy": "default",
                        "normalization_version": "2.0.10_v3.4.2_1.0_conflated_strict",
                        "provenance": "infores:drugcentral",
                        "description": "DrugCentral provides open-source data on active ingredients, chemical entities, pharmaceutical products, drug mode of action, indications, and pharmacologic action for approved drugs, derived from information provided by the US Food & Drug Administration, the European Medicines Agency, and the Pharmaceutical and Medical Devices Agency. Caveat: DrugCentral provides limited information on discontinued and drugs approved outside of the US, but users should be aware that that information has not been validated.",
                        "source_data_url": "https://drugcentral.org/download",
                        "license": "https://drugcentral.org/privacy",
                        "attribution": "https://drugcentral.org/about",
                        "normalized_nodes.jsonl": {
                            "nodes": 13126
                        },
                        "normalized_edges.jsonl": {
                            "edges": 233225
                        }
                    },
                    {
                        "source_id": "GtoPdb",
                        "source_version": "2023.1",
                        "release_version": "37d760e85fa22727",
                        "parsing_version": "1.2",
                        "supplementation_version": "1.0",
                        "normalization_scheme": {
                            "node_normalization_version": "2.0.10",
                            "edge_normalization_version": "v3.4.2",
                            "normalization_code_version": "1.0",
                            "conflation": true,
                            "strict": true
                        },
                        "merge_strategy": "default",
                        "normalization_version": "2.0.10_v3.4.2_1.0_conflated_strict",
                        "provenance": "infores:gtopdb",
                        "description": "The International Union of Basic and Clinical Pharmacology (IUPHAR) / British Pharmacological Society (BPS) Guide to Pharmacology database (GtoPdb) provides searchable open-source quantitative information on drug targets and the prescription medicines and experimental drugs that act on them.",
                        "source_data_url": "http://www.guidetopharmacology.org/",
                        "license": "https://www.guidetopharmacology.org/about.jsp#license",
                        "attribution": "https://www.guidetopharmacology.org/citing.jsp",
                        "normalized_nodes.jsonl": {
                            "nodes": 9926
                        },
                        "normalized_edges.jsonl": {
                            "edges": 15860
                        }
                    },
                    {
                        "source_id": "Hetio",
                        "source_version": "1.0",
                        "release_version": "261524dc46df5257",
                        "parsing_version": "1.4",
                        "supplementation_version": "1.0",
                        "normalization_scheme": {
                            "node_normalization_version": "2.0.10",
                            "edge_normalization_version": "v3.4.2",
                            "normalization_code_version": "1.0",
                            "conflation": true,
                            "strict": true
                        },
                        "merge_strategy": "default",
                        "normalization_version": "2.0.10_v3.4.2_1.0_conflated_strict",
                        "provenance": "infores:hetionet",
                        "description": "Hetionet is an open-source biomedical heterogeneous information network (hetnet) or graph-based resource describing relationships uncovered by millions of biomedical research studies over the past fifty years.",
                        "source_data_url": "https://github.com/hetio/hetionet/blob/master/hetnet/json/hetionet-v1.0.json.bz2",
                        "license": "https://het.io/about/",
                        "attribution": "https://het.io/about/",
                        "normalized_nodes.jsonl": {
                            "nodes": 41235
                        },
                        "normalized_edges.jsonl": {
                            "edges": 2106630
                        }
                    },
                    {
                        "source_id": "HGNC",
                        "source_version": "6_2_2023",
                        "release_version": "7abc5f9b46c49780",
                        "parsing_version": "1.1",
                        "supplementation_version": "1.0",
                        "normalization_scheme": {
                            "node_normalization_version": "2.0.10",
                            "edge_normalization_version": "v3.4.2",
                            "normalization_code_version": "1.0",
