A branched amino oligosaccharide that is a pentadecasaccharide derivative consisting of a linear trisaccharide of beta-D-mannose and two N-acetyl-beta-D-glucosamine residues (one of which is at the reducing end) all linked in sequence (1->4), to the mannosyl residue of which are linked (1->3) and (1->6) two N-acetyl-alpha-neuraminyl-(2->3)-beta-D-galactosyl-(1->4)-N-acetyl-beta-D-glucosaminyl-(1->3)-beta-D-galactosyl-(1->4)-N-acetyl-beta-D-glucosaminyl-(1->2)-alpha-D-mannosyl linear hexasaccharide units.


A branched amino decasaccharide comprised of a linear hexasaccharide chain of beta-D-galactose, N-acetyl-beta-D-glucosamine, alpha-D-mannose, beta-D-mannose, and two N-acetyl-beta-D-glucosamine residues linked sequentially (1->4), (1->2), (1->3), (1->4) and (1->4), to the beta-D-mannose residue of which is (1->6)-linked an N-acetyl-alpha-neuraminyl-(2->6)-beta-D-galactosyl-(1->4)-N-acetyl-beta-D-glucosaminyl-(1->2)-alpha-D-mannosyl side-chain.


A mannotriose consisting of two beta-D-mannopyranose residues and a D-mannopyranose residue joined in sequence by (1->4) and (1->3) glycosidic bonds.


An amino tetrasaccharide consisting of four N-formyl-alpha-D-perosamine residues linked (1->2) throughout; forms the minimal structure for the A epitope of Brucella spp.


An alpha-D-Manp-(1->2)-alpha-D-Manp-(1->2)-alpha-D-Manp-(1->3)-D-Manp in which the carbon bearing the anomeric hydroxy group has beta- configuration.


A synthetic alpha-galactosylsphingamide in which the galactose ring carries a (2S,3S,4R)-3,4-dihydroxy-2-(octanoylamino)-8-oxo-8-[(3-pentylphenyl)amino]octyl moiety at O-1.


A glycoglycerolipid that consists of 3-[alpha-D-galactosyl-(1->6)-beta-D-galactosyl]-sn-glycerol in which the glycerol portion is acylated at either position 1 or position 2 by any long-chain acyl group.


An amido trisaccharide fragment which mimicks the terminus of the O-polysaccharide of Vibrio cholerae O:1, serotype Ogawa.


A trisaccharide that is D-galactopyranose in which the hydroxy groups at positions 2 and 3 have been glycosylated by beta-D-glucopyranosyl and beta-D-mannopyranosyl groups, respectively.


An amino hexasaccharide consisting of 2-acetamido-2-deoxy-alpha-D-galacturonamide, 2-acetamido-2-deoxy-alpha-D-galacturonamide, 2-acetamido-2-deoxy-beta-D-quinovose, 4-deoxy-4-formamido-beta-D-quinovose, 2-acetamido-2-deoxy-alpha-D-galacturonamide and 2-acetamido-2-deoxy-alpha-D-galacturonamide residues linked in a (1->4), (1->3), (1->2), (1->4), (1->4) sequence.


An amino trisaccharide that consists of a galactopyranose residue attached by a beta-(1->4)-linkage to an N-acetylglucosamine residue, that is in turn attached to a mannopyranose by a (1->6)-linkage.


galactaric acid derivative

A hexaric acid derivative that is formally obtained from galactaric acid.


alpha-L-galactose

A L-galactopyranose with an alpha-configuration at the anomeric center.


An oligosaccharide (hexadecasaccharide) consisting of a linear sequence of six D-arabinofuranose residues all linked alpha(1->5), to the residue distal from the reducing end are added via alpha(1->3) and alpha(1->5) linkages two linear sequences of five D-arabinofuranose residues, again all linked alpha(1->5).


A methyl glycoside that consists of methyl 3-(2-glycerylphospho)-beta-D-galactoside having an alpha-L-rhamnosyl residue at the 2-position. The core disaccharide from the Streptococcus pneumoniae type 23F capsular polysaccharide antigen functionalized with a phosphoglycerol side chain.


A beta-D-glucoside that is the 5-aminopentyl glycoside of a trisaccharide consisting of beta-D-glucosyl, beta-D-glucuronosyl and beta-D-glucosyl residues linked sequentially (1->3) and (1->4).


A branched amino trisaccharide consisting of N-acetyl-beta-D-galactosamine having beta-D-glucuronosyl and N-acetyl-beta-D-galactosaminyl residues attached at the 3- and 6-positions respectively.


A trisaccharide consisting of three beta-D-xylose units connected via (1->4)-linkages.


An amino trisaccharide comprised of alpha-neuraminic acid, beta-D-galactopyranose and D-glucopyranose residues linked sequentially (2->6) and (1->4).


A linear amino pentasaccharide comprising D-glucose at the reducing end with a beta-D-galactosyl-(1->3)-N-acetyl-beta-D-glucosaminyl-(1->3)-alpha-D-galactosyl-(1->4)-beta-D-galactosyl moiety at the 4-position.


A methyl glycoside that consists of a 4-O-(5-aminopentyl)-alpha-D-mannose residue and two N-formyl-alpha-D-perosamine residues linked sequentially (1->2) and (1->3) and linked at the reducing end glycosidically to a methyl group.


An amino disaccharide consisting of N-acetyl-D-glucosamine having an alpha-L-fucosyl residue attached at the 3-position.


A trisaccharide consisting of three beta-D-mannose units connected via (1->4) linkages.


name: Quercetin 3,4'-dimethyl ether 7-glucoside


A branched hexasaccharide consisting of a beta-D-glucose residue, two beta-D-mannose residues, an alpha-L-rhamnose residue and a beta-D-glucose residue (at the reducing end), all joined by sequential (1->3) linkages, to the mannose residue nearest to the non-reducing end is also connected an alpha-D-mannose residue via a (1->2) linkage.


A linear amino pentasaccharide comprising N-acetyl-beta-D-glucosamine at the reducing end with an N-acetyl-beta-D-glucosaminyl-(1->4)-beta-D-galactosyl-(1->4)-N-acetyl-beta-D-glucosaminyl-(1->3)-beta-D-galactosyl moiety at the 4-position.


A branched amino pentasaccharide compound consisting of a (C6H8O3)-(1->3)-[D-GalNAc-(1->2)-L-Fuc-(1->4)]-D-GlcNAc moiety attached to N-acetyl-D-galactosaminitol via a (1->3)-linkage. The unknown residue C6H8O3 is tentatively assigned by the authors of PMID:2817893 as 'an unsaturated hexosyl residue'.


A glycosylxylose derivative that is beta-D-Gal-(1->4)-beta-D-Xyl in which the anomeric hydroxy hydrogen has been replaced by a benzyl group.


xylonic acid derivative

A pentonic acid derivative that is formally obtained from xylonic acid.


L-rhamnopyranose

An L-rhamnose in cyclic pyranose form.


A branched amino tetrasaccharide consisting of N-acetyl-D-glucosamine at the reducing end having an alpha-L-fucosyl residue attached at the 3-position and an alpha-L-fucosyl-(1->2)-beta-D-galactosyl moiety attached at the 4-position.


An amino trisaccharide consisting of 2-acetamido-2-deoxy-alpha-D-galactopyranose, beta-D-galactopyranose and D-glucopyranose joined in sequence by (1->3) glycosidic bonds.


name: Okanin 4-methyl ether 4'-O-(6''-O-p-coumaroylglucoside)


An amino disaccharide consisting of N-acetylglucosamine having an N-acetylgalactosaminyl resiude attached at the 4-position via a beta-linkage.


A linear amino pentasaccharide comprising lacto-N-neotetraose having an alpha-N-acetylneuraminyl residue attached at the 6-position of the galactosyl residue at the non-reducing end.


D-rhodosamine

A trideoxyhexose deoxygenated at positions 2, 3 and 6; and carrying a 3-dimethylamino substituent.


alpha-Neup5Gc-(2->3)-beta-D-Galp-(1->4)-D-Glcp in which the anomeric configuration of the reducing-end glucose is beta.


A branched amino tetrasaccharide comprised of N-acetyl-alpha-neuraminyl, N-acetyl-beta-D-glucosaminyl and (at the reducing end) N-acetyl-beta-D-glucosamine residues all linked sequentially (1->4), with the reducing-end N-acetyl-beta-D-glucosamine residue carrying also an L-fucosyl residue via a (1->3) linkage.


name: Scutellarein 6,4'-dimethyl ether 7-(2'''-acetylrutinoside)


A disaccharide derivative that is alpha-mannobiose in which the hydroxy group at position 3 of each mannose residue has been substituted by a methyl group.


A trisaccharide derivative consisting of a beta-D-glucosyl residue glycosidically linked to a 5-aminopentyl group and which carries at O-3 a beta-D-glucosyl-(1->3)-4-O-acetyl-6-deoxy-2-O-methyl-alpha-L-talosyl disaccharide unit.


A glycosylxylose derivative that comprises the highly antigenic lipooligosaccharide, LOS-III, epitope of Mycobacterium gastri.


The 2-carboxy derivative of D-arabinitol.


aldehydo-D-lyxose

A D-lyxose in open-chain aldehyde form.


L-guloside

Any guloside in which the glycoside group is derived from L-gulose.


QUERCETIN GLUCURONIDE

A quercetin O-glycoside that consists of quercetin attached to a beta-D-glucuronopyranosyl moiety at position 3 via a glycosidic linkage. Isolated from Salvia and Phaseolus vulgaris, it exhibits antioxidant and antidepressant activities.


beta-D-sorbofuranose

A D-sorbofuranose with a beta-configuration at the anomeric center.


A glucosamine oligosaccharide comprising N-acetylglucosamine at the reducing end having an alpha-L-rhamnosyl-(1->2)-alpha-L-rhamnosyl-(1->3)-alpha-L-rhamnosyl group attached at the 3-position.


A methyl glycoside that is beta-D-Gal-(1->4)-[beta-D-Gal-(1->4)-beta-D-Glc-(1->6)]-beta-D-GlcNAc in which the hydroxy group at the reducing-end anomeric centre is methylated.


The product of desulfonating 6-O-{5-hydroxy-4-oxo-3-[2-(sulfooxy)phenyl]-4H-chromen-6-yl}-L-gulonic acid.


An amino disaccharide consisting of 6-O-methyl-beta-D-galactosamine having a 2-O-methyl-beta-D-tyvelosyl residue attached at the 3-position and with the anomeric hydroxy group replaced by methoxy.


maltotriulose

A trisaccharide consisting of two glucose residues and one fructose (at the reducing end, connected by sequential alpha-(1->4)-linkages.


A synthetic alpha-galactosylsphingamide in which the galactose ring carries a (2S,3S,4R)-3,4-dihydroxy-2-(octanoylamino)-8-oxo-8-[(6-phenylhexyl)amino]octyl moiety at O-1.


A branched amino trisaccharide consisting of D-galactose having an alpha-L-fucosyl residue at the 2-position and an N-acetyl-alpha-D-galactosaminyl residue at the 3-position.


vitexin 2''-O-beta-D-glucoside

A disaccharide derivative that is the 2''-O-glucosyl derivative of vitexin.


A hexosamine having a 3-amino-3,6-dideoxy-alpha-D-galactose structure.


A branched mannopentaose consisting of alpha-D-mannosyl-(1->2)-alpha-D-mannosyl-(1->2)-D-mannosewhere the mannosyl residue at the non-reducing end has two further alpha-D-mannosyl residues attached at positions 3 and 6 respectively.


A branched hexasaccharide consisting of alpha-D-Man at the reducing end having alpha-D-Gal-(1->2)-alpha-D-Gal-(1->6)-alpha-D-Gal and alpha-D-Man-(1->2)-alpha-D-Man groups attached at the 3- and 6-positions respectively.


A trisaccharide consisting of two beta-D-galactopyranose residues and an alpha-D-glucopyranose residue joined in sequence by (1->4) glycosidic bonds.


beta-D-glucosiduronic acid

A glucosiduronic acid resulting from the formal condensation of any substance with beta-D-glucuronic acid to form a glycosidic bond.


A 3-[beta-D-glucopyranosyl-(1->6)-beta-D-galactopyranosyl]-1,2-diacyl-sn-glycerol in which the acyl groups at O-1 and O-2 are both acetyl. A synthetic acyl homologue of the beta-glycolipid antigens (beta-GGLs) of Mycoplasma pneumoniae.


A branched amino pentasaccharide consisting of a tetrasaccharide chain of alpha-D-glucose, alpha-L-rhamnose, N-acetyl-beta-D-glucosamine and alpha-L-rhamnose residues linked sequentially (1->4), (1->3) and (1->2), to the non-reducing rhamnose residue of which is also linked (1->3) a further alpha-L-rhamnose residue. Derived from the Shigella liposaccharide O-antigen, it shows antigenic properties.


name: 2-(Pentadecanoylamino)-3-methylbutyric acid 2-deoxy-2-(butyrylamino)-alpha-D-glucopyranosyl ester


A linear amino hexasaccharide consisting of three repeats of a beta-D-glucuronosyl-(1->3)-N-propionyl-beta-D-glucosamine disaccharide unit linked (1->4).


arbutin 6-phosphate

A beta-D-glucoside compound having a phosphate group at the 6-position and a 4-hydroxyphenyl substituent at the 1-position.


