midzonal region hepatocyte

description: Any hepatocyte that is part of the liver lobule midzonal region. These cells have mixed functionality in comparison with those in the other two regions of the liver lobule.


periportal region hepatocyte

category: biolink:Cell biolink:AnatomicalEntity biolink:PhysicalEssence biolink:OrganismalEntity biolink:SubjectOfInvestigation biolink:BiologicalEntity biolink:ThingWithTaxon biolink:NamedThing biolink:PhysicalEssenceOrOccurrent

description: Any hepatocyte that is part of the liver lobule periportal region. These cells are primarily involved in oxidative energy metabolism.


3'-(L-asparaginyl)adenylyl(1-) group

An organic anionic group obtained by deprotonation of the phosphate function of 3'-(L-asparaginyl)adenylyl group; major species at 7.3 (according to Marvin v 6.2.0.).


lanthanum-139 atom

The stable isotope of lanthanum with relative atomic mass 138.906348, 99.9 atom percent natural abundance and nuclear spin 7/2.


An organic anionic group obtained by deprotonation of the phosphate OH group of N(1)-methylguanosine 5'-monophosphate residue.


pyridine ring

A mancude six-membered heteromonocycle consisting of five carbon atoms and one oxygen atom and containing three double bonds.


2-chlorobenzoyl group

An aroyl group formed by removing the OH from the carboxy group of 2-chlorobenzoic acid.


O-[(9Z)-hexadecenoyl]-L-serine residue

An alpha-amino-acid residue that is an L-serine residue in which the alcoholic hydroxy group has been acylated with a (9Z)-hexadec-9-enoyl group.


carbon nanorod

A nanostructure produced by filling the hollow cavity of a carbon nanotube with different substance.


nanorod

A nanoscale rod composed of either metallic or semiconducting material or a mixture of both.


antimony-doped zinc oxide nanorod

A zinc oxide nanorod containing a small percentage of antimony atoms.


name: 3'-end ribonucleotide 2',3'-cyclic phosphate(2-) residue

description: An organic anionic group obtained by deprotonation of the phosphate OH groups of any 3'-end ribonucleotide 2',3'-cyclic phosphate residue.


An L-alpha-amino acid residue derived from alpha-D-xylose-(1->3)-beta-D-glucose-L-threonine.


elemental molecular entity

A molecular entity all atoms of which have the same atomic number.


magnesium cation

Any magnesium ion that is positively charged.


metal cation allergen

Any metal cation which causes the onset of an allergic reaction.


elemental molecule

A molecule all atoms of which have the same atomic number.


The selenium ion with two positive charges.


lead cation

A lead atom having a positive net electric charge.


monoatomic entity

A monoatomic entity is a molecular entity consisting of a single atom.


native element mineral

A mineral that is composed of atoms from a single element.


halide anion

A monoatomic monoanion resulting from the addition of an electron to any halogen atom.


cadmium cation

A transition element cation where the metal is specifed as cadmium.


A nickel cation in which the nickel carries a double positive charge.


aluminium cation

An aluminium atom having a positive net electric charge.


aluminium ion

An aluminium atom having a net electric charge.


gamma-carboxy-L-glutamate(2-) residue

An alpha-amino-acid residue anion obtained by deprotonation of the free carboxy groups of gamma-carboxy-L-glutamate residue; major species at pH 7.3.


2,2':6',3''-Terpyridine carrying a phenyl substituent at the 4-position of the central pyridine ring.


An N(4)-glycosylated L-asparagine residue derived from N(4)-{beta-D-Gal-(1->4)-beta-D-GlcNAc-(1->2)-[beta-D-Gal-(1->4)-beta-D-GlcNAc-(1->4)]-alpha-D-Man-(1->3)-[beta-D-Gal-(1->4)-beta-D-GlcNAc-(1->2)-[beta-D-Gal-(1->4)-beta-D-GlcNAc-(1->6)]-alpha-D-Man-(1->6)]-beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-beta-D-GlcNAc}-L-Asn.


An L-alpha-amino-acid residue derived from N(6)-acetyl-N(6)-methyl-L-lysine.


name: GPI-anchor amidated L-alanine residue(1-)

description: A GPI-anchor amidated amino acid where R1 can be an alkyl or an acyl group, R2 is an acyl group, R3 can be an acyl group or an H, R4-8 can be other sugar groups, phosphoethanolamine or H.


polonium atom

A radioactive metallic element discovered in 1898 by Marie Sklodowska Curie and named after her home country, Poland (Latin Polonia).


polonium-206 atom

The radioactive isotope of polonium with relative atomic mass 205.98047 and half-life of 8.8 days.


polonium-205 atom

The radioactive isotope of polonium with relative atomic mass 204.981165 and half-life of 1.66 h.


polonium-213 atom

The radioactive isotope of polonium with relative atomic mass 212.9928425 and half-life of 4.2 mus.


polonium-214 atom

The radioactive isotope of polonium with relative atomic mass 213.995186 and half-life of 164.3 mus.


polonium-216 atom

The radioactive isotope of polonium with relative atomic mass 216.001905 and half-life of 0.145 s.


polonium-215 atom

The radioactive isotope of polonium with relative atomic mass 214.999415 and half-life of 1.781 ms.


polonium-212 atom

The radioactive isotope of polonium with relative atomic mass 211.988852 and half-life of 0.299 mus.


polonium-218 atom

The radioactive isotope of polonium with relative atomic mass 218.008966 and half-life of 3.10 min.


polonium-207 atom

The radioactive isotope of polonium with relative atomic mass 206.981578 and half-life of 5.80 h.


polonium-211 atom

The radioactive isotope of polonium with relative atomic mass 210.986637 and half-life of 0.516 s.


polonium-208 atom

The radioactive isotope of polonium with relative atomic mass 207.98123 and half-life of 2.898 years.


organic phosphate compound

A phosphate compound with C-H bonds


spine synapse

category: biolink:CellularComponent biolink:AnatomicalEntity biolink:PhysicalEssence biolink:OrganismalEntity biolink:SubjectOfInvestigation biolink:BiologicalEntity biolink:ThingWithTaxon biolink:NamedThing biolink:PhysicalEssenceOrOccurrent

description: A type of synapse occurring between an axon and a dendritic spine.


An L-alpha-amino acid residue derived from O(3)-{beta-D-galactosyl-(1->3)-[6-O-sulfo-N-acetyl-beta-D-glucosaminyl-(1->6)]-N-acetyl-alpha-D-galactosaminyl}-L-threonine residue.


hydrocarbylidyne group

Trivalent groups, RC#, formed by removing three hydrogen atoms from the same carbon atom of a hydrocarbon, the free valencies of which are engaged in a triple bond.


cloacal villus

category: biolink:AnatomicalEntity biolink:PhysicalEssence biolink:OrganismalEntity biolink:SubjectOfInvestigation biolink:BiologicalEntity biolink:ThingWithTaxon biolink:NamedThing biolink:PhysicalEssenceOrOccurrent


short microvillus layer

description: A layer of microvilli covering lymphocytes.


proximal convoluted tubule brush border

description: A brush border layer that is part of a proximal tubule in the kidney.


brush border

description: The dense covering of microvilli on the apical surface of an epithelial cell in tissues such as the intestine, kidney, and choroid plexus; the microvilli aid absorption by increasing the surface area of the cell.


2-(trifluoromethyl)benzoyl group

The aroyl group formed by loss of -OH from the carboxy group of 2-(trifluoromethyl)benzoic acid.


organic calcium compound

A calcium compound with C-H bonds


N-terminal 5-oxo-L-proline residue

An N-terminal alpha-amino-acid residue derived from 5-oxo-L-proline.


A nucleotide residue derived from N(6)-methyladenosine 5'-monophosphate.


zinc-65 atom

A zinc atom in which the nucleus contains 35 neutrons. It has a half-life of 244 days, decaying by emission of a positron (beta(+) decay), and is the most abundant and stable of the 25 known radioisotopes of zinc.


copernicium atom

A zinc group element atom with a symbol Cn and atomic number 112. All its isotopes are intensely radioactive. Prior to its discovery, it had the placeholder name ununbium (in accordance with IUPAC recommendations). Following its discovery (in Darmstadt, 1996) and subsequent confirmation, the name copernicium was adopted in 2010.


The isotope of cadmium with relative atomic mass 112.904401, 12.2 atom percent natural abundance and nuclear spin 1/2.


aluminosilicate mineral

Silicate minerals that contain aluminium, silicon, and oxygen, together with other ions. They are a major component of clay minerals.


kaolinite

An aluminosilicate mineral with approximate chemical composition H2Al2Si2O8.H2O. Rocks that are rich in kaolinite are known as kaolin or china clay.


(8E,10E,12Z)-octadecatrienoyl group

A fatty-acyl group derived from (8E,10E,12Z)-octadecatrienoic acid


N-terminal N-acetyl-L-tyrosine residue

An N-terminal alpha-amino-acid residue derived from N-terminal N-acetyl-L-tyrosine; major microspecies at pH 7.3.


primary amino group

An amino group formed by replacement of one of the hydrogen atoms in ammonia by a group or atom other than a hydrogen atom.


tertiary amino group

An amino group formed by replacement of all three of the hydrogen atoms in ammonia by a groups or atoms other than hydrogen atoms.


(Z)-N-(2-mercaptoethenyl)amino group

A secondary amino group derived from (Z)-2-aminoethenethiol.


secondary amino group

An amino group formed by replacement of two of the hydrogen atoms in ammonia by groups or atoms other than hydrogen atoms.


free sarcoplasmic reticulum membrane

description: The part of the sarcoplasmic reticulum membrane that contains calcium pumps and is devoted to calcium uptake. The free sarcoplasmic reticulum membrane consists of the longitudinal sarcoplasmic reticulum membrane and the non-junctional region of the terminal cisterna membrane.


cyclobutadithymidine(2-) residue

An organic anionic residue formed by deprotonation of the phosphate OH groups of cyclobutadithymidine residue.