                            "conflation": true,
                            "strict": true
                        },
                        "merge_strategy": "default",
                        "normalization_version": "2.0.10_v3.4.2_1.0_conflated_strict",
                        "provenance": "infores:hgnc",
                        "description": "The HUGO Gene Nomenclature Committee (HGNC) database provides open access to HGNC-approved unique symbols and names for human genes, gene groups, and associated resources, including links to genomic, proteomic and phenotypic information.",
                        "source_data_url": "ftp://ftp.ebi.ac.uk/pub/databases/genenames/hgnc/archive/",
                        "license": "https://www.genenames.org/about/",
                        "attribution": "https://www.genenames.org/about/",
                        "normalized_nodes.jsonl": {
                            "nodes": 26494
                        },
                        "normalized_edges.jsonl": {
                            "edges": 29980
                        }
                    },
                    {
                        "source_id": "HMDB",
                        "source_version": "5.0",
                        "release_version": "b7836e8c592b1f35",
                        "parsing_version": "1.1",
                        "supplementation_version": "1.0",
                        "normalization_scheme": {
                            "node_normalization_version": "2.0.10",
                            "edge_normalization_version": "v3.4.2",
                            "normalization_code_version": "1.0",
                            "conflation": true,
                            "strict": true
                        },
                        "merge_strategy": "default",
                        "normalization_version": "2.0.10_v3.4.2_1.0_conflated_strict",
                        "provenance": "infores:hmdb",
                        "description": "The Human Metabolome Database (HMDB) is an openly accessible database containing detailed information about small molecule metabolites found in the human body, with links between chemical data, clinical data, and molecular biology/biochemistry data, including protein sequences (enzymes and transporters).",
                        "source_data_url": "https://translator.ncats.io/hmdb-knowledge-beacon",
                        "license": "https://hmdb.ca/about",
                        "attribution": "https://hmdb.ca/about#cite",
                        "normalized_nodes.jsonl": {
                            "nodes": 94283
                        },
                        "normalized_edges.jsonl": {
                            "edges": 1411427
                        }
                    },
                    {
                        "source_id": "HumanGOA",
                        "source_version": "2023-05-10",
                        "release_version": "1a4bd553882c2830",
                        "parsing_version": "1.1",
                        "supplementation_version": "1.0",
                        "normalization_scheme": {
                            "node_normalization_version": "2.0.10",
                            "edge_normalization_version": "v3.4.2",
                            "normalization_code_version": "1.0",
                            "conflation": true,
                            "strict": true
                        },
                        "merge_strategy": "default",
                        "normalization_version": "2.0.10_v3.4.2_1.0_conflated_strict",
                        "provenance": "infores:goa",
                        "description": "The Gene Ontology (GO) Consortium\u2019s Human Gene Ontologies Annotations (Human GOA) resource provides open access to curated assignment of GO terms to proteins in the UniProt KnowledgeBase (UniProtKB), RNA molecules from RNACentral, and protein complexes from the Complex Portal.",
                        "source_data_url": "ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/",
                        "license": "https://www.ebi.ac.uk/about/terms-of-use/",
                        "attribution": "https://www.ebi.ac.uk/GOA/publications",
                        "normalized_nodes.jsonl": {
                            "nodes": 38391
                        },
                        "normalized_edges.jsonl": {
                            "edges": 298461
                        }
                    },
                    {
                        "source_id": "IntAct",
                        "source_version": "7_13_2022",
                        "release_version": "9c46ea6a87bf4fe5",
                        "parsing_version": "1.1",
                        "supplementation_version": "1.0",
                        "normalization_scheme": {
                            "node_normalization_version": "2.0.10",
                            "edge_normalization_version": "v3.4.2",
                            "normalization_code_version": "1.0",