A branched tetrasaccharide derivative consisting of an alpha-D-mannosyl residue glycosidically linked to a 5-aminopentyl group and which carries at O-2 an alpha-D-mannosyl-(1->2)-alpha-D-mannosyl disaccharide unit and at O-4 a beta-D-galactosyl residue.


A linear trisaccharide comprised of alpha-L-rhamnose, beta-D-glucose and alpha-D-glucose residues linked sequentially (1->3) and (1->4).


alpha-L-xylofuranose

An L-xylofuranose that has alpha- configuration at the anomeric centre.


An anthocyanin cation comprising cyanidin(1+) having a beta-D-glucopyranuronosyl-(1->2)-beta-D-glucopyranosyl residue attached at the 3-position.


paratose

A dideoxyhexose that is allose in which the hydroxy groups at positions 3 and 6 have been replaced by hydrogens.


A disaccharide derivative comprising methyl alpha-D-galactoside having an alpha-D-galactosyl residue at the 3-position.


A mannotriose that is alpha-D-mannopyranose in which the hydroxy groups at positions 2 and 4 have each been converted into the corresponding alpha-D-mannopyranoside.


A branched amino pentasaccharide consisting of an N-acetyl-alpha-D-galactosaminyl-(1->2)-beta-D-mannosyl-(1->4)-alpha-D-mannosyl-(1->5)-3-deoxy-alpha-D-manno-oct-2-ulosonic acid tetrasaccharide chain, to the alpha-D-mannosyl residue of which is also linked beta(1->2) a D-glucosyl residue. Epitope of Francisella tularensis.


talose

An aldohexose that is the C-2 epimer of galactose.


name: Okanin 3,4,3'-trimethyl ether 4'-glucoside


6-hydroxyferuloyl hexose

R=hexoside


A methyl glycoside that is beta-D-Galp-(1->4)-[alpha-L-Rhap-(1->3)]-beta-D-Glcp (RhaLac) in which the hydroxy group at the reducing-end anomeric centre is methylated.


alpha-tyvelopyranose

The alpha-anomer of the pyranose form of tyvelose.


A linear amino pentasaccharide comprising the sequence alpha-Neu5Ac, beta-D-Gal, beta-D-GlcNAc, beta-D-Gal and (at the reducing end) beta-D-Glc linked in sequence (2->3), (1->4), (1->3) and (1->4).


An amino disaccharide composed of D-galactose and 2-acetamido-2-deoxy-alpha-D-glucopyranosyl residues in (alpha-1->3) linkage.


A branched amino tetrasaccharide comprising N-acetyl-D-glucosamine at the reducing end with a N-acetyl-alpha-D-galactosaminyl-(1->3)-[alpha-L-fucosyl-(1->2)]-beta-D-galactosyl moiety attached at the 3-position.


An amino tetrasaccharide comprised of two N-acetylated glucosamine residues sulfated on O-6, of which one is at the non-reducing end, and two galactosyl residues, of which one is at the reducing end. It is an intermediate in the keratan sulfate degradation pathway.


L-rhamnofuranose

The furanose form of L-rhamnose.


octasaccharide

An oligosaccharide compound consisting of eight glycosyl residues.


C-glycosyl compound

A glycosyl compound arising formally from the elimination of water from a glycosidic hydroxy group and an H atom bound to a carbon atom, thus creating a C-C bond.


carbohydrate derivative

Any organooxygen compound derived from a carbohydrate by replacement of one or more hydroxy group(s) by an amino group, a thiol group or similar heteroatomic groups. The term also includes derivatives of these compounds.


A branched amino trisaccharide consisting of two alpha-L-rhamnose residues [linked (1->2); one at the reducing end] with a single N-acetyl beta-D-glucosaminyl residue linked (1->3) to the reducing-end rhamnose.


D-psicose

The D-enantiomer of psicose.


A tetrasaccharide comprising residues of galactose, N-acetylglucosamine, galactose and N-acetylglucosamine units in a linear sequence, all joined by beta-linkages.


An anthocyanin cation consisting of delphinidin having a rutinosyl [6-deoxy-alpha-L-mannosyl-(1->6)-beta-D-glucosyl] residue attached at the 3-hydroxy position and a beta-D-glucosyl residue at the 7-hydroxy position.


A branched amino decasaccharide comprised of a hexasaccharide chain of beta-D-galactose, N-acetyl-beta-D-glucosamine, alpha-D-mannose, beta-D-mannose, and two N-acetyl-beta-D-glucosamine residues linked sequentially (1->4), (1->2), (1->3), (1->4) and (1->4), to the beta-D-mannose residue of which is (1->6)-linked an alpha-L-fucosyl-(1->3)-[beta-D-galactosyl-(1->4)]-N-acetyl-beta-D-glucosaminyl-(1->3)-alpha-D-mannosyl tetrasaccharide branch.


An amino hexasaccharide in which an alpha-L-fucosyl residue is linked (1->2) to the mannosyl residue furthest from the reducing end of an alpha-D-GalNAc-(1->3)-beta-D-Gal-(1->4)-beta-D-GlcNAc-(1->3)-beta-D-Gal-(1->4)-beta-D-GlcNAc linear pentasaccharide.


heptasaccharide

An oligosaccharide comprising seven monomeric monosaccharide units.


A branched amino oligosaccharide that is a octadecasaccharide comprising a linear trisaccharide of beta-D-mannose and two N-acetyl-beta-D-glucosamine residues all linked in sequence (1->4), to the mannosyl residue of which are linked an N-acetyl-beta-D-glucosaminyl residue [via a (1->4) linkage], an N-acetyl-alpha-neuraminyl-(2->3)-beta-D-galactosyl-(1->4)-N-acetyl-beta-D-glucosaminyl-(1->2)-[N-acetyl-alpha-neuraminyl-(2->3)-beta-D-galactosyl-(1->4)-N-acetyl-beta-D-glucosaminyl-(1->6)]-alpha-D-mannosyl branched heptasaccharide unit [linked (1->6)], and an N-acetyl-alpha-neuraminyl-(2->3)-beta-D-galactosyl-(1->4)-N-acetyl-beta-D-glucosaminyl-(1->2)-[N-acetyl-alpha-neuraminyl-(2->3)-beta-D-galactosyl-(1->4)-N-acetyl-beta-D-glucosaminyl-(1->4)]-alpha-D-mannosyl branched heptasaccharide unit [linked (1->3)].


A trisaccharide consisting of three mannopyranose residues linked beta(1->2), of which the residue at the reducing end is dehydroxylated at C-4.


Any glycoside derived from alpha-L-fucosyl-(1->2)-beta-D-galactosyl-(1->4)-[alpha-L-fucosyl-(1->3)]-N-acetyl-beta-D-glucosaminide.


A branched amino hexasaccharide in which an alpha-L-fucosyl-(1->2)-beta-D-galactosyl-(1->3)-N-acetyl-alpha-D-galactosaminyl-(1->3)-beta-D-galactosyl-(1->4)-N-acetyl-beta-D-glucosamine linear pentasaccharide carries at the galactose residue proximal to the reducing end a second alpha-L-fucosyl residue via a (1->2) linkage.


A mannotriose that is D-mannopyranose in which the hydroxy groups at positions 2 and 4 have each been converted into the corresponding alpha-D-mannopyranose derivative.


A six-membered glucosamine oligosaccharide consisting of two repeating units of beta-D-Gal-(1->4)-[alpha-L-Fuc-(1->3)]-beta-D-GlcNAc joined by a (1->3)-linkage.


A branched amino hexasaccharide comprising a tetrasaccharide backbone consisting of N-acetyl-alpha-D-galactosamine, beta-D-galactose, N-acetyl-beta-D-glucosamine and N-acetyl-D-galactosamine residues linked in sequence (1->3), (1->4) and (1->3), with alpha-L-fucose residues linked to the beta-galactose and N-acetylglucosamine via (1->2) and (1->3) linkages respectively.


An amino nonasaccharide in which two alpha-L-fucosyl-(1->2)-[beta-D-galactosyl-(1->3)]-beta-D-galactosyl-(1->4)-N-acetyl-beta-D-glucosaminyl chains are linked (1->3) and (1->6) to D-galactose.


A synthetic alpha-galactosylsphingamide in which the galactose ring carries a (2S,3S,4R)-3,4-dihydroxy-2-(hexanoylamino)-8-(hexylamino)-8-oxo-octyl moiety at O-1.


streptobiosamine

An amino disaccharide that is a 2-deoxy-2-(methylamino)-alpha-L-glucopyranose ring joined to a L-lyxose with a formyl substituent at position 3.


Any glycoside derived from beta-D-galactosyl-(1->3)-[alpha-L-fucosyl-(1->4)]-N-acetyl-beta-D-glucosamine


A linear amino trisaccharide consisting of alpha-KDN, beta-D-galactose and N-acetyl-beta-D-glucosamine residues linked sequentially (2->3) and (1->3).


arabinonic acid derivative

A pentonic acid derivative that is formally obtained from arabinonic acid.


A branched amino trisaccharide consisting of D-galactose having an alpha-L-fucosyl residue at the 2-position and an alpha-D-galactosaminyl residue at the 3-position.


A methyl glycoside that is beta-D-galactopyranosyl-(1->4)-2-acetamido-2-deoxy-alpha-D-glucopyranose in which the anomeric hydroxy group is replaced by methoxy.


An anthocyanin cation that is cyanidin(1+) carrying a beta-D-xylosyl-(1->2)-beta-D-galactosyl substituent at position 3.


An oligosaccharide derivative that is a decasaccharide derivative, the oligosaccharide portion of the Proteus penneri strains 16 and 18 lipopolysaccharide (LPS) core region.


A branched amino tetrasaccharide consisting of the linear sequence beta-D-GalNAc-(1->4)-beta-D-Gal-(1->4)-D-Glc having a Neu5Ac residue attached to the galactose via an alpha-(2->3) linkage.


glycosylglucose derivative

A disaccharide derivative that is formally obtained from a glycosylglucose.


A linear tetrasaccharide composed of four D-mannose units, joined by alpha-linkages.


A branched trisaccharide in which the hydroxy groups at positions 3 and 4 have been converted into the corresponding alpha-D-glucopyranosyl and beta-D-glucopyranosyl derivatives, respectively.


pentopyranose

Any pentose that exists in the pyranose form.


A mannotetarose consisting of three alpha-D-mannopyranose residues and a D-mannopyranose residue joined in sequence by (1->2), (1->2) and (1->3) glycosidic bonds.


An amino oligosaccharide that is an undecasaccharide in which two tetrasaccharide branches, each formed from fucose, galactose, N-acetylglucosamine and mannose residues linked alpha(1->2), beta(1->4) and beta(1->2) respectively, are linked alpha(1->3) and alpha(1->6) to the mannose residue of a trisaccharide chain consisting of mannose and two N-acetylglucosamine residues all linked beta(1->4) with a beta-configuration of the anomeric carbon of the N-acetylglucosamine residue at the reducing end.


An amino oligosaccharide that is a heptacosasaccharide derivative consisting of a trisaccharide of beta-D-Man and two beta-D-GlcNAc residues all linked in sequence (1->4), to the Man residue of which are linked a beta-D-Gal-(1->4)-beta-D-GlcNAc-(1->3)-beta-D-Gal-(1->4)-beta-D-GlcNAc-(1->3)-beta-D-Gal-(1->4)-beta-D-GlcNAc-(1->2)-alpha-D-Man heptasaccharide group via a (1->3) linkage and a beta-D-Gal-(1->4)-beta-D-GlcNAc-(1->3)-beta-D-Gal-(1->4)-beta-D-GlcNAc-(1->3)-beta-D-Gal-(1->4)-beta-D-GlcNAc-(1->2)-[beta-D-Gal-(1->4)-beta-D-GlcNAc-(1->3)-beta-D-Gal-(1->4)-beta-D-GlcNAc-(1->3)-beta-D-Gal-(1->4)-beta-D-GlcNAc-(1->6)]-alpha-D-Man tridecasaccharide group via a (1->6) linkage, while to the beta-D-GlcNAc residue at the reducing end is linked (1->6) an alpha-L-Fuc residue.


tetrose

A four-carbon monosaccharide which in its linear form contains either an aldehyde group at position 1 (aldotetrose) or a ketone group at position 2 (ketotetrose).


beta-D-altropyranose

A D-altropyranose that has beta- configuration at the anomeric centre.


The branched decasaccharide formed when two molecules of the Shigella flexneri O-antigen core pentasaccharide alpha-L-Rha-(1->2)-alpha-L-Rha-(1->3)-[alpha-D-Glc-(1->4)]-alpha-L-Rha-(1->3)-beta-D-GlcNAc are joined end to end via beta-(1->2) linkages.


A branched amino tetrasaccharide comprising N-acetyl-beta-D-glucosamine at the reducing end with a beta-D-galactosyl group attached at the 4-position and a beta-D-galactosyl-(1->4)-beta-D-glucosyl moiety at the 6-position.


beta-L-mannofuranose

An L-mannofuranose that has beta configuration at the anomeric centre.


A galactopentaose in which the linkages between the five D-galactosyl residues are beta(1->6).


A glycolipid that consists of an alpha-D-galactosyl-(1->6)-beta-D-galactosyl residue attached at O-3 of glycerol, with either O-1 or O-2 acylated by a dodecanoyl group.


A amino trisaccharide consisting of N-acetyl-D-glucosamine having an N-acetyl-alpha-D-galactosaminyl-(1->3)-beta-D-galactosyl group attached at the 3-position.