A parinaroyl group derived from (9Z,11E,13E,15Z)-octadecatetraenoic (alpha-parinaric) acid.


name: enterocyte of epithelium proper of jejunum

description: An enterocyte that is part of the epithelium proper of jejunum.


name: enterocyte of epithelium of small intestine

description: An enterocyte that is part of the epithelium of small intestine.


name: enterocyte of epithelium of crypt of Lieberkuhn of small intestine

description: An enterocyte that is part of the epithelium of crypt of Lieberkuhn of small intestine.


name: enterocyte of epithelium proper of ileum

description: An enterocyte that is part of the epithelium proper of ileum.


name: enterocyte of epithelium proper of small intestine

description: An enterocyte that is part of the epithelium proper of small intestine.


name: enterocyte of epithelium proper of duodenum

description: An enterocyte that is part of the epithelium proper of duodenum.


name: enterocyte of epithelium of intestinal villus

description: An enterocyte that is part of the epithelium of intestinal villus.


An N-terminal alpha-amino-acid residue derived from N-terminal N-acetyl-L-isoleucine; major microspecies at pH 7.3.


di-tert-butyl nitroxide

An aminoxyl that is N-tert-butyl-2-methylpropan-2-amine carrying an oxidanediyl group at the nitrogen atom.


radical

A molecular entity possessing an unpaired electron.


benzosemiquinones

A semiquinone derived from a benzoquinone by formal addition of one hydrogen atom with its electron.


An organic radical obtained by abstraction of the hydroxy proton from (3,4-dimethoxyphenyl)methanol.


aminoxyls

Radicals derived from hydroxylamines by removal of the hydrogen atom from the hydroxy group. The synonymous terms nitroxyl radicals and nitroxides erroneously suggest the presence of a nitro group.


acetyl

An organic radical derived from  acetaldehyde.


carbene

The electrically neutral species H2C(2.) and its derivatives, in which the carbon is covalently bonded to two univalent groups of any kind or a divalent group and bears two nonbonding electrons, which may be spin-paired (singlet state) or spin-non-paired (triplet state).


ethyl

An organic radical derived from ethane.


environmentally persistent free radical

Any organic free radical stabilized on or inside other fine particles (PM2.5). It is a class of toxic air pollutants that have strong durability, can generate reactive oxygen species, and cause serious environmental pollution and toxicity.


A carbene that is derived from 1H-indene.


octanoyloxidanyl

An organic radical derived from  octanoic acid.


oxomethyl

An organic radical derived from formaldehyde.


imidoyl carbene

Carbenes having the structure R-C(=NR')-C(2.)-R''.


phenolic radical donor

Any phenoxy radical that acts as an electron donor.


Carbenes containing an imidazol-2-ylidene skeleton.


acyl carbene

Any compound acyl-C(2.)-R. In organic chemistry, an unspecified acyl carbene is commonly a carboxylic acyl carbene.


The cation resulting from the protonation of the imidazole group of butaconazole.


monovalent inorganic cation

An atom or small molecule with a positive charge that does not contain carbon in covalent linkage, with a valency of one.


divalent inorganic cation

An inorganic cation with a valency of two.


O-hexadecanoyl-L-serine residue

An alpha-amino-acid residue that is an L-serine residue in which the alcoholic hydroxy group has been acylated with a hexadecanoyl group.


O-octanoyl-L-serine residue

An L-alpha-amino-acid residue that is a L-serine residue in which the alcoholic hydroxy group has been acylated with an octanoyl group.


manganese-55 atom

A stable isotope of manganese with relative atomic mass 54.93804, 100 atom percent natural abundance and nuclear spin 5/2.


An alpha-amino-acid residue anion derived from S-[(2E,6E)-farnesyl]-L-cysteine zwitterion; major species at pH 7.3.


3,3',5-triiodo-L-thyronine residue

An L-alpha-amino-acid residue derived from 3,3',5-triiodo-L-thyronine.


A pyrimidine deoxyribonucleotide(1-) residue obtained by deprotonation of the phosphate OH group of N(3)-methyl-2'-deoxycytosine 5'-monophosphate residue.


An organic anionic group obtained by deprotonation of the free phosphate OH group 5,6-dihydrouridine 5'-monophosphate residue.


N-methyl-L-aspartate residue

An L-alpha-amino acid residue that is L-aspartate residue residue bearing a single methyl substituent at the N-position.


alpha-amino-acid residue

An amino-acid residue derived from an alpha-amino acid.


An L-alpha-amino acid residue derived from O(3)-(beta-D-galactosyl-(1->3)-beta-D-galactosyl-(1->4)-beta-D-xylosyl)-L-serine


An L-alpha-amino acid residue derived from O(3)-{N-acetyl-beta-D-glucosaminyl-(1->3)-beta-D-galactosyl-(1->3)-[N-acetyl-beta-D-glucosaminyl-(1->6)]-N-acetyl-alpha-D-galactosaminyl}-L-threonine.


(4S)-4,5-dihydroxy-L-leucine residue

An L-leucine residue that is substituted by hydroxy groups at positions 4 and 5 (the 4S stereoisomer).


An L-alpha-amino acid residue derived from alpha-D-xylose-(1->3)-beta-D-glucose-L-serine.


A D-asparagine residue that is substituted by a methyl group at position N(4) and by a hydroxy group at position 3 with (R) configuration. A post-translational modification occurring on several Asn residues in polytheonamides.


An alpha-amino acid residue derived from N(4)-(beta-D-glucosyl)-L-asparagine.


An O-(pantetheine-4'-phosphoryl)-L-serine residue derivative in which the S-2-alkyl-3-oxoacyl group is the product of a Claisen-type condensation of an acyl and a 2-carboxyacyl chain.


N(6)-hexadecanoyl-L-lysine residue

An N(6)-acyl-L-lysine residue derived from N(6)-hexadecanoyl-L-lysine.


3-methylthioaspartic acid residue

An alpha-amino-acid residue derived from 3-methylthioaspartic acid.


N(4)-glycosylated L-asparagine residue

An L-asparagine residue having a glycosyl moiety attached to the side-chain amide nitrogen.


An L-alpha-amino acid residue derived from N-acetyl-beta-D-glucosaminyl-(1->3)-N-acetyl-alpha-D-galactosaminyl-L-threonine.


The L-alpha-amino acid residue formed from O-(N-acetyl-alpha-D-glucosaminyl)-L-serine.


An L-alpha-amino acid residue derived from O(3)-(beta-D-galactosyl-(1->3)-N-acetyl-alpha-D-galactosaminyl)-L-serine.


name: E-Y cross-linked EXXXY peptide residues(1-)


An alpha-amino-acid residue derived from N(6)-(S(8)-acetyldihydrolipoyl)-L-lysine.


N(4)-methyl-D-asparagine residue

A D-asparagine residue that is substituted by a methyl group at position N(4). A post-translational modification occurring on several Asn residues in polytheonamides.


Major microspecies at pH 7.3.


S-geranylgeranyl-L-cysteine residue

An alpha-amino-acid residue derived from S-geranylgeranyl-L-cysteine


An N(4)-glycosylated L-asparagine residue derived from N(4)-[alpha-D-Man-(1->2)-alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-[alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-[alpha-D-Man-(1->2)-alpha-D-Man-(1->6)]-alpha-D-Man-(1->6)]-beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-beta-D-GlcNAc]-L-Asn.


An alpha-amino-acid residue derived from N(omega),N'(omega)-dimethyl-L-arginine.


An L-alpha-amino acid residue derived from O(3)-[N-acetyl-beta-D-glucosaminyl-(1->2)-alpha-D-mannosyl]-L-serine.


N(6)-propanoyl-L-lysine residue

An N(6)-acyl-L-lysine residue derived from N(6)-propanoyl-L-lysine.


D-alpha-amino acid residue

An alpha-amino-acid residue derived from a D-alpha-amino acid.


An L-alpha-amino acid residue derived from O(3)-{beta-D-galactosyl-(1->3)-[N-acetyl-beta-D-glucosaminyl-(1->6)]-N-acetyl-alpha-D-galactosaminyl}-L-threonine


An N(4)-glycosylated L-asparagine residue derived from N(4)-{beta-D-GlcNAc-(1->2)-[beta-D-GlcNAc-(1->4)]-alpha-D-Man-(1->3)-[beta-D-GlcNAc-(1->2)-[beta-D-GlcNAc-(1->6)]-alpha-D-Man-(1->6)]-beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-beta-D-GlcNAc}-L-Asn.


An L-isoleucine residue that is substituted by hydroxy groups at positions 4 and 5 (the 3R,4R diastereoisomer).


An N(4)-glycosylated L-asparagine residue that is a representation of high mannose glucans, but it is not known exactly which high mannose glucan is modified, (see EC 2.7.8.17 and EC 3.1.4.45)


An O-(S-acylpantetheine-4'-phosphoryl)serine residue in which the S-acyl group is specified as 3,5,7,9,11,13-hexaaoxoheptadecanoyl.


3-methyl-L-isoleucine residue

A L-isoleucine residue that is substituted by a methyl group at position 3. A post-translational modification occurring on an Ile residue in polytheonamides.


An L-alpha-amino acid residue derived from N-acetyl-beta-D-galactosaminyl-(1->3)-N-acetyl-beta-D-glucosaminyl-(1->4)-alpha-D-mannosyl-L-serine.


An L-alpha-amino acid residue derived from O(3)-[N-acetyl-beta-D-glucosaminyl-(1->3)-[N-acetyl-beta-D-glucosaminyl-(1->6)]-N-acetyl-alpha-D-galactosaminyl]-L-threonine. Mucin core 4 structure attached to L-threonine residue.