                            "conflation": true,
                            "strict": true
                        },
                        "merge_strategy": "default",
                        "normalization_version": "2.0.10_v3.4.2_1.0_conflated_strict",
                        "provenance": "infores:intact",
                        "description": "The IntAct Molecular Interaction Database provides open access to molecular interactions data derived from literature curation or direct user submission.",
                        "source_data_url": "https://www.ebi.ac.uk/intact/",
                        "license": "https://www.ebi.ac.uk/about/terms-of-use/",
                        "attribution": "http://europepmc.org/article/MED/24234451",
                        "normalized_nodes.jsonl": {
                            "nodes": 91704
                        },
                        "normalized_edges.jsonl": {
                            "edges": 817101
                        }
                    },
                    {
                        "source_id": "MONDOProps",
                        "source_version": "3_23_2023",
                        "release_version": "3189fb3bbd10033d",
                        "parsing_version": "1.0",
                        "supplementation_version": "1.0",
                        "normalization_scheme": {
                            "node_normalization_version": "2.0.10",
                            "edge_normalization_version": "v3.4.2",
                            "normalization_code_version": "1.0",
                            "conflation": true,
                            "strict": true
                        },
                        "merge_strategy": "default",
                        "normalization_version": "2.0.10_v3.4.2_1.0_conflated_strict",
                        "provenance": "infores:mondo",
                        "description": "",
                        "source_data_url": "",
                        "license": "",
                        "attribution": "",
                        "normalized_nodes.jsonl": {
                            "nodes": 22465
                        },
                        "normalized_edges.jsonl": {
                            "edges": 0
                        }
                    },
                    {
                        "source_id": "PANTHER",
                        "source_version": "17.0",
                        "release_version": "9bea8e03ea6ed70b",
                        "parsing_version": "1.1",
                        "supplementation_version": "1.0",
                        "normalization_scheme": {
                            "node_normalization_version": "2.0.10",
                            "edge_normalization_version": "v3.4.2",
                            "normalization_code_version": "1.0",
                            "conflation": true,
                            "strict": true
                        },
                        "merge_strategy": "default",
                        "normalization_version": "2.0.10_v3.4.2_1.0_conflated_strict",
                        "provenance": "infores:panther",
                        "description": "The Protein ANalysis THrough Evolutionary Relationships (PANTHER) classification system provides an openly available annotation library of gene family phylogenetic trees, with persistent identifiers attached to all nodes in the trees and annotation of each protein member of the family by its family and protein class, subfamily, orthologs, paralogs, GO Phylogenetic Annotation Project function and Reactome pathways.",
                        "source_data_url": "ftp.pantherdb.org/sequence_classifications/",
                        "license": "http://pantherdb.org/tou.jsp",
                        "attribution": "http://pantherdb.org/publications.jsp#HowToCitePANTHER",
                        "normalized_nodes.jsonl": {
                            "nodes": 48902
                        },
                        "normalized_edges.jsonl": {
                            "edges": 834126
                        }
                    },
                    {
                        "source_id": "PHAROS",
                        "source_version": "v6_13_4",
                        "release_version": "2239c8bb4a3cc599",
                        "parsing_version": "1.4",
                        "supplementation_version": "1.0",
                        "normalization_scheme": {
                            "node_normalization_version": "2.0.10",
                            "edge_normalization_version": "v3.4.2",
                            "normalization_code_version": "1.0",
                            "conflation": true,
                            "strict": true
                        },
                        "merge_strategy": "default",
                        "normalization_version": "2.0.10_v3.4.2_1.0_conflated_strict",
                        "provenance": "infores:pharos",