A branched 14-residue amino oligosaccharide comprising a beta-D-mannosyl-(1->4)-N-acetyl-beta-D-glucosaminyl-(1->4)-N-acetyl-beta-D-glucosamine trisaccharide backbone, to the mannosyl residue are connected alpha-L-fucosyl-(1->2)-beta-D-galactosyl-(1->4)-N-acetyl-beta-D-glucosaminyl-(1->2)-[alpha-L-fucosyl-(1->2)-beta-D-galactosyl-(1->4)-N-acetyl-beta-D-glucosaminyl-(1->4)]-alpha-D-mannosyl and alpha-L-fucosyl-(1->2)-beta-D-galactosyl-(1->4)-N-acetyl-beta-D-glucosaminyl-(1->2)-alpha-D-mannosyl units via (1->2) and (1->6) linkages respectively.


A branched amino hexasaccharide consisting of the trisaccharide beta-D-galactosyl-(1->4)-N-acetyl-beta-D-glucosaminyl-(1->3)-beta-D-galactose where the galactosyl residue at the non-reducing end has alpha-L-fucosyl and N-acetyl-alpha-D-galactosaminylresidues attached at the 2- and 3-positions respectively and the glucosaminyl residue has an alpha-L-fucosyl attached at the 3-position.


A glucooligosaccharide consisting of five beta-D-glucosyl residues and a D-glucosyl resicuejoined in sequence by (1->6), (1->6), (1->3), (1->6), and (1->6) glycosidic bonds in which the hydroxy group at position 3 of the terminal residue (bearing the anomeric hydroxy group) has been glycosylated by a beta-D-glucosyl group.


An amino disaccharide consisting of two N-formyl-alpha-D-perosamine residues linked (1->3); forms the minimal structure for the M epitope of Brucella spp.


An octasaccharide composed of eight arabinofuranose residues in a beta(1->2), alpha(1->5), alpha(1->5), alpha(1->5), alpha(1->5), alpha(1->5) and alpha(1->5) linear sequence.


D-hexose

A hexose that has D-configuration at position 5.


A branched amino oligosaccharide that is a dodecasaccharide derivative in  which two alpha-L-fucosyl-(1->3)-[beta-D-galactosyl-(1->4)]-N-acetyl-beta-D-glucosaminyl-(1->2)-alpha-D-mannosyl tetrasaccharide units are linked (1->3) and (1->6) to the mannose residue of a beta-D-xylosyl-(1->2)-beta-D-mannosyl-(1->4)-N-acetyl-beta-D-glucosaminyl(1->4)-N-acetyl-beta-D-glucosamine tetrasaccharide.


A glycoside formed between the branched tetrasaccharide alpha-L-Fuc-(1->2)-[alpha-D-GalNAc-(1->3)]-beta-D-Gal-(1->3)-alpha-D-GalNAc and the alkenyl alcohol oct-7-en-1-ol.


A 2-deoxy-D-glucose that is D-glucopyranose in which the hydroxy group at position 2 has been replaced by a hydrogen.


A glycoside that consists of a beta-1,3-linked nonaglucan backbone with a beta-1,3-glucotetraose branch at the 6-O-position of the nonaglucan central sugar unit and with a 2-aminoethoxy moiety at the reducing-end anomeric centre.


A linear tetrasaccharide derivative consisting of a 6-O-[(2-aminoethoxy)(hydroxy)phosphoryl-alpha-D-mannose residue, two alpha-D-mannose residues and one beta-D-glucosamine residue, linked sequentially (1->2), (1->6) and (1->4), with the glucosamine residue linked glycosidically to a 6-sulfanylhexyl group.


name: 2-[(2R,5R,6S)-5-amino-6-(hydroxymethyl)-2-oxanyl]acetic acid methyl ester


A trisaccharide consisting of beta-D-glucopyranosyl, beta-D-galactopyranosyl and alpha-D-mannopyranosyl residues joined in sequence by (1->3) and (1->4) glycosidic linkages.


A branched amino trisaccharide comprised of two N-acetyl-beta-D-glucosamine residues linked (1->4) and (1->6) to N-acetyl-alpha-D-galactosamine.


A trisaccharide derivative consisting of an alpha-D-glucosyl residue glycosidically linked to a 5-aminopentyl group and which carries at O-2 a beta-D-glucosyl-(1->4)-alpha-D-glucosyl disaccharide unit.


A linear amino pentasaccharide comprising N-acetyl-alpha-D-galactosamine, N-acetyl-beta-D-galactosamine, alpha-D-galactose, beta-D-galactose and beta-D-glucose residues linked sequentially (1->3), (1->3), (1->4) and (1->4).


An amino hexasaccharide comprising beta-D-glucose, N-acetyl-beta-D-galactosamine, alpha-D-glucose, N-acetyl-beta-D-galactosamine and alpha-D-mannose residues in (1->3), (1->4), (1->4) and (1->3) sequence, to the N-acetyl-beta-D-galactosamine residue contiguous to the reducing-end mannose residue of which is also linked (1->3) a further beta-D-glucose residue.


An amino disaccharide consisting of N-acetyl-D-glucosamine having an N-acetyl-alpha-D-galactosminyl resiude attached at the 4-position.


A disaccharide derivative consisting of a beta-D-glucosyl residue glycosidically linked to a 5-aminopentyl group and which carries at O-3 a 2,4-di-O-acetyl-6-deoxy-alpha-L-talosyl residue.


A trimeric branched amino oligosaccharide consisting of three repeating units of beta-D-Gal-(1->4)-[alpha-L-Fuc-(1->3)]-beta-D-GlcNAc joined by (1->3)-linkages.


An amino trisaccharide consisting of a 2-O-methyl-L-fucosyl residue at the non-reducing end linked (1->2) to an beta-D-galactosyl residue which is in turn linked (1->3) to an N-acetyl-beta-D-galactosamine.


A branched amino pentasaccharide consisting of three alpha-L-rhamnose residues [linked sequentially (1->3) and (1->2); one at the reducing end] and two N-acetyl beta-D-glucosaminyl residues [one linked (1->3) to the reducing-end rhamnose and the other linked (1->3) to the non-reducing-end rhamnose].


A linear tetrasaccharide derivative consisting of N-acetyl-alpha-D-mannosaminyl, N-acetyl-alpha-L-fucosaminyl, N-acetyl-alpha-D-galactosaminyl and  alpha-D-galactosyl residues linked sequentially (1->3), (1->3) and (1->4), and at the reducing end linked glycosidically to a 5-aminopentyl group.


An amino trisaccharide comprising N-acetyl-beta-D-galactosaminyl, N-acetyl-beta-D-glucosaminyl and alpha-D-mannose residues linked sequentially (1->4) and (1->2).


An amino tetrasaccharide comprising residues of galactose, N-acetylglucosamine, galactose and glucose in a linear sequence, all joined by beta-linkages.


A xylotriose consisting of three D-xylose units connected via beta-(1->4)-linkages.


An amino disaccharide comprised of N-acetyl-alpha-D-galactosamine having an N-acetyl-D-galactosaminyl residue attached at the 3-position via a beta-linkage.


A trisaccharide consisting of a D-mannopyranose residue and two D-arabinofuranose residues joined in sequence by (1->5) and (1->2) glycosidic bonds. The stereochemistry of the anomeric centres of the three residues is not stated.


chromomycin

A family of antibiotics isolated from Streptomyces griseus.


A linear amino trisaccharide consisting of a beta-D-galactosyl residue linked (1->3) to an N-acetyl-D-glucosaminyl residue, which is in turn linked (1->3) to N-acetyl-D-glucosamine at the reducing end.


name: 2-[(2S,5R,6S)-5-[(2-fluorophenyl)sulfonylamino]-6-(hydroxymethyl)-2-oxanyl]acetic acid methyl ester


A linear hexasaccharide consisting of D-mannosyl residues connected by two beta- and three alpha-1,2-linkages, obtained from Candida albicans cell-wall D-mannan.


A linear hexasaccharide consisting of D-mannosyl residues connected sequentially by beta-(1->2)-, beta-(1->2)-, alpha-(1->3)-, alpha-(1->2)- and alpha-(1->2)-linkages.


phenolic glycolipid K-I

A lipooligosaccharide consisting of a phenolic phthiocerol core linked to a tetrasaccharide; it is the major phenolic glycolipid homologue isolated from M. kansasii and M. gastri.


A branched tetrasaccharide comprising D-galactose at the reducing end with an alpha-D-galactosyl-(1->3)-[alpha-L-fucosyl-(1->2)]-beta-D-galactosyl moiety attached at the 3-position.


An amino pentasaccharide comprising of beta-D-gal-(1->3)-beta-D-GlcNAc-(1->3)-beta-D-gal-(1->4)-D-glc in which the D-glc residue is substituted by an alpha-L-Fuc group at position 3. It is found in human milk.


A trisaccharide found in vegetables consisting of beta-D-fructofuranose having beta-D-fructofuranosyl and alpha-D-glucopyranosyl residues attached at the 1- and 2-positions respectively.


A branched pentasaccharide comprising a linear chain of alpha-L-fucosyl, beta-D-glucosaminyl, beta-D-galactosyl and alpha-D-glucose residues linked sequentially (1->4), (1->3) and (1->4), to the glucosaminyl residue of which is also linked (1->3) an alpha-D-galactosyl residue.


A beta-D-glucoside that is the 2-aminoethyl glycoside of a disaccharide consisting of beta-D-glucosyl and beta-D-glucuronosyl residues linked (1->4).


A linear amino tetrasaccharide consisting of N-acetyl-alpha-neuraminyl, beta-D-galactosyl, N-acetyl-beta-glucosyl and N-acetyl-beta-D-galactosamine residues linked sequentially (2->6), (1->4) and (1->6).


Any glycosyloxyflavone that consists of a flavonol attached to a beta-D-glucosyl-(1->2)-beta-D-glucosyl-(1->2)-beta-D-glucosyl residue at position 3 via a glycosidic linkage.


hexose

Any six-carbon monosaccharide which in its linear form contains either an aldehyde group at position 1 (aldohexose) or a ketone group at position 2 (ketohexose).


A branched amino oligosaccharide that is a hexacosasaccharide derivative consisting of a linear trisaccharide of beta-D-mannose and two N-acetyl-beta-D-glucosamine residues all linked in sequence (1->4), to the mannosyl residue of which are linked two beta-D-galactosyl-(1->4)-N-acetyl-beta-D-glucosaminyl-(1->3)-beta-D-galactosyl-(1->4)-N-acetyl-beta-D-glucosaminyl-(1->3)-beta-D-galactosyl-(1->4)-N-acetyl-beta-D-glucosaminyl-(1->3)-beta-D-galactosyl-(1->4)-N-acetyl-beta-D-glucosaminyl-(1->3)-beta-D-galactosyl-(1->4)-N-acetyl-beta-D-glucosaminyl-(1->2)-alpha-D-mannosyl linear undecasaccharide units [linked (1->3) and (1->6)], while to the N-acetyl-beta-D-glucosamine residue at the reducing end is linked (1->6) an alpha-L-fucose residue.


beta-L-xylofuranose

An L-xylofuranose that has beta configuration at the anomeric centre.


An amino trisaccharide consisting of alpha-L-fucopyranose, beta-D-galactopyranose and 2-acetamido-2-deoxy-D-glucopyranose residues joined in sequence by (1->6) and (1->4) glycosidic bonds.


an aldopyranose

Any aldose having undefined stereochemistry. A representative structure is provided.


ketose

Ketonic parent sugars (polyhydroxy ketones H[CH(OH)]nC(=O)[CH(OH)]mH) and their intramolecular hemiketals.


A linear amino tetrasaccharide comprising the unique bacterial sugar anthrose at the non-reducing end and three L-rhamnopyranose units joined by sequential (1->3)-, (1->3)- and (1->2)-linkages.


Any glycoside derived from beta-D-galactosyl-(1->4)-N-acetyl-beta-D-glucosaminyl-(1->3)-[N-acetyl-beta-D-glucosaminyl-(1->6)]-beta-D-galactosyl-(1->4)-N-acetyl-beta-D-glucosamine.


A branched amino oligosaccharide (undecasaccharide derivative) in which the alpha-D-mannosyl residue of a linear alpha-D-mannosyl-(1->4)-N-acetyl-beta-D-glucosaminyl-(1->4)-N-acetyl-beta-D-glucosamine sequence has linked to it (1->3) and (1->6) two branches each comprising alpha-sialyl, beta-D-galactosyl, N-acetyl-beta-D-glucosaminyl and alpha-D-mannosyl residues in a (2->6), (1->4) and (1->2) sequence.


A synthetic glycoside that consists of the branched hexasaccharide beta-D-Araf-(1->2)-alpha-D-Araf-(1->3)-[beta-D-Araf-(1->2)-alpha-D-Araf-(1->5)]-alpha-D-Araf-(1->5)-alpha-D-Araf having a 2-aminoethyl moiety at the reducing-end anomeric centre.


A branched tetrasaccharide with a structure consisting of an alpha-galactosyl-(1->3)-beta-galactosyl-(1->4)-glucose backbone, to the subterminal galactose of which is alpha(1->2)-linked a fucosyl residue.


A branched amino pentasaccharide comprising a linear tetrasaccharide chain of alpha-D-galactose, beta-D-galactose, N-acetyl-beta-D-glucosamine and N-acetyl-beta-D-galactosamine residues linked sequentially (1->3), (1->3) and (1->6), to the beta-D-galactose residue of which is also linked (1->2) an alpha-L-fucose residue.