O-adenyl-L-tyrosine residue

An alpha-amino-acid residue derived from O-adenyl-L-tyrosine.


(3R,4S)-3,4-dihydroxy-L-proline residue

An L-proline residue that is substituted by hydroxy groups at positions 3 and 4 (the 3R,4S diastereoisomer).


name: N-terminal proteinogenic amino-acid residue


3-nitro-L-tyrosine residue

An L-alpha-amino acid residue derived from 3-nitro-L-tyrosine.


An N(4)-glycosylated L-asparagine residue that is a representation of high mannose glucans.


An alpha-amino-acid residue derived from any  O-(S-acylpantetheine-4'-phosphoryl)serine.


3-hydroxy-D-valine residue

A D-valine residue that is substituted by a hydroxy group at position 3. A post-translational modification occurring on several Val residues in polytheonamides.


name: GPI-anchor amidated L-serine residue(1-)

description: A GPI-anchor amidated amino acid where R1 can be an alkyl or an acyl group, R2 is an acyl group, R3 can be an acyl group or an H, R4-8 can be other sugar groups, phosphoethanolamine or H.


An L-alpha-amino acid residue derived from O(3)-{6-O-sulfo-N-acetyl-beta-D-glucosaminyl-(1->3)-beta-D-galactosyl-(1->3)-N-acetyl-alpha-D-galactosaminyl}-L-serine residue.


Se-methyl-L-selenocysteine residue

An L-alpha-amino acid residue having methylselanylmethyl as the side-chain.


The residue formed from O-[N-acetyl-alpha-neuraminyl-(2->6)-N-acetyl-alpha-D-galactosaminyl]-L-threonine


N(6)-octanoyl-L-lysine residue

An alpha-amino-acid residue derived from N(6)-octanoyl-L-lysine.


hypusine residue

An alpha-amino-acid residue derived from hypusine.


N-acetylglycine residue

An alpha-amino-acid residue derived from  N-acetylglycine.


An N(4)-glycosylated asparagine residue in which the glycan moiety is a branched undecasaccharide consisting of eight D-mannosyl residues, one D-glucosyl residue and two N-acetylglucosamine residues, one of which at the reducing end is bonded to the asparagine N(4) atom.


Se-methyl-L-selenocysteinyl group

An L-alpha-amino acyl group having methylselanylmethyl as the side-chain.


N-terminal N-acetyl-L-proline residue

An N-terminal alpha-amino-acid residue derived from N-terminal N-acetyl-L-proline; major microspecies at pH 7.3.


An alpha-amino-acid residue that is L-fucose alpha1,3-linked to the innermost GlcNAc of an oligosaccharide residue linked to a glycoprotein L-asparagine residue at N(4).


An O-(S-acylpantetheine-4'-phosphoryl)-L-serine residue in which the S-acyl group is specified as decanoyl.


N(6)-lactoyl-L-lysine residue

An N(6)-acyl-L-lysine residue that has lactoyl as the N(6)-acyl group.


An N(4)-glycosylated L-asparagine residue derived from N(4)-{beta-D-GlcNAc-(1->2)-alpha-D-Man-(1->3)-[beta-D-GlcNAc-(1->2)-alpha-D-Man-(1->6)]-beta-D-Man-(1->4)-beta-D-GlcNAcl-(1->4)-[alpha-L-Fuc-(1->3)]-beta-D-GlcNAc}-Asn.


An L-alpha-amino acid residue derived from O(3)-{N-acetyl-beta-D-glucosaminyl-(1->3)-beta-D-galactosyl-(1->3)-N-acetyl-alpha-D-galactosaminyl}-L-threonine residue.


O(3)-(beta-D-xylosyl)-L-serine residue

An L-alpha-amino acid residue derived from O(3)-(beta-D-xylosyl)-L-serine.


beta-D-glucosyl-L-threonyl residue

An L-alpha-amino acid residue derived from beta-D-glucose-L-threonine.


3,3-dimethyl-L-methionine residue

An L-methionine residue that is substituted by 2 methyl groups at position 3. A post-translational modification occurring on a Met residue in polytheonamides.


An N(4)-glycosylated L-asparagine residue derived from N(4)-(alpha-D-Man-(1->3)-[alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-[alpha-D-Man-(1->6)]-alpha-D-Man-(1->6)]-beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-beta-D-GlcNAc)-L-Asn.


N(5)-methyl-L-glutamine residue

An alpha-amino-acid residue formed from N(5)-methyl-L-glutamine.


name: GPI-anchor amidated L-threonine residue(1-)

description: A GPI-anchor amidated amino acid where R1 can be an alkyl or an acyl group, R2 is an acyl group, R3 can be an acyl group or an H, R4-8 can be other sugar groups, phosphoethanolamine or H.


An L-alpha-amino acid residue derived from O-(alpha-D-mannosyl)-L-threonine.


PPEtn-SIDEA-Lys residue

An L-alpha-amino acid residue in which PPEtN is conjugated to the epsilon position of an L-lysine residue via a SIDEA linker. One of a number of structurally modified lysine residues arising from deglycosylation with trifluoromethanesulfonic acid (TFMS) of the core region of Salmonella conjugated with the carrier protein CRM197.


An L-alpha-amino acid residue derived from O(3)-{beta-D-galactosyl-(1->3)-[6-O-sulfo-N-acetyl-beta-D-glucosaminyl-(1->6)]-N-acetyl-alpha-D-galactosaminyl}-L-serine residue.


An alpha-amino-acid residue derived from 2-[3-carboxylato-3-(trimethylammonio)propyl]-L-histidine.


deoxyhypusine residue

An alpha-amino-acid residue formed from deoxyhypusine.


L-methionine sulfone residue

An L-alpha-amino acid residue derived from L-methionine sulfone.


An L-alpha-amino acid residue derived from N-acetyl-beta-D-glucosaminyl-(1->3)-N-acetyl-alpha-D-galactosaminyl-L-serine.


N-methyl-L-phenylalanine residue

An alpha-amino-acid residue formed from N-methyl-L-phenylalanine


An N(6)-(S(8)-acetyldihydrolipoyl)-L-lysine residue in which the dihydrolipoyl group has R-configuration.


N(6)-acyl-L-lysine residue

An L-alpha-amino acid residue derived from any N(6)-acyl-L-lysine.


An alpha-amino-acid residue formed from N-[2-(5-hydroxy-1H-indol-3-yl)ethyl]-L-glutamine.


EXXXY peptide residue(1-)

-L-Glu-L-Xxx-L-Xxx-L-Xxx-L-Tyr-


benzylpenicilloyl-L-lysine residue

The L-alpha-amino-acid residue derived from benzylpenicilloyl-L-lysine.


LD-Hepp4PPEtn-SIDEA-Lys residue

An L-alpha-amino acid residue in which  L-alpha-D-Hepp4PPEtN is conjugated to the epsilon position of an L-lysine residue via a SIDEA linker. One of a number of structurally modified lysine residues arising from deglycosylation with trifluoromethanesulfonic acid (TFMS) of the core region of Salmonella conjugated with the carrier protein CRM197.


L-cysteine-S-dioxide residue

An alpha-amino-acid residue derived from L-cysteine-S-dioxide.


L-alpha-amino acid residue

An alpha-amino-acid residue derived from an L-alpha-amino acid.


An L-alpha-amino acid residue derived from alpha-D-xylose-(1->3)-alpha-D-xylose-(1->3)-beta-D-glucose-L-threonine.


An L-alpha-amino acid residue derived from O(3)-(poly[(1->4)-beta-D-glucuronosyl-(1->4)-N-acetyl-alpha-D-glucosaminyl]-(1->4)-beta-D-glucuronosyl-(1->3)-beta-D-galactosyl-(1->3)-beta-D-galactosyl-(1->4)-beta-D-xylosyl)-L-serine.


S-[(2E,6E)-farnesyl]-L-cysteino group

An L-alpha-amino acid residue derived from S-[(2E,6E)-farnesyl]-L-cysteine


FMN-L-threonine residue

An alpha-amino-acid residue derived from FMN-L-threonine.


N(6)-[(R)-lipoyl]-L-lysine residue

An N(6)-lipoyl-L-lysine residue in which the lipoyl group has R-configuration.


3,5-diiodo-L-tyrosine residue

An L-alpha-amino-acid residue derived from 3,5-diiodo-L-tyrosine.


3-methyl-D-valine residue

A D-valine residue that is substituted by a methyl group at position 3. A post-translational modification occurring on several Val residues in polytheonamides.


O-octanoyl-L-threonine residue

An L-alpha-amino-acid residue that is an L-threonine residue in which the alcoholic hydroxy group has been acylated with an octanoyl group.


The L-alpha-amino acid residue formed from O-(N-acetyl-beta-D-glucosaminyl)-L-serine.


S-acyl-L-cysteine residue

An L-alpha-amino acid residue obtained from the formal condensation of the thiol group of L-cysteine residue with the carboxy group of any carboxylic acid.


name: GPI-anchor amidated amino acid carboxyl end residue(1-)

description: A GPI-anchor amidated amino acid where R1 can be an alkyl or an acyl group, R2 is an acyl group, R3 can be an acyl group or an H, R4-8 can be other sugar groups, phosphoethanolamine or H, and R9 is the side chain of a C-terminal amino acid residue.


O-methyl-L-threonine residue

An L-alpha-amino acid residue that is L-threonine residue in which the hydroxy group of the side chain is replaced by a methoxy group. It is a post-translational modification that occurs in thiocillin antibiotics.


(3R,4R)-3,4-dihydroxy-L-proline residue

A 3,4-dihydroxy-L-proline residue which has 3R,4R configuration.