                        "description": "Pharos is the openly accessible user interface to the Illuminating the Druggable Genome (IDG) program\u2019s Knowledge Management Center (KMC), which aims to develop a comprehensive, integrated knowledge-base for the Druggable Genome (DG) to illuminate the uncharacterized and/or poorly annotated portion of the DG, focusing on three of the most commonly drug-targeted protein families: G-protein-coupled receptors; ion channels; and kinases.",
                        "source_data_url": "https://pharos.nih.gov/",
                        "license": "Data accessed from Pharos and TCRD is publicly available from the primary sources listed above. Please respect their individual licenses regarding proper use and redistribution.",
                        "attribution": "Sheils, T., Mathias, S. et al, \"TCRD and Pharos 2021: mining the human proteome for disease biology\", Nucl. Acids Res., 2021. DOI: 10.1093/nar/gkaa993",
                        "normalized_nodes.jsonl": {
                            "nodes": 302707
                        },
                        "normalized_edges.jsonl": {
                            "edges": 562322
                        }
                    },
                    {
                        "source_id": "textminingkp",
                        "source_version": "tmkg_v1",
                        "release_version": "4049eb06b539d4d3",
                        "parsing_version": "1.0",
                        "supplementation_version": "1.0",
                        "normalization_scheme": {
                            "node_normalization_version": "2.0.10",
                            "edge_normalization_version": "v3.4.2",
                            "normalization_code_version": "1.0",
                            "conflation": true,
                            "strict": true
                        },
                        "merge_strategy": "default",
                        "normalization_version": "2.0.10_v3.4.2_1.0_conflated_strict",
                        "provenance": "infores:textminingkp",
                        "description": "The Text Mining Provider KG contains subject-predicate-object assertions derived from the application of natural language processing (NLP) algorithms to the PubMedCentral Open Access collection of publications plus additional titles and abstracts from PubMed.",
                        "source_data_url": "",
                        "license": "",
                        "attribution": "",
                        "normalized_nodes.jsonl": {
                            "nodes": 31548
                        },
                        "normalized_edges.jsonl": {
                            "edges": 1673352
                        }
                    },
                    {
                        "source_id": "STRING-DB-Human",
                        "source_version": "v11.5",
                        "release_version": "e991914c710919bd",
                        "parsing_version": "1.0",
                        "supplementation_version": "1.0",
                        "normalization_scheme": {
                            "node_normalization_version": "2.0.10",
                            "edge_normalization_version": "v3.4.2",
                            "normalization_code_version": "1.0",
                            "conflation": true,
                            "strict": true
                        },
                        "merge_strategy": "default",
                        "normalization_version": "2.0.10_v3.4.2_1.0_conflated_strict",
                        "provenance": "infores:STRING",
                        "description": "The Search Tool for the Retrieval of Interacting Genes/Proteins (STRING) database provides information on known and predicted protein-protein interactions (both direct and indirect) derived from genomic context predictions, high-throughput laboratory experiments, conserved co-expression, automated text mining, and aggregated knowledge from primary data sources.",
                        "source_data_url": "https://string-db.org",
                        "license": "All data and download files in STRING are freely available under a 'Creative Commons BY 4.0' license.",
                        "attribution": "https://string-db.org/cgi/about?footer_active_subpage=references",
                        "normalized_nodes.jsonl": {
                            "nodes": 18401
                        },
                        "normalized_edges.jsonl": {
                            "edges": 8181618
                        }
                    },
                    {
                        "source_id": "Ubergraph",
                        "source_version": "2023-05-14",
                        "release_version": "cf30898882bdf6c9",
                        "parsing_version": "1.4",
                        "supplementation_version": "1.0",
                        "normalization_scheme": {
                            "node_normalization_version": "2.0.10",
                            "edge_normalization_version": "v3.4.2",