Any eight- or nine membered amino oligosaccharide consisting of two acetamidohexose units and either six or seven hexose units.


A branched tetrasaccharide that consists of sucrose having two additional beta-fructosyl residues attached to the fructose at positions 1 and 6.


N-acetyl-D-galactosaminitol

A 2-deoxyhexitol derivative that is galactitol in which the 2-hydroxy substituent is replaced by an acetamido group.


A disaccharide derivative consisting of two alpha-L-rhamnosyl residues linked (1->3) and at the reducing end linked glycosidically to a 5-aminopentyl group.


A trisaccharide that is lactose in which the hydroxy group at position 4 of the galactose ring has been converted into its alpha-L-fucopyranosyl derivative.


A branched amino pentasaccharide comprising two galactosyl-(1->4)-N-acetylglucosaminyl units linked beta(1->3) and beta(1->6) to a D-galactose residue.


A branched amino tetrasaccharide comprising a beta-D-galactosyl-(1->4)-N-acetyl-beta-D-glucosamine disaccharide, to the galactosyl residue of which are (1->3)- and (1->6)-linked two N-acetyl-beta-D-glucosamine residues.


allose

An aldohexose that is the C-3 epimer of glucose.


beta-D-galactoside

Any D-galactoside having beta-configuration at its anomeric centre.


L-galactofuranose

The furanose form of L-galactose.


Any glycoside derived from beta-D-galactosyl-(1->3)-N-acetyl-beta-D-glucosamine


A branched 17-residue amino oligosaccharide comprising a beta-D-mannosyl-(1->4)-N-acetyl-beta-D-glucosaminyl-(1->4)-N-acetyl-beta-D-glucosamine trisaccharide backbone, to the mannosyl residue are connected alpha-L-fucosyl-(1->2)-beta-D-galactosyl-(1->4)-[alpha-L-fucosyl-(1->3)]-N-acetyl-beta-D-glucosaminyl-(1->2)-[alpha-L-fucosyl-(1->2)-beta-D-galactosyl-(1->4)-[alpha-L-fucosyl-(1->3)]-N-acetyl-beta-D-glucosaminyl-(1->4)]-alpha-D-mannosyl and alpha-L-fucosyl-(1->2)-beta-D-galactosyl-(1->4)-[alpha-L-fucosyl-(1->3)]-N-acetyl-beta-D-glucosaminyl-(1->2)-alpha-D-mannosyl units via (1->2) and (1->6) linkages respectively.


A trisaccharide that is D-galactopyranose in which the hydroxy groups at positons 3 and 4 have been converted into the corresponding beta-D-glucopyranosyl and beta-L-fucopyranosyl derivatives, respectively.


xylose

An aldopentose, found in the embryos of most edible plants and used in medicine to test for malabsorption by administration in water to the patient.


A trisaccharide consisting of three 3-deoxy-alpha-D-manno-oct-2-ulopyranonosyl units in a branched sequence.


alpha-L-Fucp-(1->2)-beta-D-Galp-(1->3)-beta-D-GlcpNAc-(1->3)-beta-D-Galp-(1->4)-D-Glcp in which the configuration at the anomeric carbon of the glucose residue is beta.


A galactotetraose composed of four beta-D-galactofuranose units joined by (1->5)-linkages.


D-lyxofuranose

The furanose form of D-lyxose.


A branched hexasaccharide derivative consisting of a linear pentasaccharide unit of beta-D-galactose, alpha-D-galactose, beta-L-rhamnose, beta-D-glucose and N-acetyl-beta-D-galactosamine residues linked sequentially (1->2), (1->3), (1->4) and (1->3), to the N-acetylgalactosamine residue of which is also linked (1->4) an alpha-L-rhamnosyl residue, the whole linked glycosidically to a 5-aminopentyl group.


An amino oligosaccharide that is a branched tetradecasaccharide derivative comprised of a mannose residue to which is linked an N-acetylgalactosaminyl residue at O-2, a glucosyl residue at O-3 and a beta-D-QuiN4Fm-(1->4)-alpha-D-GalNAcAN-(1->2)-alpha-D-GalNAcAN-(1->3)-beta-D-QuiNAc-(1->2)-beta-D-QuiN4Fm-(1->4)-alpha-D-GalNAcAN-(1->2)-alpha-D-GalNAcAN-(1->3)-beta-D-QuiNAc-(1->2)-beta-D-QuiN4Fm-(1->4)-alpha-D-GalNAcAN-(1->4)-alpha-D-GalNAcAN-(1->3)-beta-D-QuiNAc dodecasaccharide chain at O-4, all linked to an [alpha-D-Glc-(1->2)]-alpha-D-Man-(1->5)-alpha-Kdo branched trisaccharide unit.


A branched amino hexasaccharide consisting of a GlcNAc residue at the reducing end with a Man-alpha(1->6)-[Xyl-beta(1->2)]-Man-beta(1->4)-GlcNAc moiety attached via a beta-(1->4)-linkage and a Man residue attached via an alpha-(1->3)-linkage.


A pentasaccharide derivative consisting of beta-D-galactose at the reducing end linked glycosidically to a 2-aminoethyl group, while having a beta-D-glucosyl residue at the 4-position and an N-acetyl-alpha-neuraminyl-(2->3)-beta-D-galactosyl-(1->4)-N-acetyl-beta-D-glucosyl moiety at the 3-position.


cleistanthin derivative

Any glycoside that is a derivative of a cleistanthin.


A branched amino tetrasaccharide comprising N-acetyl-beta-D-galactosamine at the reducing end with an alpha-D-galactosyl-(1->3)-[alpha-L-fucosyl-(1->2)]-beta-D-galactosyl moiety attached at the 3-position.


glycosyloxyflavone

A member of the class of flavones having one or more glycosyl residues attached at unspecified positions.


A disaccharide derivative that is the 6-aminohexyl glycoside of the disaccharide alpha-L-fucopyranosyl-(1->2)-alpha-L-fucopyranose.


aldehydo-D-galactosamine

The open-chain form of D-galactosamine.


D-mannofuranose

A mannofuranose that has D configuration.


A tetrasaccharide that is lactose in which the hydroxy groups at the 2 and 2' positions have been glycosylated by alpha-L-fucosyl groups.


A linear amino pentasaccharide consisting of three galactosyl residues, one N-acetylglucosaminyl residue and one glucosyl residue (at the reducing end), linked as shown.


alpha-abequopyranose

The alpha-anomer of the pyranose form of abequose.


A branched amino ologosaccharide that is an amino undecasaccharide consisting of a linear heptasaccharide comprising N-acetyl-alpha-neuraminic acid, beta-D-galactose, N-acetyl-beta-D-galactosamine and beta-D-galactose residues, two L-glycero-alpha-D-manno-heptose (L-alpha-D-Hep) residues and a 3-deoxy-alpha-D-manno-oct-2-ulose (alpha-Kdo) residue linked in sequence (2->3), (1->3), (1->4), (1->3), (1->3) and (1->5), to the L-alpha-D-Hep residue proximal to the reducing end is also linked (1->4) a beta-D-glucose residue, while the galactose residue proximal to the reducing end also carries an N-acetyl-alpha-neuraminyl-(2->8)-N-acetyl-alpha-neuraminic acid unit via a (2->3) linkage and the alpha-Kdo residue also carries a second alpha-Kdo residue linked (2->4). One of a number of chemoenzymatically synthesised oligosaccharides composed of the inner core oligosaccharide of Campylobacter jejuni extended by various ganglioside mimics.


A glycoside that consists of a beta-1,3-linked nonaglucan backbone with a beta-1,6-glucotetraose branch at the 6-O-position of the nonaglucan central sugar unit and with a 2-aminoethoxy moiety at the reducing-end anomeric centre.


An amino tetrasaccharide comprising a 4-deoxy-4-formamido-beta-D-quinovose residue, two 2-acetamido-2-deoxy-alpha-D-galacturonamide residues and an N-acetyl-beta-D-quinovosamine residue linked in a (1->4), (1->4), (1->3) sequence.


An amino disaccharide consisting of two molecules of 2-amino-2-deoxy-beta-D-glucopyranose linked by a (1->3) glycosidic bond.


An amino disaccharide consisting of beta-D-glucopyranuronic acid having a 4-acetamido-4,6-dideoxy-2-O-methyl-alpha-L-galactopyranosyl attached at the 4-position.


mannopyranose

The pyranose form of mannose.


name: Luteolin 3'-methyl ether 7-glucuronide-4'-rhamnoside


alpha-D-Galp-(1->4)-beta-D-Galp-(1->4)-D-Glcp with beta-configuration at the reducing end anomeric centre.


A branched amino pentasaccharide comprising a linear chain of beta-D-galactose, N-acetyl-beta-D-glucosamine, beta-D-galactose and N-acetyl-beta-D-glucosamine, linked (1->3), (1->3) and (1->4) respectively, with an alpha-L-fucose residue (1->4)-linked to the N-acetyl-beta-D-glucosamine residue at the non-reducing end.


An oligosaccharide derivative that is a tetradecasaccharide derivative, the oligosaccharide portion of the Proteus penneri strains 7, 14 and 21 lipopolysaccharide (LPS) core region.


deoxy sugar

Any sugar having a hydroxy group replaced with a hydrogen atom.


A glycoside that consists of ethyl N-acetyl-beta-D-glucosaminide having an alpha-D-galactosyl-(1->4)-beta-D-galactosyl group attached at the 4-position.


A heptasaccharide composed of three mannopyranose and four arabinofuranose residues in an alpha(1->2), alpha(1->2), alpha(1->5), beta(1->2), alpha(1->5) and alpha(1->5) linear sequence.


A linear amino trisaccharide comprising N-acetyl-beta-D-glucosamine, beta-D-galactose and N-acetyl-beta-D-glucosamine residues linked sequentially (1->3) and (1->4).


An oligosaccharide derivative consisting of -D-GalNAc-ol at the reducing end with a D-GalNAc-(1->3)-D-GalNAc-(1->3)-[D-GalNAc-(1->2)-L-Fuc-(1->4)]-D-GlcNAc moiety attached via a (1->3)-linkage and a L-Fuc residue attached via a (1->6)-linkage.


A alpha-D-Manp-(1->2)-alpha-D-Manp-(1->6)-D-Manp in which the carbon bearing the anomeric hydroxy group has alpha- configuration.


A linear pentasaccharide comprising one glucose (at the reducing end) and four mannose residues joined by sequential alpha-(1->6)-, alpha-(1->2)-, alpha-(1->2)- and alpha-(1->2)-linkages.


An aminotrisaccharide consisting of two rhamnose residues and one N-acetylglucosamine residue in a linear sequence, joined via alpha-linkages.


A branched amino pentasaccharide comprising a linear sequence of alpha-D-galactose, N-acetyl-beta-D-glucosamine, beta-D-galactosamine and beta-D-glucosamine residues linked (1->3), (1->4) and (1->4), with an N-acetyl-alpha-neuraminic acid residue linked (2->6) to the N-acetyl-beta-D-glucosamine residue.


name: 6-Hydroxykaempferol 3,5,7,4'-tetramethyl ether 6-rhamnoside


A linear amino trisaccharide consisting of beta-D-glucose at the reducing end having an N-acetyl-beta-D-glucosaminyl-(1->3)-beta-D-galactosyl group attached at the 4-position.


A nine-membered branched glucosamine oligosaccharide consisting of eight D-mannosyl residues and one N-acetylglucosamine residue (the latter being located at the reducing end). An intermediate glycan structure of glycosylated proteins.


An amino pentasaccharide antigen consisting of three 3-deoxy-D-manno-oct-2-ulose residues and two glucosamine residues (one at the reducing end) in a linear sequence, with two phosphate groups attached.


A branched oligosacharide consisting of a tetrasaccharide chain of  deamino-alpha-neuraminyl (KDN), beta-D-galactosyl, N-acetyl-alpha-D-galactosaminyl and N-acetyl-D-galactosamine residues linked sequentially (2->3), (1->3) and (1->3), to the reducing-end N-acetyl-D-galactosamine residue of which is also linked (2->6) a single KDN or a (2->8)-linked chain of KDN residues, the number of KDN residues in the chain ranging between 1 and 9, with an average of 3. The diagram shows the structure with 3 KDN residues in the side-chain.


N-glycoloyl-hexosamine

A N-acyl-hexosamine in which the acyl group specified is glycoloyl.


A branched synthetic pentasaccharide derivative consisting of a chain of alpha-L-fucose, beta-D-galactose, N-acetyl-beta-D-glucosamine and beta-D-glucose residues linked in sequence (1->2), (1->4), (1->3), to the N-acetyl-beta-D-glucosamine is also linked (1->3) another alpha-L-fucose residue. An aminopropyl linker at the reducing end enables printing onto microscope slides. One of a series of substructures of the Helicobacter pylori O6 O-antigen tridecasaccharide O-antigen used for its immunological evaluation.