The L-alpha-amino acid residue formed from N-acetyl-beta-D-glucosaminyl-(1->2)-alpha-D-mannosyl-L-threonine


amoxicillin-L-lysine residue

The L-alpha-amino-acid residue derived from amoxicillin-L-lysine.


An L-alpha-amino acid residue derived from O(3)-{beta-D-galactosyl-(1->3)-[N-acetyl-beta-D-glucosaminyl-(1->6)]-N-acetyl-alpha-D-galactosaminyl}-L-serine


3-hydroxy-L-valine residue

An L-valine residue that is substituted by a hydroxy group at position 3.


An L-alpha-amino acid residue derived from O(3)-[N-acetyl-beta-D-glucosaminyl-(1->3)-[N-acetyl-beta-D-glucosaminyl-(1->6)]-N-acetyl-alpha-D-galactosaminyl]-L-serine. Mucin core 4 structure attached to L-serine residue.


4-hydroxy-L-proline residue

An L-alpha-amino-acid residue derived from 4-hydroxy-L-proline.


An N(4)-glycosylated asparagine residue in which the glycan moiety is a branched decasaccharide consisting of eight D-mannosyl residues and two N-acetylglucosamine residues, one of which at the reducing end is bonded to the asparagine N(4) atom.


An N(4)-glycosylated L-asparagine residue derived from N(4)-{beta-D-GlcNAc-(1->2)-alpha-D-Man-(1->3)-[beta-D-GlcNAc-(1->2)-alpha-D-Man-(1->6)]-[beta-D-Xyl-(1->2)]-beta-D-Man-(1->4)-beta-D-GlcNAcl-(1->4)-beta-D-GlcNAc}-Asn.


N(tele)-phospho-L-histidine residue

An alpha-amino-acid residue derived from substitution of a phospho group on the tele N atom of an L-histidine residue.


3-selenino-L-alanine residue

An alpha-amino-acid residue derived from 3-selenino-L-alanine


An O-(S-acylpantetheine-4'-phosphoryl)-L-serine residue in which the S-acyl group is specified as 2-hydroxybenzoyl.


This compound is related to CHEBI:141767, but I am unsure how to express it in the ontology.


N(6)-tetradecanoyl-L-lysine residue

An alpha-amino-acid residue derived from N(6)-tetradecanoyl-L-lysine.


An L-alpha-amino acid residue derived from (1,4-alpha-D-glucosyl)(n)-L-tyrosine.


An L-alpha-amino acid residue derived from N-acetyl-beta-D-galactosaminyl-(1->3)-N-acetyl-beta-D-glucosaminyl-(1->4)-alpha-D-mannosyl-L-threonine.


An alpha-amino-acid residue derived from N(omega),N(omega)-dimethyl-L-arginine.


S-acetyl-L-cysteine residue

An L-alpha-amino acid residue obtained from the formal condensation of the thiol group of L-cysteine residue with acetic acid.


N(6),N(6)-dimethyl-L-lysine residue

An alpha-amino-acid residue derived from N(6),N(6)-dimethyl-L-lysine.


An N(4)-glycosylated L-asparagine residue derived from N(4)-{beta-D-GlcNAc-(1->2)-alpha-D-Man-(1->3)-[beta-D-GlcNAc-(1->4)]-[beta-D-GlcNAc-(1->2)-alpha-D-Man-(1->6)]-beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-beta-D-GlcNAc}-L-Asn


Se-methylselenocysteine residue

An alpha-amino acid residue having methylselanylmethyl as the side-chain.


Kdo-ADH-SIDEA-Lys residue

An L-alpha-amino acid residue in which 3-deoxy-D-manno-oct-2-ulosonic acid (Kdo) is conjugated to the epsilon position of an L-lysine residue via adipic acid dihydrazide (ADH) and adipic acid bis(N-hydroxysuccinimide) (SIDEA) linkers.


4-phospho-L-aspartic acid residue

An L-alpha-amino acid residue derived from 4-phospho-L-aspartic acid.


N-methyl-L-methionine residue

An alpha-amino-acid residue formed from N-methyl-L-methionine.


An N(4)-glycosylated L-asparagine residue derived from N(4)-(alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-[alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-[alpha-D-Man-(1->6)]-alpha-D-Man-(1->6)]-beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-beta-D-GlcNAc)-L-Asn.


3-sulfino-L-alanine residue

An alpha-amino-acid residue derived from 3-sulfino-L-alanine.


N-acetyl-L-alanine residue

An alpha-amino-acid residue derived from N-acetyl-L-alanine.


dehydroalanine residue

An alpha-amino-acid residue derived from 2-aminoacrylic acid (dehydroalanine).


An N(4)-glycosylated asparagine residue in which the glycan moiety is a branched undecasaccharide consisting of one D-glucosyl residue, eight D-mannosyl residues and two N-acetylglucosamine residues, one of which at the reducing end is bonded to the asparagine N(4) atom.


name: GPI-anchor amidated L-aspartate residue(2-)

description: A GPI-anchor amidated amino acid where R1 can be an alkyl or an acyl group, R2 is an acyl group, R3 can be an acyl group or an H, R4-8 can be other sugar groups, phosphoethanolamine or H.


An amino-acid residue derived from dodecanoyl-pantetheine-4-phosphorylserine.


An amino-acid residue derived from (3R)-3-hydroxypalmitoyl-pantetheine-4-phosphorylserine.


L-allysine residue

An L-alpha-amino acid residue derived from L-allysine.


An N(4)-glycosylated L-asparagine residue derived from N(4)-{beta-D-GlcNAc-(1->2)-[beta-D-GlcNAc-(1->4)]-alpha-D-Man-(1->3)-[beta-D-GlcNAc-(1->2)-[beta-D-GlcNAc-(1->4)]-[beta-D-GlcNAc-(1->6)]-alpha-D-Man-(1->6)]-beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-beta-D-GlcNAc}-L-Asn.


beta-D-glucose-L-seryl residue

An L-alpha-amino acid residue derived from beta-D-glucose-L-serine.


name: GPI-anchor amidated L-cysteine residue(1-)


S-hydroxy-L-cysteine residue

An alpha-amino-acid residue derived from S-hydroxy-L-cysteine.


An N(4)-glycosylated asparagine residue in which the glycan moiety is a branched decasaccharide consisting of eight D-mannosyl residues and two N-acetylglucosamine residues, one of which at the reducing end is bonded to the asparagine N(4) atom.


N(6)-[(E)-but-2-enoyl]-L-lysine residue

An N(6)-acyl-L-lysine residue derived from N(6)-[(E)-but-2-enoyl]-L-lysine.


S-phospho-L-cysteine residue

An alpha-amino-acid residue derived from S-phospho-L-cysteine.


An N(4)-glycosylated L-asparagine residue in which the glycosyl element is a branched  dodecasaccharide comprising a beta-D-mannosyl-(1->4)-N-acetyl-beta-D-glucosaminyl-(1->4)-[alpha-L-fucosyl (1->6)]-N-acetyl-D-glucosaminyl chain, to the mannosyl residue of which are linked (1->3) and (1->6) two alpha-sialyl-(1->6)-beta-D-galactosyl-(1->4)-N-acetyl-beta-D-glucosaminyl-(1->2)-alpha-D-mannosyl units.


3,4-dihydroxy-L-proline residue

An L-proline residue that is substituted by hydroxy groups at positions 3 and 4.


L-3-oxoalanine residue

An L-alpha-amino acid residue derived from L-3-oxoalanine.


S-oxy-L-cysteine residue

An alpha-amino-acid residue derived from S-oxy-L-cysteine.


cysteine-aspartyl residue

An alpha-amino-acid residue derived from cysteinyl-aspartic acid.


name: S-(long-chain fatty acyl)-L-cysteine residue

description: An L-alpha-amino acid residue derived from any S-(long-chain fatty acyl)-L-cysteine.


N-methyl-L-valine residue

A L-valine residue that is substituted by a methyl group on the backbone nitrogen atom. A post-translational modification occurring on several Val residues on the precursor protein of the fungal peptide macrocycle omphalotin A.


O-acetyl-L-threonine residue

An L-alpha-amino acid residue derived from O-acetyl-L-threonine.


trans-3-hydroxy-L-proline residue

An alpha-amino-acid residue derived from trans-3-hydroxy-L-proline.


N-terminal N-acetyl-L-glutamate residue

An N-terminal alpha-amino-acid residue derived from N-terminal N-acetyl-L-glutamate; major microspecies at pH 7.3.


An alpha-amino-acid residue formed from N-[2-(3,4-dihydroxyphenyl)ethyl]-L-glutamine.


An N-glycan residue involved in post-translational modification of proteins.


An L-alpha-amino acid residue derived from O(3)-{beta-D-galactosyl-(1->3)-[beta-D-galactosyl-(1->4)-6-O-sulfo-N-acetyl-beta-D-glucosaminyl-(1->6)]-N-acetyl-alpha-D-galactosaminyl}-L-serine residue.


3-trisulfanyl-L-alanine residue

An L-alpha-amino acid residue derived from 3-trisulfanyl-L-alanine.


O-hexadecanoyl-L-threonine residue

An L-alpha-amino-acid residue that is an L-threonine residue in which the alcoholic hydroxy group has been acylated with a hexadecanoyl group.


O-(alpha-D-mannosyl)-L-serine residue

An L-alpha-amino acid residue derived from O-(alpha-D-mannosyl)-L-serine.


gamma-methyl L-glutamate residue

An alpha-amino-acid residue derived from gamma-methyl glutamate.


3-methyl-L-valine residue

A L-valine residue that is substituted by a methyl group at position 3. A post-translational modification occurring on several Val residues in polytheonamides.