                            "normalization_code_version": "1.0",
                            "conflation": true,
                            "strict": true
                        },
                        "merge_strategy": "default",
                        "normalization_version": "2.0.10_v3.4.2_1.0_conflated_strict",
                        "provenance": "infores:sri-ontology",
                        "description": "Ubergraph is an open-source graph database containing integrated ontologies, including GO, CHEBI, HPO, and Uberon\u2019s anatomical ontology.",
                        "source_data_url": "https://github.com/INCATools/ubergraph#downloads",
                        "license": "https://raw.githubusercontent.com/INCATools/ubergraph/master/LICENSE.txt",
                        "attribution": "https://github.com/INCATools/ubergraph",
                        "normalized_nodes.jsonl": {
                            "nodes": 2991747
                        },
                        "normalized_edges.jsonl": {
                            "edges": 3491224
                        }
                    }
                ],
                "subgraphs": [],
                "build_status": "stable",
                "build_time": "06-02-23 15:54:48",
                "build_error": null,
                "final_node_count": 3590342,
                "final_edge_count": 23198053,
                "merged_nodes": 428325,
                "merged_edges": 777,
                "qc_results": {
                    "primary_knowledge_sources": [
                        "infores:hmdb",
                        "infores:drugcentral",
                        "infores:gtopdb",
                        "infores:pdsp",
                        "infores:intact",
                        "infores:textminingkp",
                        "infores:tissues-expression-db",
                        "infores:hetionet",
                        "infores:panther",
                        "infores:sri-reference-kg",
                        "infores:diseases",
                        "infores:sri-ontology",
                        "infores:sider",
                        "infores:chembl",
                        "infores:disgenet",
                        "infores:uniprot",
                        "infores:pharos",
                        "infores:STRING",
                        "infores:ctd",
                        "infores:lincs",
                        "infores:hgnc",
                        "infores:kegg",
                        "infores:tiga",
                        "infores:faers",
                        "infores:monarchinitiative",
                        "infores:bgee",
                        "infores:eram",
                        "infores:goa"
                    ],
                    "edge_properties": [
                        "detection_method",
                        "affinity",
                        "description",
                        "sentences",
                        "hetio_source",
                        "Coexpression",
                        "Textmining_transferred",
                        "biolink:tmkp_confidence_score",
                        "FAERS_llr",
                        "affinity_parameter",
                        "Coexpression_transferred",
                        "biolink:primary_knowledge_source",
                        "Experiments_transferred",
                        "Fusion",
                        "Experiments",
                        "score",
                        "tmkp_ids",
                        "qualified_predicate",
                        "Database",
                        "Combined_score",
                        "primaryTarget",
                        "subject",
                        "Homology",
                        "object_aspect_qualifier",
                        "publications",
                        "predicate",
                        "species_context_qualifier",
                        "Cooccurance",
                        "object_direction_qualifier",
                        "object",
                        "affinityParameter",
                        "Database_transferred",
                        "Textmining",
                        "endogenous",
                        "NCBITaxon",
                        "biolink:aggregator_knowledge_source"
                    ],
                    "predicate_counts": {
                        "biolink:coexpressed_with": 6111024,
                        "biolink:actively_involved_in": 1162915,
                        "biolink:subclass_of": 3260670,
                        "biolink:physically_interacts_with": 1845518,
                        "biolink:treats": 389011,
                        "biolink:causes": 138446,
                        "biolink:affects": 1319690,
                        "biolink:interacts_with": 2103884,
                        "biolink:contributes_to": 625475,
                        "biolink:orthologous_to": 1143107,