A branched amino oligosaccharide that is a pentadecasaccharide comprising a linear trisaccharide of beta-D-mannose and two N-acetyl-beta-D-glucosamine residues all linked in sequence (1->4), to the mannosyl residue of which are linked an N-acetyl-beta-D-glucosaminyl residue [via a (1->4) linkage], an N-acetyl-alpha-neuraminyl-(2->3)-beta-D-galactosyl-(1->4)-N-acetyl-beta-D-glucosaminyl-(1->2)-[N-acetyl-alpha-neuraminyl-(2->3)-beta-D-galactosyl-(1->4)-N-acetyl-beta-D-glucosaminyl-(1->6)]-alpha-D-mannosyl branched heptasaccharide unit [linked (1->6)], and an N-acetyl-alpha-neuraminyl-(2->3)-beta-D-galactosyl-(1->4)-N-acetyl-beta-D-glucosaminyl-(1->2)-alpha-D-mannosyl linear tetrasaccharide unit [linked (1->3)].


alpha-D-glucosiduronic acid

A glucosiduronic acid in which the glucuronic moiety has alpha-D stereochemistry.


montbretin A

A glycosyloxyflavone that is myricetin in which the hydroxy groups at the 3 and 4' positions have been glycosylated by an alpha-L-rhamnopyranosyl-(1->2)-6-O-[(2E)-3-(3,4-dihydroxyphenyl)prop-2-enoyl]-beta-D-glucopyranosyl-(1->2)-alpha-L-rhamnopyranosyl group and a 4-O-(alpha-L-rhamnopyranosyl)-beta-D-xylopyranose group, respectively.


A branched amino pentasaccharide comprising a linear chain of beta-D-galactose, N-acetyl-beta-D-glucosamine, beta-D-galactose and N-acetyl-beta-D-glucosamine, linked (1->3), (1->3) and (1->4) respectively, with an alpha-L-fucose residue linked to the reducing-end N-acetyl-beta-D-glucosamine residue.


A branched amino decasaccharide consisting of a beta-D-GlcNAc residue at the reducing end with a beta-D-Gal-(1->4)-beta-D-GlcNAc-(1->2)-alpha-D-Man-(1->3)-[beta-D-Gal-(1->4)-beta-D-GlcNAc-(1->2)-alpha-D-Man-(1->6)]-[beta-D-Xyl-(1->2)]-beta-D-Man-(1->4)-beta-D-GlcNAc moiety attached via a beta-(1->4)-linkage.


glucitol derivative

A hexitol derivative that is formally obtained from a glucitol.


quercetin O-glycoside

Any glycosyloxyflavone that is an O-glycosylated derivative of quercetin.


hexaric acid derivative

An aldaric acid derivative that is formally obtained from a hexaric acid.


A branched trisaccharide consisting of one D-glucose and two L-glycero-alpha-D-manno-heptopyranose residues (one at the reducing end), linked as shown.


A trisaccharide that is beta-D-galactopyranose in which the hydroxy groups at positions 2 and 4 have been converted to the corresponding beta-D-galactopyranoside and beta-D-glucopyranoside, respectively.


An amino oligosaccharide that is a tridecasaccharide derivative in which two pentasaccharide branches, each formed from N-acetyl-alpha-D-galactosaminyl-(1->3)-[alpha-L-fucosyl-(1->2)]-beta-D-galactosyl-(1->3)-N-acetyl-beta-D-glucosaminyl-(1->2)-alpha-D-mannose, are linked (1->3) and (1->6) to the mannose residue of a trisaccharide chain consisting of mannose and two N-acetylglucosamine residues all linked beta(1->4) with a beta-configuration of the anomeric carbon of the N-acetylglucosamine residue at the reducing end.


A branched amino tetrasaccharide consisting of alpha-KDN, beta-D-galactose and N-acetyl-D-glucosamine residues linked sequentially (2->3) and (1->4), with an alpha-L-fucose residue linked (1->3) to the N-acetyl-D-glucosamine at the reducing end.


An oligosaccharide derivative that is a branched octasaccharide derivative consisting of two galactose residues, three glucose residues, one N-acetylglucosamine residue and three L-glycero-alpha-D-manno-heptose residues, one of which is at the reducing end. The unit constitutes one of the core oligosaccharide structures of enterobacterial lipopolysaccharide obtained from Salmonella species.


cyanidin 3-O-beta-D-sambubioside

An anthocyanidin 3-O-beta-D-sambubioside having cyanidin as the anthocyanidin component.


A methylpseudouridine in which the methyl group is located at position N-1 on the uracil ring.


A branched amino heptasaccharide consisting of three repeating units of beta-D-Gal-(1->4)-[alpha-L-Fuc-(1->3)]-beta-D-GlcNAc joined by (1->3)-linkages with an alpha-L-fucosyl residue attached at the 2-position of the galactose residue at the non-reducing end.


A methyl glycoside that is alpha-L-Fucp-(1->3)-[beta-D-Galp-(1->4)]-beta-D-Glcp (LacLe(x)) in which the hydroxy group at the reducing-end anomeric centre is methylated.


A carbohydrate acid derivative that consists of D-glucuronic acid having an N-acetyl-alpha-D-glucosaminyl residue attached at position 4. An intermediate glycan in the degradation of heparan sulfate.


A branched mannopentaose comprised of a linear tetrasaccharide unit of D-mannose residues linked sequentially alpha(1->2), alpha(1->6) and alpha(1->6), to the residue at the reducing end is also linked alpha(1->2) a fifth D-mannose residue.


A mannotriose consisting of an alpha-D-mannopyranose residue and two beta-D-mannopyranose residues joined in sequence by (1->3) and (1->4) glycosidic bonds.


A trisaccharide consisting of beta-D-galctopyranose, beta-D-glucopyranose and D-galactopyranose residues joined in sequence by (1->2) and (1->4) glycosidic bonds.


An alpha-D-GalpNAc-(1->4)-D-GlcpNAc in which the reducing end anomeric centre has beta-configuration.


A dimeric branched amino tetrasaccharide consisting of beta-D-glucuronosyl-(1->3)-N-acetyl-beta-D-galactosamine having a further beta-D-glucuronosyl-(1->3)-N-acetyl-beta-D-galactosaminyl moiety attached at the 6-position of the galactosamine.


A branched amino tetrasaccharide that consists of the linear trisaccharide alpha-L-fucosyl-(1->3)-N-acetyl-beta-D-galactosaminyl-(1->4)-N-acetyl-D-glucosamine in which an alpha-L-fucosyl residue is attached at position 3 of the glucoamine.


6-hydroxyconiferyl alcohol hexoside

R1=hexoside,R2=H,R3=H; R1=H,R2=hexoside,R3=H; R1=H,R2=H,R3=hexoside


D-threose

The D-stereoisomer of threose.


An amino nonasaccharide that consists of the disaccharide beta-D-GlcpNAc-(1->4)-D-GlcpNAc having a branched heptamannosyl moiety attached at position 4.


A tetrasaccharide consisting of alpha-D-abequose, alpha-D-mannose, alpha-L-rhamnose and alpha-D-galactose residues linked sequentially (1->3), (1->4) and (1->3); epitope of the O-antigen polysaccharide in Salmonella.


A beta-D-glucoside that is the 4,4'-bis(beta-D-glucosyl) derivative of (-)-syringaresinol.


A trisaccharide that is lactose in which the hydroxy group at position 6 of the galactosyl ring has been glycosylated by a beta-D-galactopyranosyl group.


name: 8-Hydroxyluteolin 4'-methyl ether 8-glucoside


beta-L-rhamnopyranose

The beta-anomer of L-rhamnopyranose.


A linear trisaccharide comprising two L-glycero-alpha-D-manno-heptose residues and a 3-deoxy-alpha-D-manno-oct-2-ulosonic acid (2-keto-3-deoxy-alpha-D-mannooctanoic acid, alpha-Kdo) residue in a (1->3), (1->5) sequence.


An amino trisaccharide that consists of a galactose residue attached by a beta-(1->3)-linkage to an N-acetylglucosamine residue, that is in turn attached to a second galactose by a beta-(1->6)-linkage.


An oligosaccharide derivative that is a tridecasaccharide derivative, the oligosaccharide portion of the Proteus penneri strain 103 lipopolysaccharide (LPS) core region.


A linear amino pentasaccharide comprising one fucose, two galactose and two glucosamine residues, one of which is at the reducing end.


A glycoside formed between the branched tetrasaccharide alpha-L-Fuc-(1->2)-[alpha-D-Gal-(1->3)]-beta-D-Gal-(1->3)-beta-D-Gal and the alkenyl alcohol oct-7-en-1-ol.


An amino disaccharide comprising a beta-D-mannosyl residue linked (1->4) to an N-acetyl-D-glucosamine residue at the reducing end.


beta-D-Galp-(1->3)-[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)]-D-GalpNAc with beta-configuration at the anomeric centre of the reducing-end GalNAc residue.


D-glucosamine

An amino sugar whose structure comprises D-glucose having an amino substituent at position 2.


An amino disaccharide consisting of N-acetyl-beta-D-glucosamine having an alpha-L-rhamnosyl residue attached at the 3-position.


An amino disaccharide epitope consisting of two N-formyl-alpha-D-perosamine residues linked (1->2). Its coupling with the carrier protein CRM197 via the DAS linker results in a neoglycoconjugate which has been used in investigations into vaccine development against brucellosis.


A branched aminopentasaccharide comprising beta-D-glucose at the reducing end with a beta-D-galactosyl-(1->4)-[beta-D-glucosyl-(1->6)]-N-acetyl-beta-D-glucosaminyl-(1->3)-beta-D-galactosyl moiety at the 4-position.


amino trisaccharide

An amino oligosaccharide that is a trisaccharide having one or more substituted or unsubstituted amino groups in place of hydroxy groups at unspecified positions.


A galactotetraose comprised of four D-galactose residues connected sequentially by alpha(1->3), beta(1->4) and alpha(1->3) linkages.


A branched glycoside consiting of propyl alpha-L-rhamnoside having alpha-L-rhamnosyl and N-acetyl-beta-D-glucosaminyl residues at the 2- and 2-positions respectively.


N-acetyllactosamine

A beta-D-galactopyranosyl-(1->4)-N-acetyl-D-glucosamine having beta-configuration at the reducing end anomeric centre.


A branched oligosaccharide comprising eleven D-arabinofuranose units, in an assembly consisting of two of the arabinose residues linked alpha(1->5), with beta-arabinosyl-(1->2)-alpha-arabinosyl and beta-arabinosyl-(1->2)-alpha-arabinosyl-(1->5)-alpha-arabinosyl-(1->5)-alpha-arabinosyl-(1->5)-alpha-arabinosyl-(1->5)-alpha-arabinosyl-(1->5)-alpha-arabinosyl units linked to respectively the 3- and 5-positions of the arabinose residue distal from the reducing-end residue.


heptose

A seven-carbon monosaccharide which in its linear form contains either an aldehyde group at position 1 (aldoheptose) or a ketone group at position 2 (ketoheptose).


A linear trisaccharide consisting of three D-mannose units joined by alpha-(1->2)-linkages


DERIVATIVE 4


(3R, 6R)-Pleostene

Sesquiterpene from Lepista nuda


ovothiol B zwitterion

An L-alpha-amino acid zwitterion formed from ovothiol B by transfer of a proton from the carboxy to the amino group; major species at pH 7.3.


An O-(S-acylpantetheine-4'-phosphoryl)serine(1-) residue in which the S-acyl group is specified as 4,5-dichloropyrrole-2-carbonyl.


N(pros)-phospho-L-histidine residue

An alpha-amino-acid residue derived from substitution of a phospho group on the pros N atom of an L-histidine residue.


A 2-amino-Delta(2)-thiazoline-4-carboxylic acid zwitterion that has R-configuration. The major species at pH 7.3.


An O-(S-3-oxoacylpantetheine-4'-phosphoryl)-L-serine(1-) residue in which the S-acyl group is specified as (19Z,31Z)-3-oxopentacontadienoyl.


An L-alpha-amino acid residue derived from O(3)-{N-acetyl-beta-D-glucosaminyl-(1->2)-[N-acetyl-beta-D-glucosaminyl-(1->6)]-alpha-D-mannosyl}-L-threonine.


The stable isotope of molybdenum with relative atomic mass 94.905842, 15.9 atom percent natural abundance and nuclear spin 5/2.


O-decanoyl-L-serine residue

An L-alpha-amino-acid residue that is an L-serine residue in which the alcoholic hydroxy group has been acylated with a decanoyl group.


Conjugate base of bkas#16


phenoxy radical

An organic radical generated from phenol.


organocadmium compound

A compound containing at least one carbon-cadmium bond.


citrate-coated silver nanoparticle

Any coated Ag nanoparticle in which the the silver nanoparticles are encapsulated by citrate.


coated silver nanoparticle

Any silver nanoparticle that is specially coated to produce tailored nanoparticles for specific applications.


silver nanoparticle

A nanoparticle consisting of silver atoms.


silver ion

A silver atom having a net electric charge.