3-hydroxy-L-tryptophan residue

An L-tryptophan residue that is substituted by a hydroxy group at position 3.


name: N(tele)-(N(7)-methylguanosine 5'-phosphonato)-L-histidine zwitterion residue

description: A zwitterionic group obtained by deprotonation of the phosphoramidate OH group of N(tele)-(N(7)-methylguanosine 5'-phosphono)-L-histidine residue. Major microspecies at pH 7.3


An L-alpha-amino acid residue derived from O(3)-{N-acetyl-beta-D-glucosaminyl-(1->3)-beta-D-galactosyl-(1->3)-N-acetyl-alpha-D-galactosaminyl}-L-serine residue.


HOEtn-SIDEA-Lys residue

An L-alpha-amino acid residue in which HOEtN is conjugated to the epsilon position of an L-lysine residue via a SIDEA linker. One of a number of structurally modified lysine residues arising from deglycosylation with trifluoromethanesulfonic acid (TFMS) of the core region of Salmonella conjugated with the carrier protein CRM197.


3-hydroxy-L-aspartic acid residue

A 3-hydroxyaspartic acid residue in which the carbon at position 2 has S configuration.


L-6'-bromotryptophan residue

An alpha-amino-acid residue derived from L-6'-bromotryptophan.


aztreonyl-L-lysine residue

The L-alpha-amino-acid residue derived from aztreonyl-L-lysine.


O-acetyl-L-serine residue

An L-alpha-amino acid residue derived from O-acetyl-L-serine.


L-citrulline residue

An L-alpha-amino acid residue derived from L-citrulline.


An alpha-amino-acid residue formed from N-[(2R)-2-(3,4-dihydroxyphenyl)-2-hydroxyethyl]-L-glutamine.


An alpha-amino-acid residue derived from 4-methyl-2-pyrroline-5-carboxylic acid.


N-carboxy-L-methionine residue

An alpha-amino-acid residue derived from N-carboxy-L-methionine.


A 3-prenylated cyclized Trp residue found in Kawaguchipeptin A, a cyclic undecapeptide isolated from the cyanobacterium Microcystis aeruginosa (see article DOI=10.1016/0040-4020(96)00452-8)


N(6)-(fatty acyl)-L-lysine residue

An L-alpha-amino acid residue derived from any N(6)-(fatty acyl)-L-lysine.


An N(4)-glycosylated L-asparagine residue resulting from the formal condensation of the side-chain carboxamide group of the L-asparagine residue at positions 417, 423, and 556 of the genome polyprotein of hepatitis C virus subtype 1a (positions 35, 41, and 174, respectivey, in PMID:18187336) with the hemiacetal group of alpha-D-Manp-(1->3)-[alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-D-GlcpNAc.


(3S)-3,4-dihydroxy-L-proline residue

An alpha-amino-acid residue derived from (3S)-3,4-dihydroxy-L-proline.


An L-alpha-amino acid residue derived from O(3)-{N-acetyl-beta-D-glucosaminyl-(1->2)-[N-acetyl-beta-D-glucosaminyl-(1->6)]-alpha-D-mannosyl}-L-serine.


An N(4)-glycosylated asparagine residue in which the glycan moiety is a branched octasaccharide consisting of two alpha-D-mannosyl residues, one beta-D-mannosyl residue and five N-acetyl-beta-D-glucosamine residues, one of which at the reducing end is bonded to the asparagine N(4) atom.


An alpha-amino-acid residue formed from (2S,3R)-3-geranyl-2,3-dihydro-2,N(alpha)-cyclo-L-tryptophan.


diphthamide residue

An alpha-amino-acid residue derived from diphthamide.


An N(4)-glycosylated L-asparagine residue derived from N(4)-(alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-[alpha-D-Man-(1->3)-[alpha-D-Man-(1->6)]-alpha-D-Man-(1->6)]-beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-beta-D-GlcNAc)-L-Asn.


An N(4)-glycosylated L-asparagine residue derived from N(4)-{beta-D-GlcNAc-(1->2)-alpha-D-Man-(1->3)-[beta-D-GlcNAc-(1->2)-alpha-D-Man-(1->6)]-beta-D-Man-(1->4)-beta-D-GlcNAcl-(1->4)-[alpha-L-Fuc-(1->6)]-beta-D-GlcNAc}-Asn.


An amino-acid residue derived from hexadec-2-enoyl-pantetheine-4-phosphorylserine.


An L-alpha-amino acid residue derived from O-(N-acetyl-alpha-D-galactosaminyl)-L-threonine.


N(6)-acetyl-L-lysine residue

An alpha-amino-acid residue derived from N(6)-acetyl-L-lysine.


An alpha-amino-acid residue derived from O-(pantetheine-4'-phosphoryl)serine.


An L-alpha-amino acid residue derived from O(3)-(beta-D-galactosyl-(1->3)-N-acetyl-alpha-D-galactosaminyl)-L-threonine.


4-hydroxy-L-leucine residue

An L-alpha-amino acid residue derived from 4-hydroxy-L-leucine.


O-phosphocholine-L-serine residue

An L-alpha-amino-acid residue derived from O-phosphocholine-L-serine.


name: GPI-anchor amidated L-asparagine residue(1-)

description: A GPI-anchor amidated amino acid where R1 can be an alkyl or an acyl group, R2 is an acyl group, R3 can be an acyl group or an H, R4-8 can be other sugar groups, phosphoethanolamine or H.


piperacilloyl-L-lysine residue

The L-alpha-amino-acid residue derived from piperacilloyl-L-lysine.


7-hydroxy-L-tryptophan residue

An L-tryptophan residue that is substituted by a hydroxy group at position 7.


O-decanoyl-L-threonine residue

An L-alpha-amino-acid residue that is an L-threonine residue in which the alcoholic hydroxy group has been acylated with a decanoyl group.


L-homomethionine residue

An alpha-amino-acid residue derived from L-homomethionine.


An L-alpha-amino acid residue derived from N-acetyl-beta-D-glucosaminyl-(1->4)-alpha-D-mannosyl-L-threonine.


An L-alpha-amino acid residue derived from S-(1-hydroxy-2-oxopropyl)-L-cysteine.


An L-isoleucine residue that is substituted by hydroxy groups at positions 3 and 4 (the 3S,4R diastereoisomer).


N-terminal N-acetyl-L-leucyl residue

An N-terminal alpha-amino-acid residue derived from N-acetyl-L-leucine.


Se-methyl-D-selenocysteine residue

A D-alpha-amino acid residue having methylselanylmethyl as the side-chain.


SIDEA-Lys residue

An L-alpha-amino acid residue in which an adipic acid bis(N-hydroxysuccinimide) (SIDEA) linker is conjugated to the epsilon position of the L-lysine residue.


A glycan residue involved in post-translational modification of proteins.


S-methyl-L-cysteine residue

An alpha-amino-acid residue derived from S-methyl-L-cysteine.


An N(6)-acyl-L-lysine residue derived from N(6)-(2-hydroxyisobutanoyl)-L-lysine.


An L-alpha-amino acid residue derived from O(3)-(beta-D-galactosyl-(1->4)-beta-D-xylosyl)-L-serine.


2-hydroxy-L-proline residue

An L-proline residue that is substituted by a hydroxy group at position 2.


PEtn-SIDEA-Lys residue

An L-alpha-amino acid residue in which PEtN is conjugated to the epsilon position of an L-lysine residue via a SIDEA linker. One of a number of structurally modified lysine residues arising from deglycosylation with trifluoromethanesulfonic acid (TFMS) of the core region of Salmonella conjugated with the carrier protein CRM197.


N-terminal N-acetyl-L-Glu-L-Glu-L-Glu residue; major microspecies at pH 7.3


hydroxy-L-argininium residue

An L-alpha-argininium residue that is substituted by at least one hydroxy group.


erythro-L-hydroxyallysine residue

The alpha-amino-acid residue derived from erythro-L-hydroxyallysine.


An N(6)-acyl-L-lysine residue derived from N(6)-(9Z)-hexadec-9-enoyl]-L-lysine.


ADH-SIDEA-Lys residue

An L-alpha-amino acid residue in which adipic acid dihydrazide (ADH) is conjugated to the epsilon position of an L-lysine residue via an adipic acid bis(N-hydroxysuccinimide) (SIDEA) linker.


name: GIPC-anchor amidated L-aspartate residue(2-)

description: A GIPC-anchor amidated amino acid where R1 represents the shingoid base, R2 is an acyl group, R3 can be an acyl group or an H, R4-8 can be other sugar groups, phosphoethanolamine or H.


An L-alpha-amino acid residue derived from O(3)-{6-O-sulfo-N-acetyl-beta-D-glucosaminyl-(1->3)-beta-D-galactosyl-(1->3)-N-acetyl-alpha-D-galactosaminyl}-L-threonine residue.


3-hydroxyaspartic acid residue

An alpha-amino-acid residue derived from 3-hydroxyaspartic acid.


An L-alpha-amino acid residue derived from O-(N-acetyl-alpha-D-galactosaminyl)-L-serine.


An L-alpha-amino acid residue derived from N-acetyl-alpha-D-glucosaminyl-L-tyrosine.


L-seryl group

The univalent carboacyl group formed by loss of -OH from the carboxy group of L-serine.


alpha-D-glucosyl-L-tyrosyl residue

An L-alpha-amino acid residue derived from alpha-D-glucosyl-L-tyrosine.


methylimidazole crosslink between an L-cysteine residue and an L-arginine residue (PMID:30323285: Fig 4g and extended data Fig 8).


N-terminal N-acetyl-L-aspartate residue

An N-terminal alpha-amino-acid residue derived from N-terminal N-acetyl-L-aspartate; major microspecies at pH 7.3.


An L-alpha-amino acid residue derived from O(4)-(N-acetyl-alpha-D-galactosaminyl)-trans-4-hydroxy-L-proline.