                        "biolink:regulates": 1294454,
                        "biolink:directly_physically_interacts_with": 738462,
                        "biolink:has_part": 195202,
                        "biolink:has_participant": 537570,
                        "biolink:expressed_in": 526278,
                        "biolink:related_to": 114827,
                        "biolink:catalyzes": 260780,
                        "biolink:has_adverse_event": 172300,
                        "biolink:genetically_associated_with": 172989,
                        "biolink:correlated_with": 87348,
                        "biolink:binds": 16103,
                        "biolink:homologous_to": 206967,
                        "biolink:in_taxon": 116706,
                        "biolink:ameliorates": 33838,
                        "biolink:temporally_related_to": 24671,
                        "biolink:located_in": 230475,
                        "biolink:genetically_interacts_with": 147139,
                        "biolink:has_phenotype": 106763,
                        "biolink:develops_from": 25535,
                        "biolink:active_in": 17374,
                        "biolink:similar_to": 6999,
                        "biolink:contraindicated_for": 26502,
                        "biolink:has_output": 2934,
                        "biolink:affects_response_to": 5446,
                        "biolink:colocalizes_with": 839,
                        "biolink:overlaps": 6524,
                        "biolink:positively_correlated_with": 2215,
                        "biolink:precedes": 3882,
                        "biolink:occurs_in": 2368,
                        "biolink:decreases_response_to": 3371,
                        "biolink:increases_response_to": 2943,
                        "biolink:has_input": 3638,
                        "biolink:associated_with": 1113,
                        "biolink:coexists_with": 895,
                        "biolink:capable_of": 1049,
                        "biolink:acts_upstream_of": 335,
                        "biolink:acts_upstream_of_or_within_positive_effect": 22,
                        "biolink:produces": 89,
                        "biolink:disrupts": 175,
                        "biolink:negatively_correlated_with": 277,
                        "biolink:composed_primarily_of": 277,
                        "biolink:gene_product_of": 341,
                        "biolink:biomarker_for": 137,
                        "biolink:derives_from": 58,
                        "biolink:acts_upstream_of_or_within_negative_effect": 8,
                        "biolink:acts_upstream_of_negative_effect": 24,
                        "biolink:acts_upstream_of_positive_effect": 66,
                        "biolink:gene_associated_with_condition": 5
                    }
                },
                "neo4j_dump": "https://stars.renci.org/var/plater/bl-3.2.1/Baseline/a6d55817d19a2d8b/graph_a6d55817d19a2d8b.db.dump"
            }
        }
    ],
    "build_status": "stable",
    "build_time": "06-02-23 20:52:55",
    "build_error": null,
    "final_node_count": 5721516,
    "final_edge_count": 91341982,
    "merged_nodes": 1813590,
    "merged_edges": 0,
    "qc_results": {
        "primary_knowledge_sources": [
            "infores:disgenet",
            "infores:chembl",
            "infores:bgee",
            "infores:yeasthistones",
            "infores:intact",
            "infores:diseases",
            "infores:drugcentral",
            "infores:sider",
            "infores:STRING",
            "infores:pharos",
            "infores:ctd",
            "infores:goa",
            "infores:tiga",
            "infores:sri-ontology",
            "infores:hetionet",
            "infores:faers",
            "infores:lincs",
            "infores:pdsp",
            "infores:sgd",
            "infores:monarchinitiative",
            "infores:eram",
            "infores:hmdb",
            "infores:agrkb",
            "infores:sri-reference-kg",
            "infores:textminingkp",
            "GaschGeneExpression",
            "WeinerEpigenomics",
            "infores:hgnc",
            "infores:kegg",
            "infores:gtopdb",
            "infores:uniprot",
            "infores:tissues-expression-db",
            "infores:panther",
            "CostanzaGeneticInteractions"
        ],
        "edge_properties": [
            "Combined_score",
            "ExpressionTimeSeries",
            "evidenceCode",
            "H3K36me2TimeSeries",
            "H3K18acTimeSeries",
            "H3K36meTimeSeries",
            "H4K12acTimeSeries",
            "H4K5acTimeSeries",
            "Fusion",
            "biolink:primary_knowledge_source",
            "alleleDescription",
            "sentences",
            "H2AK5acTimeSeries",
            "NCBITaxon",
            "H2AS129phTimeSeries",
            "H3K36me3TimeSeries",
            "dataset",
            "H3K4me2TimeSeries",
            "predicate",
            "gene1_allele",
            "geneAllele",