An organic anionic group obtained by deprotonation of the carboxy and phosphate OH groups of S-[5-carboxy-1-(5-O-phosphono-beta-D-ribofuranosyl)pyridinium-3-carbonyl]-L-cysteine residue


olefinic compound

Any organic molecular entity that contains at least one C=C bond.


name: acetic acid [4-[2-(3,5-diacetyloxyphenyl)ethenyl]phenyl] ester


name: 5-[3-(3-chlorophenyl)-1-oxoprop-2-enyl]-2,4-dimethyl-1H-pyrrole-3-carboxylic acid methyl ester


A stilbenoid with a structure of (E)-stilbene substituted at one of the C-4 positions by a nitro group.


name: 2-naphthalenesulfonic acid propanoic acid [4-(dimethylamino)-3-methyl-1,2-diphenylbutan-2-yl] ester


name: 5-[3-(2-chlorophenyl)-1-oxoprop-2-enyl]-2,4-dimethyl-1H-pyrrole-3-carboxylic acid methyl ester


name: 5-[3-(2-fluorophenyl)-1-oxoprop-2-enyl]-2,4-dimethyl-1H-pyrrole-3-carboxylic acid methyl ester


name: acetic acid [2-[2-(1-oxo-3-phenylprop-2-enyl)-3-phenyl-3,4-dihydropyrazol-5-yl]phenyl] ester


name: 3-(2-methoxyphenyl)-2-phenyl-2-propenoic acid [2-(2,5-dimethylanilino)-2-oxoethyl] ester


A member of the class of cyclopropanes that is 1-methylidenecyclopropane carrying an additional pent-4-en-1-yl substituent at position 2.


enyne

An  acetylenic and an olefinic  compound containing a carbon chain that contains a carbon-carbon double bond and a carbon-carbon triple bond.


stilbenoid

Any olefinic compound characterised by a 1,2-diphenylethylene backbone.


name: Methoxy hydroxy stilbene carboxylic acid


alpha-cembratrien-ol

A diterpene


3'-(L-phenylalanyl)adenylyl(1-) group

An organic anionic group obtained by deprotonation of the phosphate group of 3'-(L-phenylalanyl)adenylyl group. It is the major structure at pH 7.3 (according to Marvin v 6.2.0.).


Compound 5 in ref.


Met-Ala zwitterion

A peptide zwitterion obtained by transfer of a proton from the carboxy to the amino terminus of Met-Ala.


Zwitterionic form of S-(5-deoxy-D-ribos-5-yl)-L-homocysteine arising from transfer of a proton from the carboxy to the amino group; major species at pH 7.3.


An anionic amino-acid residue formed by loss of a proton from the phospho group  of hexadec-2-enoyl-pantetheine-4-phosphorylserine residue.


peltogynoid

Peltogynoid compounds, differing from other flavonoids by the presence of a fourth ring, have been isolated from a small group of species, however, their biological activities remain to be defined.


A nucleotide residue derived from 2-methylthio-N(6)-dimethylallyladenine 5'-monophosphate with linkages at the 3'- and 5'-positions.


An aromatic amino-acid zwitterion arising from deprotonation of the carboxy and 3-hydroxy groups asell as protonation of the amino group of the cationic 3-(3,4-dihydroxypyridinium-1-yl)-L-alanine; major microspecies at pH 7.3 (according to Marvin v 6.2.0.).


name: 5'-end (N(2),N(2),N(7)-trimethyl 5'-triphosphoguanosine)-adenosine(2-) residue

description: A N(2),N(2),N(7)-trimethyl guanosine linked via an inverted 5'-5' triphosphate bridge to an initiating adenosine; major species at pH 7.3.


name: 5'-end (N(2),N(2),N(7)-trimethyl 5'-triphosphoguanosine)-purine ribonucleoside(2-) residue

description: A N(2),N(2),N(7)-trimethyl guanosine linked via an inverted 5'-5' triphosphate bridge to an initiating purine ribonucleoside; major species at pH 7.3.


name: 5'-end (N(2),N(2),N(7)-trimethyl 5'-triphosphoguanosine)-guanosine(2-) residue

description: A N(2),N(2),N(7)-trimethyl guanosine linked via an inverted 5'-5' triphosphate bridge to an initiating guanosine; major species at pH 7.3.


A peptide cation that is the conjugate acid of argipressin, arising from the protonation of the N-terminal amino group and the guanidino group; major species at pH 7.3.


L-vinylglycine zwitterion

An L-alpha-amino acid zwitterion obtained by transfer of a proton from the carboxy to the amino group of L-vinylglycine; major species at pH 7.3.


vinyl carbene

Carbenes having a vinylic group on a carbenic carbon atom, RR'C=CR''-C(2.)-R'''.


CoA ester of bkos#34


phenylpropanoid

Any organic aromatic compound with a structure based on a phenylpropane skeleton. The class includes naturally occurring phenylpropanoid esters, flavonoids, anthocyanins, coumarins and many small phenolic molecules as well as their semi-synthetic and synthetic analogues. Phenylpropanoids are also precursors of lignin.


A phenylpropanoid consisting of eugenol having a methyl substituent at the 3-position.


norlignan

Any member of the group of plant secondary metabolites with a diphenylpentane skeleton.


syringal lignin

Lignin composed principally of trans-sinapyl alcohol (syringyl) units.


lignan

Any phenylpropanoid  derived from phenylalanine via dimerization of substituted cinnamic alcohols, known as monolignols, to a dibenzylbutane skeleton. Note that while individual members of the class have names ending ...lignane, ...lignene, ...lignadiene, etc., the class names lignan, neolignan, etc., do not end with an "e".


p-hydroxyphenyl lignin

Lignin composed principally of trans-p-coumaryl alcohol units.


An isoeugenol derivative carrying a 5-methyl substituent.


An isoeugenol derivative carrying a 3-methyl substituent.


hydroxysugiresinol

A norlignan that is a derivative of sugiresinol in which the aromatic ring B has an additional hydroxy substituent.


name: 6bS, 7R, 8S)-7-methoxy-4, 8, 9-trihydroxy-1, 6b, 7, 8-tetrahydro-2H-benzo[j]fluoranthen-3-one


A derivative of isoeugenol with three methyl substituents at position 9.


SEQUIRIN C

A norlignan that is a derivative of agatharesinol in which  the aromatic ring B has an additional hydroxy substituent ortho to the one present in the parent compound.


guaiacyl lignin

Lignin composed principally of coniferol (guaiacyl) units.


An isoeugenol derivative carrying a 6-methyl substituent.


sugiresinol

A norlignan that is an isomer of agatharesinol in which the dihydroxypentene side chain is cyclised.


A phenylpropanoid consisting of eugenol having a methyl substituent at the 5-position.


lignin

A polyphenylpropanoid derived from three monolignol monomers: trans-p-coumaryl alcohol, coniferol and trans-sinapyl alcohol. There is extensive cross-linking and no defined primary structure.


An analogue of isoeugenol in which an isopropoxy group replaces the methoxy group.


neolignan

A phenylpropanoid that includes plant products formed primarily from oxidative coupling of two para-propylphenol moities. Unlike lignan, the units are coupled at  positions other than their beta-carbon atoms.


imidazolium ion

The cation resulting from protonation or quaternisation at the 3-position of any 1H-imidazole.


A 1-alkyl-3-methylimidazolium in which the alkyl substituent at C-1 is ethyl.


An imidazolium ion resulting from the protonation of the dihydro imidazole ring of tetryzoline.


An imidazolium ion obtained by methylation at position 3 of 1-methyl-2-[(2-oxopropyl)thio]imidazole.


A 1-alkyl-3-methylimidazolium in which the alkyl substituent at C-1 is decyl.


imidazolium cation

An imidazolium ion that is the cation resulting from protonation at the 3-position of 1H-imidazole.


A 1-alkyl-3-methylimidazolium in which the alkyl substituent at C-1 is butyl.


An imidazolium ion resulting from the protonation of the imidazole ring of oxiconazole.


5-aminoimidazol-3-ium ribonucleoside

An imidazolium ion resulting from the protonation of the 3-position of the imidazole moiety of 5-aminoimidazole ribonucleoside. The major species at pH 7.3.


A 1-alkyl-3-methylimidazolium in which the alkyl substituent at C-1 is dodecyl.


A 1-alkyl-3-methylimidazolium in which the alkyl substituent at C-1 is methyl.


2-chloroimidazolium ion

An imidazolium ion having a chloro substituent at the 2-position.


CALMIDAZOLIUM

An  imidazolium ion that is imidazolium cation substituted by a bis(4-chlorophenyl)methyl group at position 1 and a 2-[(2,4-dichlorobenzyl)oxy]-2-(2,4-dichlorophenyl)ethyl group at position 3. It acts as an antagonist of calmodulin, a calcium binding messenger protein.


An imidazolium ion with an alkyl substituent at the 1-position and a methyl substituent at the 3-position.


Conjugate base of ascr#27


A divalent metal cation in which the metal is manganese.


manganese dihydroxide

A manganese hydroxide in which the manganese atom is bound to two hydroxide groups.


Category:Glycerolipids - Main Class:Glycosylmonoradylglycerols - Subclass:Glycosylmonoacylglycerols (Digalactosylmonoacylgylcerols) - Abbreviation:DGMG


3-hydroxy-L-asparagine residue

An L-asparagine residue that is substituted by an hydroxy group at position.


(3R)-3-hydroxy-L-asparagine residue

An L-asparagine residue that is substituted by an hydroxy group at position 3 (the 3R stereoisomer).


(3S)-3-hydroxy-L-asparagine residue

An L-alpha-amino acid residue derived from (3S)-3-hydroxy-L-asparagine.


secondary lysosome

category: biolink:CellularComponent biolink:AnatomicalEntity biolink:PhysicalEssence biolink:OrganismalEntity biolink:SubjectOfInvestigation biolink:BiologicalEntity biolink:ThingWithTaxon biolink:NamedThing biolink:PhysicalEssenceOrOccurrent

description: Vacuole formed by the fusion of a lysosome with an organelle (autosome) or with a primary phagosome.


anticoagulant rodenticide

A rodenticide which contains one or more active ingredients and when consumed by rodents results in the inability to produce essential blood-clotting factors.


uridylyl-L-tyrosine(1-) residue

An alpha-amino-acid residue anion obtained by deprotonation of the phosphate OH group of uridylyl-L-tyrosine residue; major species at pH 7.3.


An O-[S-(3R)-3-hydroxyacylpantetheine-4'-phosphoryl]serine(1-) residue in which the S-acyl group is specified as (3R,17Z,33Z)-3-hydroxydopentacontadienoyl.


inclusion compound

A complex in which one component (the host) forms a cavity or, in the case of a crystal, a crystal lattice containing spaces in the shape of long tunnels or channels in which molecular entities of a second chemical species (the guest) are located. There is no covalent bonding between guest and host, the attraction being generally due to van der Waals forces.


clathrate compound

Inclusion compound in which the guest molecule is in a cage formed by the host molecule or by a lattice of host molecules.


methane clathrate

A clathrate compound that is an ice-like solid that consists of methane which is trapped within the crystal structure of water. It has formula CH4.5.75H2O or 4CH4.23H2O.


gold monochloride

A gold salt in which the counterion is chloride


An organic cation resulting from the protonation of the carbonilide moiety of alstonine. The major microspecies at pH 7.3.


4-chloro-L-threonine residue

An L-alpha-amino-acid residue derived from 4-chloro-L-threonine.


azidoglyburide

derivative of glyburide (CHEBI:5441), also known as azidoglibenclamide


An organic anionic group obtained by deprotonation of the phosphate OH groups of (5R)-5,6-dihydro-5-(thymidin-7-yl)thymidine dimer residue; major microspecies at pH 7.3


5'-end phospho-guanosine(2-) residue

An organic anionic group obtained by deprotonation of the phosphate OH groups of a 5'-end phospho-guanosine residue; major species at pH 7.3.


An alkyl,acyl-sn-glycero-3-phosphoethanolamine zwitterion in which the alkyl or acyl groups at positions 1 and 2 contain a total of 44 carbons and 5 double bonds.


An O-(S-3-oxoacylpantetheine-4'-phosphoryl)-L-serine(1-) residue in which the S-acyl group is specified as (19Z)-3-oxooctatriacontenoyl.


N(5)-acetylornithine zwitterion

An amino acid zwitterion obtained by transfer of a proton from the carboxy to the amino group of N(5)-acetylornithine; major species at pH 7.3.


A collagen cross-link formed by spontaneous reaction of a dehydro-hydroxylysino-norleucine cross-link (deH-HLNL; CHEBI:64732) with a histidine residue.


collagen cross-link

A group that links two or more collagen chains to one another.


lysyl-pyridinoline cross-link

A collagen cross-link formed from two hydroxylysine residues and a helical lysine residue.


hydroxylysyl-pyrrole cross-link

A collagen cross-link postulated to be formed from the reaction of a telopeptidyl lysine-aldehyde and the immature cross-link hydroxylysino-5-ketonorleucine (HLKNL, CHEBI:64749).


A collagen cross-link having an aldimine-type structure, formed by condensation of a telopeptide lysine-aldehyde with a helical hydroxylysine residue.


hydroxylysyl-pyridinoline cross-link

A collagen cross-link formed from two hydroxylysyl-aldehyde residues and a helical hydroxylysine residue.


A collagen cross-link having an keto-imine-type structure, formed by condensation of a telopeptide hydroxylysine-aldehyde with the epsilon-amino group of a helical hydroxylysine residue and a subsequent spontaneous Amadori rearrangement of the resulting Schiff base.


S-hydroxylysino-methionine cross-link

A collagen cross-link formed between hydroxylysine and methionine residues involving a sulfilimine (-S=N-) bond. It has been identified as linking hydroxylysine-211 and methioine-93 of adjoining protomers in a collagen IV network.


TMP778 is a potent and selective RORgt inverse agonist.


Conjugate base of ascr#18-CoA


A tertiary ammonium ion resulting from the protonation of the tertiary amino group of noribogaine.


tertiary ammonium ion

An organic cation obtained by protonation of the amino group of any tertiary amino compound.