N-terminal N-acetyl tripeptidic residue, composed of acidic L amino-acid (L-Asp or L-Glu)


The residue formed from O-[N-acetyl-alpha-neuraminyl-(2->6)-N-acetyl-alpha-D-galactosaminyl]-L-serine


L-glutaminiumyl group

The organic cationic group formed from L-glutaminium; the major structure at pH 7.3 of the L-glutaminyl group, formed by protonation of the alpha-amino group.


An L-alpha-amino acid residue derived from any N(4)-(oligosaccharide-(1->4)-N-acetyl-beta-D-glucosaminyl-(1->4)-N-acetyl-beta-D-glucosaminyl)-L-asparagine.


N-methyl-L-alanine residue

An alpha-amino-acid residue derived from N-methyl-L-alanine.


An L-alpha-amino acid residue derived from 5-[(alpha-D-glucopyranosyl-(1->2)-beta-D-galactopyranosyl)oxy]-L-lysine.


hydroxy-L-proline residue

An L-alpha-amino-acid residue that is substituted by at least one hydroxy group


An L-alpha-amino acid residue derived from alpha-D-xylose-(1->3)-alpha-D-xylose-(1->3)-beta-D-glucose-L-serine.


biotinyl-L-lysine residue

An alpha-amino-acid residue derived from biotinyl-L-lysine.


S-anthraniloyl-L-cysteine residue

An L-alpha-amino acid residue derived from  S-anthraniloyl-L-cysteine.


An L-alpha-amino acid residue derived from S-(1-hydroxy-2-oxoethyl)-L-cysteine.


3-iodo-L-tyrosine residue

An L-alpha-amino-acid residue derived from 3-iodo-L-tyrosine.


A zwitterionic group obtained by transfer of a proton from the amino to the carboxy group of 2-[3-carboxy-3-(methylamino)propyl]-L-histidine residue


An N(4)-glycosylated asparagine residue in which the glycan moiety is a branched nonasaccharide consisting of seven D-mannosyl residues and two N-acetylglucosamine residues, one of which at the reducing end is bonded to the asparagine N(4) atom.


glycyl-L-cysteine residue

An L-alpha-amino acid residue derived from glycyl-L-cysteine.


An N(4)-glycosylated L-asparagine residue in which the glycosyl element is a branched undecasaccharide comprising a beta-D-mannosyl-(1->4)-N-acetyl-beta-D-glucosaminyl-(1->4)-N-acetyl-D-glucosaminyl chain, to the mannosyl residue of which are linked (1->3) and (1->6) two alpha-sialyl-(1->6)-beta-D-galactosyl-(1->4)-N-acetyl-beta-D-glucosaminyl-(1->2)-alpha-D-mannosyl units.


3-disulfanyl-L-alanine residue

An alpha-amino-acid residue derived from 3-disulfanyl-L-alanine.


A zwitterionic group obtained by transfer of a proton from the amino to the carboxy group of 2-(3-amino-3-carboxypropyl)-L-histidine residue.


An N(4)-glycosylated asparagine residue in which the glycan moiety is a branched decasaccharide consisting of seven D-mannosyl residues, one D-glucosyl residue and two N-acetylglucosamine residues, one of which at the reducing end is bonded to the asparagine N(4) atom.


This compound is related to CHEBI:141769, but I am unsure how to express it in the ontology.


S-mycothiol-L-cysteine residue

A L-alpha-amino acid residue derived from S-mycothiol-L-cysteine.


An L-alpha-amino acid residue derived from N(4)-(alpha-D-glucan)-L-asparagine, in which the glucose units are connected by (1->6) linkages.


p-block molecular entity

A main group molecular entity that contains one or more atoms of a p-block element.


organogermanium compound

An organogermanium compound is a compound containing at least one carbon-germanium bond.


interhalogen compound

A molecule which contains two or more different halogen atoms (fluorine, chlorine, bromine, iodine, or astatine) and no atoms of elements from any other group.


selenium ion

A selenium atom having a net electric charge.


diselenide

Compounds having the structure RSe2R, with R =/= H.


chalcogen molecular entity

Any p-block molecular entity containing a chalcogen.


selenites

Salts and esters of selenous acid.


metal tetrahydridoborate

Compounds with the general formula MBH4.


boronate

A salt or ester of boronic acid.


dithallium

An elemental thallium that consists of two thallium atoms joined via a triple bond.


lead ion

A lead atom having a net electric charge.


selenite esters

Esters of selenous acid.


ALUMINIUM TRIS[O-ETHYLPHOSPHONATE]

An aluminium salt composed of ethyl phosphonate anions and aluminium cations in a 3:1 ratio. A fungicide for various horticultural crops used to control a range of diseases including Phytophthora, Pythium and Plasmopara.


A zwitterionic group obtained by transfer of a proton from the amino terminus to the side-chain carboxy group of L-leucyl-L-glutamyl residue; major species at pH 7.3.


N-acetyl-L-threonyl residue

An N-acyl-alpha-aminoacyl group derived from N-acetyl-L-threonine.


A deoxyribonucleotide(1-) residue that is thymidine 5'-monophosphate(1-) residue substituted by an ADP-alpha-D-ribofuranosyl group at position N(3) of the thymidine ring; Major microspecies at pH 7.3.


cytidine 5'-monophosphate residue

A canonical ribonucleotide residue derived from cytidine 5'-monophosphate


An alpha-amino-acid residue anion obtained by the addition of 3 AMP residues connected by 3'->5' phosphodiester linkages on a L-tyrosine residue; major species at pH 7.3.


An organic anionic group formed by deprotonation of the phosphate and diphospahte groups of 2'-(5''-phosphoribosyl)-3'-dephospho-CoA serine residue.


name: 5-aminomethyl-2-thiouridine 5'-monophosphate zwitterion residue

description: A zwitterionic group obtained by transfer of a proton from the phosphate to the amino group of 5-aminomethyl-2-thiouridine 5'-monophosphate residue.


S-phospho-L-cysteine(2-) residue

An alpha-amino-acid residue anion derived from S-phospho-L-cysteine(2-).


An organic anionic group obtained by deprotonation of the diphosphate OH groups of O-(ADP-D-ribosyl)-L-tyrosine residue.


octadec-6-enoyl group

An octadecenoyl group in which the olefinic double bond is at the 6-7 position.


petroselinoyl group

An octadec-6-enoyl group in which the olefinic double bond has Z configuration.


petroselaidoyl group

An octadec-6-enoyl group in which the olefinic double bond has E configuration.


6-bromohexanoyl group

The univalent carboacyl group formed by loss of -OH from the carboxy group of 6-bromohexanoic acid.


name: 7-[(3S)-(3-amino-3-methoxycarbonyl)propyl]wyosine 5'-phosphate zwitterion residue

description: A zwitterionic group obtained by transfer of a proton from the phosphate to the amino group of 7-[(3S)-(3-amino-3-methoxycarbonyl)propyl]wyosine 5'-phosphate residue.


N-acetyl-L-methionyl-L-seryl residue

A peptidyl group derived from N-acetyl-L-methionyl-L-serine.


4-(alpha-L-rhamnosyloxy)butanoyl group

The univalent carboacyl group formed by loss of -OH from the carboxy group of 4-oxobutyl alpha-L-rhamnoside [4-(alpha-L-rhamnosyloxy)butanal].


carboacyl group

A carboacyl group is a group formed by loss of at least one OH from the carboxy group of a carboxylic acid.


phthaloyl group

A divalent carboacyl group formed by removal of an OH from each carboxyl group of phthalic acid. It has been used as an amino protecting group of deoxyadenosine in oligonucleotide synthesis.


sodium amoxicilloyl group

A univalent carboacyl group formed by loss of OH from the beta-lactam-derived carboxy group of sodium amoxicilloate. The free valence at the acetyl group may form an amide linkage to the primary amino group of a protein carrier [e.g. human serum albumin (HSA)].


N-acetyl-L-methionyl-L-valyl residue

A peptidyl group derived from N-acetyl-L-methionyl-L-valine.


(9Z,11E,13E)-octadecatrienoyl group

A fatty-acyl group derived from (9Z,11E,13E)-octadecatrienoic acid.


divalent carboacyl group

A divalent carboacyl group is a group formed by loss of OH from two carboxy groups of a polycarboxylic acid.


A fatty-acyl group derived from (4Z,7Z,10Z,13Z,16Z,19Z)-docosahexaenoic acid.


(8Z,11Z,14Z,17Z)-icosatetraenoyl group

A fatty-acyl group derived from (8Z,11Z,14Z,17Z)-icosatetraenoic acid.


5'-uridylyl(1-) group

A nucleotidyl group that is the 5'-uridylyl group in which a proton has been removed from the phosphonate group.


beta-sialoyl group

The acyl group derived from any of the sialic acids in the beta configuration by removing the hydroxy group from the carboxy group.


A peptidyl group derived from N-acetyl-L-methionyl-L-isoleucine.


alpha-sialoyl group

The acyl group derived from any of the sialic acids in the alpha configuration by removing the hydroxy group from the carboxy group.


aroyl group

A univalent carboacyl group formed by loss of -OH from the carboxy group of an arene- or heteroarenecarboxylic acid.


p-nitrobenzoyl group

The aroyl group formed by loss of -OH from the carboxy group of 4-nitrobenzoic acid.


2-naphthoyl group

A naphthoyl group having the carbonyl substituent in the 2-position.


trans-dec-2-enoyl group

A trans-2-enoyl group derived from trans-dec-2-enoic acid.


N-acyl-alpha-aminoacyl group

A univalent carboacyl group derived from an N-acyl-alpha-amino acid.


1-naphthoyl group

A naphthoyl group having the carbonyl substituent in the 1-position.


A univalent carboacyl group formed by loss of OH from the carboxy group of 2-(2-hydroxyphenyl)-4,5-dihydro-1,3-thiazole-4-carboxylic acid; an intermediate of pyochelin biosynthesis (bound to carrier protein).