            "object_direction_qualifier",
            "qualified_predicate",
            "species_context_qualifier",
            "HTZ1TimeSeries",
            "Cooccurance",
            "coverage",
            "mutantType",
            "H3K27acTimeSeries",
            "Textmining_transferred",
            "description",
            "Database_transferred",
            "yeastStrainBackground",
            "sgaScore",
            "H4K20meTimeSeries",
            "affinity_parameter",
            "MeanExpression",
            "H3K14acTimeSeries",
            "H3K4acTimeSeries",
            "H3K56acTimeSeries",
            "detection_method",
            "geneBiologicalRole",
            "H3K79meTimeSeries",
            "biolink:aggregator_knowledge_source",
            "score",
            "geneStoichiometry",
            "H4K16acTimeSeries",
            "H4R3me2sTimeSeries",
            "H3K23acTimeSeries",
            "Database",
            "endogenous",
            "affinity",
            "FAERS_llr",
            "H3K79me3TimeSeries",
            "Coexpression_transferred",
            "object",
            "chemicalExposure",
            "H4R3meTimeSeries",
            "H3K4meTimeSeries",
            "subject",
            "experimentType",
            "Experiments",
            "Textmining",
            "Experiments_transferred",
            "hetio_source",
            "Homology",
            "evidenceCodeText",
            "interactorType",
            "dataComment",
            "publications",
            "effectOnPhenotype",
            "tmkp_ids",
            "Coexpression",
            "H3K9acTimeSeries",
            "H3K4me3TimeSeries",
            "affinityParameter",
            "p-value",
            "annotationType",
            "experimentalCondition",
            "H3S10phTimeSeries",
            "biolink:tmkp_confidence_score",
            "H4K8acTimeSeries",
            "object_aspect_qualifier",
            "phenotypeDetails",
            "primaryTarget"
        ],
        "predicate_counts": {
            "biolink:located_in": 2039896,
            "biolink:coexpressed_with": 7331490,
            "biolink:actively_involved_in": 1190308,
            "biolink:related_to": 1828660,
            "biolink:subclass_of": 65495469,
            "biolink:physically_interacts_with": 2326224,
            "biolink:treats": 389011,
            "biolink:orthologous_to": 1633379,
            "biolink:causes": 138446,
            "biolink:affects": 1319745,
            "biolink:interacts_with": 2103884,
            "biolink:contributes_to": 626134,
            "biolink:regulates": 1294454,
            "biolink:directly_physically_interacts_with": 738462,
            "biolink:has_part": 234412,
            "biolink:has_participant": 538755,
            "biolink:expressed_in": 526278,
            "biolink:catalyzes": 260780,
            "biolink:has_adverse_event": 172300,
            "biolink:genetically_associated_with": 172989,
            "biolink:correlated_with": 87348,
            "biolink:binds": 16103,
            "biolink:homologous_to": 223355,
            "biolink:in_taxon": 116706,
            "biolink:ameliorates": 33838,
            "biolink:temporally_related_to": 24671,
            "biolink:genetically_interacts_with": 147139,
            "biolink:has_phenotype": 106763,
            "biolink:genetic_association": 76402,
            "biolink:enables": 21645,
            "biolink:develops_from": 25535,
            "biolink:negatively_correlated_with": 7771,
            "biolink:active_in": 17374,
            "biolink:similar_to": 6999,
            "biolink:contraindicated_for": 26502,
            "biolink:has_output": 2934,
            "biolink:affects_response_to": 5446,
            "biolink:in_complex_with": 2531,
            "biolink:colocalizes_with": 963,
            "biolink:overlaps": 6524,
            "biolink:positively_correlated_with": 3357,
            "biolink:precedes": 3882,
            "biolink:occurs_in": 2368,
            "biolink:decreases_response_to": 3371,
            "biolink:increases_response_to": 2943,
            "biolink:has_input": 3638,
            "biolink:acts_upstream_of_or_within": 196,
            "biolink:associated_with": 1113,
            "biolink:coexists_with": 895,
            "biolink:capable_of": 1049,
            "biolink:acts_upstream_of": 337,
            "biolink:acts_upstream_of_or_within_positive_effect": 25,
            "biolink:produces": 89,
            "biolink:disrupts": 175,
            "biolink:composed_primarily_of": 277,
            "biolink:gene_product_of": 341,
            "biolink:biomarker_for": 137,
            "biolink:derives_from": 58,
            "biolink:acts_upstream_of_or_within_negative_effect": 8,
            "biolink:acts_upstream_of_negative_effect": 25,
            "biolink:acts_upstream_of_positive_effect": 68,
            "biolink:gene_associated_with_condition": 5
        }
    },
    "neo4j_dump": "https://stars.renci.org/var/plater/bl-3.2.1/YobokopKG/bdd116c0308604f3/graph_bdd116c0308604f3.db.dump"
}