A tertiary ammonium ion resulting from the protonation of the tertiary amino group of ibogamine. It is the major microspecies at pH 7.3.


A tertiary ammonium ion that is conjugate acid of gepirone resulting from the protonation of the piperazine nitrogen; Major species at pH 7.3.


A tertiary ammonium ion resulting from the protonation of the tertiary amino group of 10-hydroxycoronaridine. The major species at pH 7.3.


A tertiary ammonium ion that is the conjugate acid of givinostat resulting from the protonation of the tertiary amino group; Major species at pH 7.3.


A tertiary ammonium ion that is the conjugate acid of chlorprothixene resulting from the protonation of the tertiary amino group; major species at pH 7.3.


A tertiary ammonium ion resulting from the protonation of the tertiary amino group of ibogaine.


psilocinium

Conjugate acid of psilocin; major microspecies at pH 7.3.


A tertiary ammonium ion that is the conjugate acid of naxagolide arising from the protonation of the tertiary amino group. Major microspecies at pH 7.3.


A tertiary ammonium ion resulting from the protonation of the tertiary amino group of solanidine. Major microspecies at pH 7.3.


A quinolinium ion obtained by protonation of the quinoline nitrogen and tertiary amino group of the antimalarial drug hydroxychloroquine. It is the major species at pH 7.3.


A tertiary ammonium ion that is the conjugate acid of zavegepant resulting from the protonation of the piperidine nitrogen; Major species at pH 7.3.


A tertiary ammonium ion that is the conjugate acid of dilazep resulting from the protonation of the two amino groups of the diazepane moiety.


A tertiary ammonium ion that is the conjugate acid of 1-formylpyrrolizidine resulting from the protonation of the amino group; Major species at pH 7.3.


A  tertiary ammonium ion obtained by protonation of the two tertiary amino groups of cis-flupenthixol.


A quinolinium ion obtained by protonation of the quinoline nitrogen and tertiary amino group of the antimalarial drug chloroquine. It is the major species at pH 7.3.


A tertiary ammonium ion that is the conjugate acid of piroheptine, arising from the protonation of the pyrrolidine nitrogen. Major microspecies at pH 7.3.


A tertiary ammonium ion that is the conjugate acid of setiptiline obtained by protonation of the tertiary amino group. Major microspecies at pH 7.3.


A tertiary ammonium ion that is conjugate acid of galanthamine resulting from the protonation of the tertiary amino group; major species at pH 7.3.


A tertiary ammonium ion that is the conjugate acid of buzepide, resulting from the protonation of the azepane tertiary amino group. Major microspecies at pH 7.3.


A tertiary ammonium ion that is the conjugate acid of 3beta-(2-diethylaminoethoxy)androst-5-en-17-one arising from the protonation of the tertiary amino group. Major microspecies at pH 7.3.


A tertiary ammonium ion that is the conjugate acid of dasatinib, resulting from the protonation of the piperazine tertiary amino group. Major microspecies at pH 7.3.


A tertiary ammonium ion that is the conjugate acid of secodine, obtained by protonation of the nitrogen atom of the tetrahydropyridine moiety. The major microspecies at pH 7.3.


A tertiary ammonium ion that is the conjugate acid of lanperisone resulting from the protonation of the pyrrolidine nitrogen. Major microspecies at pH 7.3.


A tertiary ammonium ion that is conjugate acid of amperozide resulting from the protonation of the piperazine moiety; major species at pH 7.3.


A tertiary ammonium ion that is the conjugate acid of iptacopan resulting from the protonation of the piperidine nitrogen; Major species at pH 7.3.


A tertiary ammonium ion that is the conjugate acid of ponatinib resulting from the protonation of the piperazine nitrogen. Major microspecies at pH 7.3.


herquline A(1+)

A tertiary ammonium ion that is the conjugate acid of herquline A resulting from the protonation of the tertiary amino group; Major species at pH 7.3.


An amino acid zwitterion resulting from the transfer of a proton from the carboxy to the side-chain amino group of any N(2)-[(3R)-3-(2-hydroxyacyloxy)acyl]-L-ornithine; major species at pH 7.3.


T=219 icosahedral capsid

description: The protein coat that surrounds the infective nucleic acid in some virus particles where the subunits (capsomeres) are arranged to form an icosahedron with T=219 symmetry. T=219 icosahedral capsid is composed of 12 pentameric and 2180 hexameric capsomeres for a total of 13140 capsid proteins.


endoplasmic reticulum

description: The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).


butatriene

A cumulene containing 3 double bonds with formula C4H4.


name: interphase microtubule organizing center

description: A microtubule organizing center found in interphase cells, which organize a longitudinal array of three to five MT bundles from the nuclear envelope during interphase. Each MT bundle is composed of two to seven MTs arranged in an antiparallel configuration, with the dynamic MT plus ends extending toward the cell tips and stable minus ends near the nucleus.


An O-(S-acylpantetheine-4'-phosphoryl)-L-serine(1-) residue in which the S-acyl group is specified as (7Z)-tetradecenoyl; major species at pH 7.3.


name: 6-(4-methoxyphenoxy)-2-imidazo[1,2-b]pyridazinecarboxylic acid ethyl ester


host intracellular part

description: Any constituent part of the living contents of a host cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. The host is defined as the larger of the organisms involved in a symbiotic interaction.


host intracellular organelle

description: Organized structure of distinctive morphology and function, occurring within the host cell. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane. The host is defined as the larger of the organisms involved in a symbiotic interaction.


host cell cytoplasmic vesicle membrane

description: The lipid bilayer surrounding a host cell cytoplasmic vesicle.


host cell cytoplasm part

description: Any constituent part of the host cell cytoplasm, all of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. The host is defined as the larger of the organisms involved in a symbiotic interaction.


name: host intracellular membrane-bounded organelle

description: Organized structure of distinctive morphology and function, as found in host cells, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. The host is defined as the larger of the organisms involved in a symbiotic interaction.


Glu-Val-Thr-Leu-Tyr peptide residue

An oligopeptide residue which is part of a protein chain and has the sequence: -Glu-Val-Thr-Leu-Tyr- (-EVTLY-).


L-tyrosine-O-sulfate residue

An alpha-amino-acid residue derived from L-tyrosine-O-sulfate.


T=pseudo3 icosahedral viral capsid

description: The protein coat that surrounds the infective nucleic acid in some virus particles where the subunits (capsomeres) are arranged to form an icosahedron with pseudo T=3 symmetry. The T=pseudo3 capsid is composed of 12 pentameric and 20 hexameric capsomeres.


icosahedral viral capsid

description: The protein coat that surrounds the infective nucleic acid in some virus particles; the subunits are arranged to form an icosahedron, a solid with 20 faces and 12 vertices. Icosahedral capsids have 12 pentamers plus 10(T-1) hexamers, where T is the triangulation number. Tobacco satellite necrosis virus has such a capsid structure.


T=147 icosahedral capsid

description: The protein coat that surrounds the infective nucleic acid in some virus particles where the subunits (capsomeres) are arranged to form an icosahedron with T=147 symmetry. T=147 icosahedral capsid is composed of 12 pentameric and 1460 hexameric capsomeres for a total of 8820 capsid proteins.


T=2 icosahedral viral capsid

description: The protein coat that surrounds the infective nucleic acid in some virus particles where the subunits (capsomeres) are arranged to form an icosahedron with T=2 symmetry. The T=2 capsid is composed of 12 pentameric dimers.


T=31/pseudo31 icosahedral capsid

description: The protein coat that surrounds the infective nucleic acid in some virus particles where the subunits (capsomeres) are arranged to form an icosahedron with T=31 or pseudo T=31 symmetry.


T=27/pseudo27 icosahedral capsid

description: The protein coat that surrounds the infective nucleic acid in some virus particles where the subunits (capsomeres) are arranged to form an icosahedron with T=27 or pseudo T=27 symmetry.


T=169 icosahedral viral capsid

description: The protein coat that surrounds the infective nucleic acid in some virus particles where the subunits (capsomeres) are arranged to form an icosahedron with T=169 symmetry. T=169 icosahedral capsid is composed of 12 pentameric and 1680 hexameric capsomeres for a total of 10140 capsid proteins.


T=16 icosahedral viral capsid

description: The protein coat that surrounds the infective nucleic acid in some virus particles where the subunits (capsomeres) are arranged to form an icosahedron with T=16 symmetry. The T=16 capsid is composed of 12 pentameric and 150 hexameric capsomeres.


T=21/pseudo21 icosahedral capsid

description: The protein coat that surrounds the infective nucleic acid in some virus particles where the subunits (capsomeres) are arranged to form an icosahedron with T=21 or pseudo T=21 symmetry.


T=13 icosahedral viral capsid

description: The protein coat that surrounds the infective nucleic acid in some virus particles where the subunits (capsomeres) are arranged to form an icosahedron with T=13 symmetry. The T=13 capsid is composed of 12 pentameric and 120 hexameric capsomeres.


T=25 icosahedral viral capsid

description: The protein coat that surrounds the infective nucleic acid in some virus particles where the subunits (capsomeres) are arranged to form an icosahedron with T=25 symmetry. The T=25 capsid is composed of 12 pentameric and 240 hexameric capsomeres.


T=28 icosahedral capsid

description: The protein coat that surrounds the infective nucleic acid in some virus particles where the subunits (capsomeres) are arranged to form an icosahedron with T=28 symmetry.


T=3 icosahedral viral capsid

description: The protein coat that surrounds the infective nucleic acid in some virus particles where the subunits (capsomeres) are arranged to form an icosahedron with T=3 symmetry. The T=3 capsid is composed of 12 pentameric and 20 hexameric capsomeres.


T=7 icosahedral viral capsid

description: The protein coat that surrounds the infective nucleic acid in some virus particles where the subunits (capsomeres) are arranged to form an icosahedron with T=7 symmetry. The T=7 capsid is composed of 12 pentameric and 60 hexameric capsomeres.


T=4 icosahedral viral capsid

description: The protein coat that surrounds the infective nucleic acid in some virus particles where the subunits (capsomeres) are arranged to form an icosahedron with T=4 symmetry. The T=4 capsid is composed of 12 pentameric and 30 hexameric capsomeres.


T=1 icosahedral viral capsid

description: The protein coat that surrounds the infective nucleic acid in some virus particles where the subunits (capsomeres) are arranged to form an icosahedron with T=1 symmetry. The T=1 capsid is composed of 12 pentameric capsomeres.


An amino-acid residue formed from acetyl-2'-(5''-phosphoribosyl)-3'-dephospho-CoA serine.


An O-[S-(3R)-3-hydroxyacylpantetheine-4'-phosphoryl]serine(1-) residue in which the S-acyl group is specified as (3R,13Z,29Z)-3-hydroxyoctatetracontadienoyl.


tellurium ion

A tellurium atom having a net electric charge.


dimethyl telluride

An  organotellurium compound in which the tellurium atom is covalently  bonded to two methyl groups. A xenobiotic metabolite produced by certain strains of bacteria exposed to tellurium containing compounds.


A carbohydrate-functionalised sequence-defined oligo(amidoamine) in which an Asn-Leu-Phe-Gln-Val-Val-His-Asn-Ser-Tyr-Asn-Arg-Pro-Ala-Tyr-Ser-Pro-Gly amino acid sequence is linked via its terminal glycine residue to the terminal amino group of a (2-{[2-(4-amino-4-oxobutanamido)ethyl]amino}ethyl)amino chain, to the -NH- group proximal to the amino-acid-linked amino group  of which is also linked an alpha-L-rhamnosyl-(1->3)-beta-D-glucosyloxy disaccharide unit via a 5-(ethylsulfinyl)pentanoyl chain.


A nucleotide residue derived from N(2)-methylguanosine 5'-monophosphate


flavone

The simplest member of the class of flavones that consists of 4H-chromen-4-one bearing a phenyl substituent at position 2.


Conjugate base of bhas#30-CoA


organoberyllium compound

A compound containing at least one carbon-beryllium bond.


name: epoxyqueuosine 5'-phosphate zwitterion residue

description: A zwitterionic group obtained by transfer of a proton from the phosphate to the amino group of epoxyqueuosine 5'-phosphate residue.


cell wall-bounded periplasmic space

description: The region between the plasma membrane and the cell wall in organisms lacking an outer cell membrane such as yeast and Gram positive bacteria. The region is thinner than the equivalent in Gram negative bacteria.


mycofactocin

A small molecule derived from a peptide of the type known as RiPP (ribosomally synthesized and post-translationally modified peptides), naturally occurring in many types of Mycobacterium.


left posteriolateral flagellum

description: A cilium (also called flagellum) found in Giardia species (trophozoite stage). It is nucleated by the left posteriolateral basal body and extends cytoplasmically toward the cell posterior, marking the left anterior boundary of the lateral shield and the left lateral region of the funis before exiting at the left lateral region of the cell body.


devancoaminyl vancomycin zwitterion

A peptide zwitterion obtained by transfer of a proton from the carboxy to the amino group of devancoaminyl vancomycin.


cadmium atom

An element in the zinc group of the periodic table with atomic number 48, atomic mass 112, M.P. 321degreeC, and B.P. 765degreeC). An odourless, tasteless, and highly poisonous soft, ductile, lustrous metal with electropositive properties. It has eight stable isotopes: (106)Cd, (108)Cd,(110)Cd, (111)Cd, (112)Cd, (113)Cd, (114)Cd and (116)Cd, with (112)Cd and (114)Cd being the most common.


cadmium sulfide nanoparticle

A nanoparticle consisting of cadmium sulfide.