4-bromobenzoyl group

The aroyl group formed by loss of -OH from the carboxy group of 4-bromobenzoic acid.


A univalent carboacyl group formed by loss of OH from the carboxy group of (4-hydroxy-5-iodo-3-nitrophenyl)acetic acid.


trans-2-enoyl group

Any univalent carboacyl group that is derived from a trans-2-enoic acid.


(E)-3-(trifluoromethyl)cinnamoyl group

The univalent carboacyl group formed by loss of -OH from the carboxy group of (2E)-3-[3-(trifluoromethyl)phenyl]prop-2-enoic acid.


purin-6-oyl group

An aroyl group obtained by loss of OH from the carboxy group of purine-6-carboxylic acid.


A peptidyl group derived from N-acetyl-L-methionyl-L-phenylalanine.


A fatty-acyl group derived from (5Z,9Z,12Z,15Z)-octadecatetraenoic acid.


3-oxopalmitoyl group

The univalent carboacyl group formed by loss of -OH from the carboxy group of palmitic acid.


3-methylcinnamoyl group

The univalent carboacyl group formed by loss of -OH from the carboxy group of 3-methylcinnamic acid.


(8Z,11Z,14Z)-icosatrienoyl group

A fatty-acyl group derived from (8Z,11Z,14Z)-icosatrienoic acid.


(7Z,10Z,13Z,16Z)-docosatetraenoyl group

A fatty-acyl group derived from (7Z,10Z,13Z,16Z)-docosatetraenoic acid.


(4-hydroxy-3-nitrophenyl)acetyl group

A univalent carboacyl group formed by loss of OH from the carboxy group of (4-hydroxy-3-nitrophenyl)acetic acid.


The univalent carboacyl group formed by loss of -OH from the carboxy group of 3-[2-(trifluoromethyl)phenyl]propanoic acid.


carboxylatoacetyl group

The substituent group formed from malonate(1-) ion.


N-acetyl-L-methionyl-L-leucyl residue

A peptidyl group derived from N-acetyl-L-methionyl-L-leucine.


phthalyl group

A univalent carboacyl group formed by removal of an OH from one of the carboxyl groups of phthalic acid.


(11Z,14Z)-icosadienoyl group

A fatty-acyl group derived from (11Z,14Z)-icosadienoic acid.


N(alpha)-acetyl-L-Cys-L-Glu(1-) residue

Major microspecies at pH 7.3.


2-oxo-5,5-dimethylhexanoyl group

A post-translational modification occurring on the N-terminal Thr residue in polytheonamides.


N-acetyl-L-methionyl-L-tyrosyl residue

A peptidyl group derived from N-acetyl-L-methionyl-L-tyrosine.


N-acetyl group

An acetyl group (CHEBI:40574) attached to a nitrogen atom


octadec-9-ynoyl group

A C18 fatty-acyl group having a triple bond at the 7-position.


A univalent carboacyl group formed by loss of OH from the carboxy group of 6-[(4-hydroxy-3-nitrophenyl)acetamido]caproic acid.


A univalent carboacyl group formed by loss of OH from the carboxy group of 6-[(3-bromo-4-hydroxy-5-nitrophenyl)acetamido]caproic acid.


N,N-dimethyl-L-alanyl group

An alpha-aminoacyl group derived from N,N-dimethyl-L-alanine.


alpha-aminoacyl group

A univalent carboacyl group formed by loss of OH from the carboxy group of an alpha-amino acid.


(E)-4-(trifluoromethyl)cinnamoyl group

The univalent carboacyl group formed by loss of -OH from the carboxy group of (E)-4-(trifluoromethyl)cinnamic acid.


5-chloropentanoyl group

The univalent carboacyl group formed by loss of -OH from the carboxy group of 5-chloropentanoic acid.


(4Z)-hexadecenoyl group

A fatty-acyl group derived from (4Z)-hexadecenoic acid.


3-(trifluoromethyl)benzoyl group

The aroyl group formed by loss of -OH from the carboxy group of 3-(trifluoromethyl)benzoic acid.


3-hydroxyacyl group

Any univalent carboacyl group that is derived from a 3-hydroxycarboxylic acid.


A fatty-acyl group derived from (9Z,12Z,15Z)-octadeca-9,12,15-trien-6-ynoic acid.


(11Z)-icos-11-enoyl group

An icosenoyl group derived from (11Z)-icos-11-enoic acid (gondoic acid).


N-acetyl-L-cysteinyl residue

An N-acyl-alpha-aminoacyl group derived from N-acetyl-L-cysteine.


2-hydroxybenzoyl group

The univalent carboacyl group formed by loss of -OH from the carboxy group of salicylic acid.


4-chlorobenzoyl group

An aroyl group formed by removing the OH from the carboxy group of 4-chlorobenzoic acid.


(11Z,14Z,17Z)-icosatrienoyl group

A fatty acyl group derived from (11Z,14Z,17Z)-icosatrienoic acid.


dodecanoyl group

A fatty-acyl group derived from dodecanoic (lauric) acid.


trifluoroacetyl group

A univalent carboacyl group formed by loss of OH from the carboxy group of trifluoroacetic acid.


2,5-bis(trifluoromethyl)benzoyl group

The aroyl group formed by loss of -OH from the carboxy group of 2,5-bis(trifluoromethyl)benzoic acid.


cis-tetradec-5-enoyl group

A C14 fatty-acyl group having a cis-double bond at the 5-position.


N-acetyl-L-valyl residue

An N-acyl-alpha-aminoacyl group derived from N-acetyl-L-valine.


3-oxoacyl group

Any univalent carboacyl group that is derived from a 3-oxocarboxylic acid.


(7Z,10Z)-hexadecadienoyl group

A fatty-acyl group derived from (7Z,10Z)-hexadecadienoic acid.


(Z)-tetradec-7-enoyl group

A C14 fatty-acyl group having a (Z)-double bond at the 7-position.


naphthoyl group

An undefined naphthalenecarbonyl group


benzoyl group

The aroyl group formed by loss of OH from the carboxy group of benzoic acid; used as a protecting group in organic synthesis.


icosanoyl group

A fatty-acyl group derived from icosanoic acid.


carbamoyl group

The univalent carboacyl group formed by loss of -OH from the carboxy group of carbamic acid.


N(alpha)-acetyl-L-Cys-L-Asp(1-) residue

Major microspecies at pH 7.3.


octanoyl group

The univalent carboacyl group formed by loss of -OH from the carboxy group of octanoic acid.


cis,cis-tetradeca-5,8-dienoyl group

A C14 fatty-acyl group having cis-double bonds at the 5- and 8-positions.


univalent carboacyl group

A univalent carboacyl group is a group formed by loss of OH from the carboxy group of a carboxylic acid.


(9Z)-octadec-9-en-12-ynoyl group

A fatty-acyl group derived from (9Z)-octadec-9-en-12-ynoic acid.


4-chlorocinnamoyl group

The univalent carboacyl group formed by loss of -OH from the carboxy group of 4-chlorocinnamic acid.


A peptidyl group derived from N-acetyl-L-methionyl-L-glutamine.


icosenoyl group

A fatty acyl group derived from an icosenoic acid.


(9Z,12E)-hexadecadienoyl group

A fatty-acyl group derived from (9Z,12E)-hexadecadienoic acid


N-acetyl-L-methionyl-L-alanyl residue

A peptidyl group derived from N-acetyl-L-methionyl-L-alanine.


enoyl group

Acyl groups derived from alkenoic acids.


4-(trifluoromethyl)benzoyl group

The aroyl group formed by loss of -OH from the carboxy group of 4-(trifluoromethyl)benzoic acid.


(9Z,12E)-octadecadienoyl group

A fatty-acyl group derived from (9Z,12E)-octadecadienoic acid


carboxyacetyl group

The univalent carboacyl group formed by loss of -OH from one of the carboxy groups of malonic acid.


A fatty-acyl group derived from (5Z,8Z,11Z,14Z,17Z)-icosapentaenoic acid.


(2,2,2-trifluoroethoxy)acetyl group

The univalent carboacyl group formed by loss of -OH from the carboxy group of (2,2,2-trifluoroethoxy)acetic acid.


(7Z,10Z,13Z)-hexadecatrienoyl group

A fatty-acyl group derived from (7Z,10Z,13Z)-hexadecatrienoic acid.


fatty-acyl group

A fatty-acyl group is a group formed by loss of OH from the carboxy group of a fatty acid.


A fatty-acyl group derived from (7Z,10Z,13Z,16Z,19Z)-docosapentaenoic acid.


N-hexadecanoylglycyl group

A univalent carboacyl group derived from N-hexadecanoylglycine.


lipoyl group

A univalent carboacyl group that is derived from 5-(1,2-dithiolan-3-yl)pentanoic acid.


cyclic pyrimidine dinucleotide

cyclic pyrimidine dinucleotide


3','3-cyclic CMP-UMP(2-)

A cyclic pyrimidine dinucleotide that consists of CMP and UMP units cyclised via 3',5'-linkages, major species at pH 7.3.


germanium-73 atom

The stable isotope of germanium with relative atomic mass 72.923459, 7.73 atom percent natural abundance and nuclear spin 9/2.


An organic anionic group obtained by deprotonation of the phosphate OH group of any 3'-end 3'-(N-acyl-L-alpha-aminoacyl)adenylyl residue; major species at pH 7.3.


lithium-7 atom

The stable isotope of lithium with relative atomic mass 7.016004, 92.5 atom percent natural abundance and nuclear spin 3/2.


lithium-6 atom

The stable isotope of lithium with relative atomic mass 6.015122, 7.5 atom percent natural abundance and nuclear spin 1.


3-oxo-Delta(5)-steroid group

An organic group derived from any 3-oxo-Delta(5)-steroid.