Thr-Ser zwitterion

A dipeptide zwitterion resulting from transfer of a proton from the carboxy to the amino group of L-threonyl-L-serine; major species at pH 7.3.


Conjugate base of ascr#27-CoA


A zwitterionic group obtained by transfer of a proton from the amino to the carboxy group of 2-[3-carboxy-3-(dimethylamino)propyl]-L-histidine residue.


A zwitterionic group obtained by transfer of a proton from the amino to the carboxy group of 2-[(3S)-3-carboxy-3-(dimethylamino)propyl]-L-histidine residue; major species at pH 7.3.


L-pyrrolysiniumyl group

The organic cationic group formed from L-pyrrolysinium; the major structure at pH 7.3 of the L-pyrrolysyl group, formed by protonation of the alpha-amino group.


wybutosine 5'-monophosphate residue

A nucleotide residue derived from wybutosine 5'-monophosphate with linkages at the 3'- and 5'-positions.


name: 3'-end deoxyribonucleotide 3'-phosphate(3-) residue

description: An organic anionic group obtained by deprotonation of the phosphate OH groups of any 3'-end deoxyribonucleotide 3'-phosphate residue.


rotaxane

A system in which at least one macrocycle encloses another, rod-like molecule (shaft) having end groups too large to pass through the ring opening, and thus holds the rod-like molecule in position without covalent bonding.


Rotaxanes consisting of a single shaft and three macrocycles.


Rotaxane consisting of a single shaft and single macrocycle.


An alkyl,acyl-sn-glycero-3-phosphoethanolamine zwitterion in which the alkyl or acyl groups at positions 1 and 2 contain a total of 30 carbons and 6 double bonds.


N(6)-methyl-L-lysine residue

An alpha-amino-acid residue derived from N(6)-methyl-L-lysine.


acetylenic compound

Any organic molecule containing a C#C bond.


terminal acetylenic compound

An acetylenic compound which a carbon of the C#C moiety is attached to a hydrogen atom.


triyne

An acetylenic compound containing three carbon-carbon triple bonds.


tetrayne

Any acetylenic compound containing four carbon-carbon triple bonds.


pentayne

Any acetylenic compound containing five carbon-carbon triple bonds.


phosphocholine group

The monodehydrogenated form of phosphocholine; the inorganic hapten formed from phosphocholine in hapten-protein conjugates.


An O-[S-(3R)-3-hydroxyacylpantetheine-4'-phosphoryl]serine(1-) residue in which the S-acyl group is specified as (3R,5Z)-3-hydroxytetracosenoyl.


ureteric bud cell

category: biolink:Cell biolink:AnatomicalEntity biolink:PhysicalEssence biolink:OrganismalEntity biolink:SubjectOfInvestigation biolink:BiologicalEntity biolink:ThingWithTaxon biolink:NamedThing biolink:PhysicalEssenceOrOccurrent

description: An epithelial cell that is part of a ureteric bud. A ureteric bud cell has the potential to induce metanephric mesenchymal cells to proliferate and convert to epithelia that form renal tubules via: (1) the secretion of multiple diffusible growth factors that rescue renal progenitors from apoptosis and stimulate them to proliferate and (2) contact-dependent mechanisms that induce mesenchymal-epithelial conversion.


interrenal epithelial cell

description: An interrenal epithelial kidney cell is an epithelial cell found in the anterior kidney of teleosts fish. This cell type is arranged in layers around the posterior cardinal vein and contains many mitochondria with tubulovesicular cristae. Interrenal chromaffin cells are interspersed among the tissue layer created by this cell type.


renal beta-intercalated cell

description: A renal intercalated cell that secretes base and reabsorbs acid in the distal segments of the kidney tubule to maintain acid/base balance.


renal principal cell

description: A cuboidal epithelial cell of the kidney which regulates sodium and potassium balance. The activity of sodium and potassium channels on the apical membrane of the cell is regulated by aldosterone and vasopressin. In mammals this cell type is located in the renal collecting duct system.


renal intercalated cell

description: A cuboidal epithelial cell of the kidney that regulates acid/base balance.


epithelial cell of intermediate tubule

description: An epithelial cell that is part of the intermediate tubule.


name: pronephric nephron tubule epithelial cell

description: Any epithelial cell that is part of some pronephric nephron tubule.


name: kidney loop of Henle descending limb epithelial cell

description: Any kidney loop of Henle epithelial cell that is part of some descending limb of loop of Henle.


epithelial cell of nephron

description: An epithelial cell that is part of the nephron.


nephron tubule epithelial cell

description: An epithelial cell that is part of a nephron tubule.


kidney loop of Henle epithelial cell

description: Any nephron tubule epithelial cell that is part of some loop of Henle.


renal alpha-intercalated cell

description: A cuboidal epithelial cell of the kidney which secretes acid and reabsorbs base to regulate acid/base balance.


An O-[S-(3R)-3-hydroxyacylpantetheine-4'-phosphoryl]serine(1-) residue in which the S-acyl group is specified as (3R,9Z,25Z)-3-hydroxytetratetracontadienoyl.


singlet dioxygen

A reactive oxygen species that is the lowest excited state of the dioxygen molecule.


glutamine hydroxamate zwitterion

An amino acid zwitterion obtained by transfer of a proton from the carboxy to the amino group of glutamine hydroxamate; major species at pH 7.3.


iron atom

An iron group element atom that has atomic number 26.


elemental iron

An elemental molecular entity in which all of the atoms have atomic number 26.


A member of the class of cyclopentanes that is cyclopentane substituted by a cyclopentylidene group at position 1.


cationic group

A group that carries an overall positive charge.


[4)-D-GlcpN-(1->](1+) residue

An organic cationic group obtained by protonation of the amino group of [4)-D-GlcpN-(1->] residue. The major structure at pH 7.3 of D-glucosamine residue.


An alpha-amino-acid residue cation obtained by protonation of the guanidine function of N(omega)-(1-hydroxy-2-oxopropyl)-L-arginine resdue.


L-leuciniumyl group

The organic cationic group formed from L-leucinium; the major structure at pH 7.3 of the L-leucyl group, formed by protonation of the alpha-amino group.


L-tryptophaniumyl group

The organic cationic group formed from L-trytophanium; the major structure at pH 7.3 of the L-tryptophyl group, formed by protonation of the alpha-amino group.


An amino-acid cation residue obtained by protonation of the amino group of (3S)-3-amino-3-(3-chloro-4-hydroxyphenyl)propanoyl residue; major species at pH 7.3.


3'-(L-lysyl)adenylyl(1+) group

An organic cationic group obtained by deprotonation of the phosphate function and protonation of the two amino functions of 3'-(L-arginyl)adenylyl group.


organic cationic group

A cationic group that contains carbon.


An alpha-amino-acid residue cation derived from N(6),N(6),N(6)-trimethyl-L-lysine.


L-asparaginiumyl group

The organic cationic group formed from L-asparaginium; the major structure at pH 7.3 of the L-asparaginyl group, formed by protonation of the alpha-amino group.


L-isoleuciniumyl group

The organic cationic group formed from L-isoleucinium; the major structure at pH 7.3 of the L-isoleucyl group, formed by protonation of the amino group.


7-methylguanosine 5'-triphosphate group

An organic cationic group derived from 7-methylguanosine 5'-triphosphate.


N,N-dimethyl-L-prolinium residue

The N,N-dimethylated derivative of L-proliniumyl group


inorganic cationic group

A cationic group that contains no carbon.


trimethylammonio group

An organic cationic group that is the univalent group derived from trimethylammonium by removal of a hydrogen atom.


An alpha-amino-acid residue cation obtained by protonation of the amino group of N(6)-(1-hydroxy-2-oxopropyl)-L-lysine residue.


L-cysteiniumyl group

The organic cationic group formed from L-cysteinium; the major structure at pH 7.3 of the L-cystyl group, formed by protonation of the alpha-amino group.


An alpha-amino-acid residue cation obtained by protonation of the guanidine function of N(omega)-(1-hydroxy-2-oxoethyl)-L-argininium residue.


An organic cationic group derived from N(2),N(2),N(7)-trimethylguanosine 5'-triphosphate.


(3R)-3-hydroxy-L-argininium residue

An amino-acid cation residue obtained by protonation of the guanidino group (3R)-3-hydroxy-L-arginine residue; major species at pH 7.3.


N,N-dimethyl-L-alaniniumyl group

An organic cationic group obtained by protonation of N,N-dimethyl-L-alaninyl group; major speciers at pH 7.3.


An alpha-amino-acid residue cation resulting from the protonation of the imine nitrogen of N(omega),N(omega)-dimethyl-L-arginine residue.


L-phenylalaniniumyl group

The organic cationic group formed from L-phenylalaninium; the major structure at pH 7.3 of the L-phenylalanyl group, formed by protonation of the alpha-amino group.


cationic amino-acid residue

An amino-acid residue protonated on nitrogen.


4-hydroxy-L-argininium residue

An L-argininium residue that is substituted by a hydroxy group at position 4; major microspecies at pH 7.3.


An alpha-amino-acid residue cation obtained by protonation of the amino group of N(6)-(1-hydroxy-2-oxoethyl)-L-lysinium residue.


5-aminomethyl-2-thiouridine residue(1+)

An organic cationic group obtained by protonation of the exocyclic amino group of 5-aminomethyl-2-thiouridine residue.


hypusine(2+) residue

An alpha-amino-acid residue cation formed by protonation of the side-chain amino groups in the hypusine residue; major species at pH 7.3.


An alpha-amino-acid residue cation obtained by protonation of the guanidino group of N(omega),N('omega)-dimethyl-L-arginine residue.


An alpha-amino-acid residue cation obtained by protonation of the amino and imino nitrogens of N-(4-aminobutylidene)-L-lysine residue; major species at pH 7.3


L-argininiumyl(2+) group

The organic cationic group formed from L-argininium(2+); the major structure at pH 7.3 of the L-arginyl group, formed by protonation of both the guanidino and alpha-amino groups.


An alpha-amino-acid residue cation obtained by protonation of the side-chain amino group of N(6)-[(R)-S(8)-aminomethyldihydrolipoyl]-L-lysine residue; major species at pH 7.3.


L-alaniniumyl group

The organic cationic group formed from L-alaninium; the major structure at pH 7.3 of the L-alanyl group, formed by protonation of the alpha-amino group.


agmatidine 5'-phosphate(1+) residue

An organic cationic group obtained by protonation of agmatidine 5'-phosphate residue; major species at pH 7.3.


L-threoniniumyl group

The organic cationic group formed from L-threoninium; the major structure at pH 7.3 of the L-threonyl group, formed by protonation of the alpha-amino group.


N(omega)-methyl-argininium(1+) residue

An alpha-amino-acid residue cation residue derived from N(omega)-methyl-arginine.


alpha-amino-acid residue cation

Any alpha-amino-acid residue that is positively charged.


L-lysiniumyl(2+) group

The organic cationic group formed from L-lysinium(2+); the major structure at pH 7.3 of the L-lysyl group, formed by protonation of the alpha- and epsilon-amino groups.


N(6)-methyl-L-lysinium residue

An alpha-amino-acid residue cation resulting from the protonation of the N(6) nitrogen of N(6)-methyl-L-lysine residue


deoxyhypusine(2+) residue

An alpha-amino-acid residue cation obtained by protonation of the side-chain amino groups of the deoxyhypusine residue; major species at pH 7.3.


3'-(L-arginyl)adenylyl(1+) group

An organic cationic group obtained by deprotonation of the phosphate function and protonation of the amino and guanidino functions of 3'-(L-arginyl)adenylyl group.


L-valiniumyl group

The organic cationic group formed from L-valinium; the major structure at pH 7.3 of the L-valyl group, formed by protonation of the alpha-amino group.


L-proliniumyl group

The organic cationic group formed from L-prolinium; the major structure at pH 7.3 of the L-prolyl group, formed by protonation of the alpha-amino group.


N(6),N(6)-dimethyl-L-lysine(1+) residue

An alpha-amino-acid residue cation derived from N(6),N(6)-dimethyl-L-lysine(1+).


L-tyrosiniumyl group

The organic cationic group formed from L-tyrosinium; the major structure at pH 7.3 of the L-tyrosyl group, formed by protonation of the alpha-amino group.


L-histidiniumyl group

The organic cationic group formed from L-histidine zwitterion;  the major structure at pH 7.3 of the L-histidyl group, formed by protonation of the alpha-amino group.


An organic anionic group obtained by deprotonation of the triphosphate OH groups of any 5'-(5'-triphosphoguanosine)-(purine-ribonucleotide) residue; major species at pH 7.3.


An organic anionic group obtained by deprotonation of the triphosphate OH groups of a 5'-(5'-triphospho-guanosine)-adenosine residue; major species at pH 7.3.


CoA ester of bkos#10


A phosphatidylinositol where R1 can be an alkyl or an acyl chain and 2R2 is an acyl chain.


tetracyclines

A subclass of polyketides having an octahydrotetracene-2-carboxamide skeleton, substituted with many hydroxy and other groups.


tetracycline zwitterion

A zwitterion obtained by transfer of a proton from the 2-hydroxy group to the 1-amino group of tetracycline. It is the major microspecies at pH 7.3 (according to Marvin v 6.2.0.).