An organic anionic group obtained by deprotonation of the phosphate OH groups and protonation of the amino function of 3'-(O-phospho-L-seryl)adenylyl group. It is the major structure at pH 7.3 (according to Marvin v 6.2.0.).


endothelial cell of vascular tree

description: An endothelial cell of the vascular tree, which includes blood vessels and lymphatic vessels.


precursor cell

description: A cell that, by division or terminal differentiation, can give rise to other cell types.


helical viral capsid

description: The protein coat that surrounds the infective nucleic acid in some virus particles; the subunits are arranged to form a protein helix with the genetic material contained within. Tobacco mosaic virus has such a capsid structure.


gas molecular entity

Any main group molecular entity that is gaseous at standard temperature and pressure (STP; 0degreeC and 100 kPa).


right anterior flagellum

description: A cilium (also called flagellum) found in Giardia species (trophozoite stage). It originates at the right anterior basal body, extends laterally through the cytoplasm, crosses the left anterior axoneme, and exits as a membrane-bound flagellum on the anterior right side of the cell.


O-phosphonato-L-seriniumyl(1-) group

The organic anionic group formed from O-phosphonato-L-serinium; the major structure at pH 7.3 of the O-phospho-L-serinyl group, formed by protonation of the alpha-amino group and deprotonation of the phosphate OH groups.


amphibole asbestos

A class of asbestos minerals that includes silicates of magnesium, iron, calcium, and sodium.


asbestos

Fibrous incombustible mineral composed of magnesium and calcium silicates with or without other elements.


The stable isotope of niobium with relative atomic mass 182.950225, 14.3 atom percent natural abundance and nuclear spin 1/2.


A organic anionic group obtained by deprotonation of the phosphate OH groups of 2'-phospho-nucleotide 5'-phosphate residue; major species at pH 7.3.


4-hydroxy-L-glutamate residue

An L-glutamate residue that is substituted by a hydroxy group at position 4; major microspecies at pH 7.3.


An alpha-amino-acid residue anion obtained by deprotonation of the carboxy group of C-terminal S-carbamoyl-L-cysteine residue; major species at pH 7.3.


A nucleotide residue derived from N(1)-methyladenosine 5'-monophosphate.


name: (gamma-L-glutamyl) N-terminal alpha-amino-acid zwitterionic residue

description: A zwitterionic group obtained by transfer of a proton from the carboxy to the amino group of any (gamma-L-glutamyl) N-terminal alpha-amino-acid residue; major species at pH 7.3.


N(tele)-phosphonato-L-histidine residue

An anionic amino-acid residue formed by loss of both protons from the phospho group of N(tele)-phospho-L-histidine residue, the principal form present at pH 7.3.


nanocrystal

Crystalline aggregates of atoms (100-10,000 atoms) with a diameter of approximately 10 nm.


gold nanocrystal

A nanocrystal composed of gold.


fort orange 600

A nanocrystalline fluorescent dye with an emission wavelength of 600 nm.


birch yellow 580

A nanocrystalline fluorescent dye with an emission wavelength of 581 nm.


Lake Placid 490

A nanocrystalline fluorescent dye with an emission wavelength of 490 nm.


adirondack green 520

A nanocrystalline fluorescent dye with an emission wavelength of 520 nm.


nanoribbon

A ribbon with nanometre width.


An organic anionic group obtained by deprotonation of 7-(2-hydroxy-3-amino-3-carboxypropyl)wyosine 5'-monophosphate residue.


gallium atom

A metallic element predicted as eka-aluminium by Mendeleev in 1870 and discovered by Paul-Emile Lecoq de Boisbaudran in 1875. Named in honour of France (Latin Gallia) and perhaps also from the Latin gallus cock, a translation of Lecoq.


phosphate group(2-)

A doubly-charged inorganic anionic group arising from deprotonation of phosphate group.


motile cell

description: A cell that moves by its own activities.


phagocyte

description: Any cell capable of ingesting particulate matter via phagocytosis.


O-phosphonato-L-threonine(2-) residue

An alpha-amino-acid residue anion derived from O-phosphonato-L-threonine(2-).


ecto-epithelial cell

description: An epithelial cell derived from ectoderm.


general ecto-epithelial cell

description: Epithelial cells derived from general body ectoderm and ectoderm placodes.


gamma-lactone ring

A five-membered lactone ring.


organic heteromonocyclic ring

A monocyclic organic group that contains both carbon and hetero atoms.


beta-lactone ring

A four-membered lactone ring.


oxolane ring

An organic heteromonocyclic ring consisting of one oxygen atom and four carbon atoms.


delta-lactone ring

A six-membered lactone ring.


epsilon-lactone ring

A seven-membered lactone ring.


4H-pyran ring

A pyran ring in which the double bonds are located at the 2,3- and 5,6-positions.


beta-lactam ring

A four-membered lactam ring.


2H-pyran ring

A pyran ring in which the double bonds are located at the 3,4- and 5,6-positions.


lactam ring

Any organic heteromonocyclic ring that contains a lactam linkage.


lactone ring

A organic heteromonocyclic ring that contains an ester (C(=O)O) linkage.


isoxazole ring

A mancude five-membered heteromonocyclic ring consisting of three carbon atoms, one nitrogen atom and one oxygen atom and containing two double bonds.


pyran ring

A mancude six-membered heteromonocyclic ring consisting of one oxygen atom and five carbon atoms and containing two double bonds.


An organic anionic group obtained by deprotonation of the phosphate OH groups of a 5'-end NAD(+)-phospho-ribonucleoside residue; major species at pH 7.3.


5'-end ribonucleotide(2-) residue

An organic anionic group obtained by deprotonation of the phosphate OH groups of any 5'-end ribonucleotide residue. Major microspecies at pH 7.3.


name: 5'-end (N(7)-methyl 5'-triphospho-guanosine)-adenosine-ribonucleotide(3-) residue

description: A 7-methyl guanosine (m7G) linked via an inverted 5'-5' triphosphate bridge to an initiating adenosine nucleotide followed by any ribonucleotide; major species at pH 7.3.


An organic anionic group obtained by deprotonation of the phosphate OH groups of a 5'-end phospho-purine ribonucleoside residue; major species at pH 7.3.


5'-end NADH(2-) residue

An organic anionic group obtained by deprotonation of the phosphate OH groups of a 5'-end NADH CAP residue; major species at pH 7.3.


5'-end phospho-adenosine(2-) residue

An organic anionic group obtained by deprotonation of the phosphate OH groups of a 5'-end phospho-adenosine residue; major species at pH 7.3.


left ventral flagellum

description: A cilium (also called flagellum) found in Giardia species (trophozoite stage). It is nucleated by the left ventral basal body and exits the cell body proximally and dorsal to the ventral disc.


plasma membrane bounded cell projection

description: A prolongation or process extending from a cell and that is bounded by plasma membrane, e.g. a cilium, lamellipodium, or axon.


9+0 non-motile cilium

description: A non-motile cilium where the axoneme has a ring of nine outer microtubule doublets but no central microtubules (and is therefore called a 9+0 axoneme).


right posteriolateral flagellum

description: A cilium (also called flagellum) found in Giardia species (trophozoite stage). It is nucleated by the right posteriolateral basal body and extends cytoplasmically toward the cell posterior, marking the right anterior boundary of the lateral shield and the right lateral region of the funis before exiting at the right lateral region of the cell body.


9+0 motile cilium

description: A motile cilium where the axoneme has a ring of nine outer microtubule doublets but no central microtubules (and is therefore called a 9+0 axoneme).


9+2 motile cilium

description: A motile cilium where the axoneme has a ring of nine outer microtubule doublets plus two central microtubules (and is therefore called a 9+2 axoneme).


non-motile cilium

description: A cilium which may have a variable array of axonemal microtubules but does not contain molecular motors.


right ventral flagellum

description: A cilium (also called flagellum) found in Giardia species (trophozoite stage). It is nucleated by the right ventral basal body and exits the cell body proximally and dorsal to the ventral disc.


right caudal flagellum

description: A cilium (also called flagellum) found in Giardia species (trophozoite stage). It is nucleated by the right caudal basal body, extending cytoplasmically and exiting at the posterior end of the cell body.


left anterior flagellum

description: A cilium (also called flagellum) found in Giardia species (trophozoite stage). It originates at the left anterior basal body, extends laterally through the cytoplasm, crosses the right anterior axoneme, and exits as a membrane-bound flagellum on the anterior left side of the cell.


photoreceptor cell cilium

description: A specialised 9+0 non-motile cilium found in photoreceptor cells. A ciliary transition zone called 'photoreceptor connecting cilium' links the photoreceptor outer segment to the inner segment.


motile cilium

description: A cilium which may have a variable arrangement of axonemal microtubules and also contains molecular motors. It may beat with a whip-like pattern that promotes cell motility or transport of fluids and other cells across a cell surface, such as on epithelial cells that line the lumenal ducts of various tissues; or they may display a distinct twirling motion that directs fluid flow asymmetrically across the cellular surface to affect asymmetric body plan organization. Motile cilia can be found in single as well as multiple copies per cell.


actin-based cell projection

description: A cell projection supported by an assembly of actin filaments, and which lacks microtubules.


rhabdomere microvillus

description: Thin cylindrical membrane-covered projection on the surface of a rhabdomere.


left caudal flagellum

description: A cilium (also called flagellum) found in Giardia species (trophozoite stage). It is nucleated by the left caudal basal body, extending cytoplasmically and exiting at the posterior end of the cell body.


longitudinal flagellum

description: A motile cilium found in dinoflagellates. It trails the cell and acts as a steering rudder. It is often partially contained in a furrow called the sulcus, and emerges from a flagellar pore located in the sulcus.


name: tRNA 3'-terminal nucleotidyl-cytidine(2-) residue

description: An organic anionic group obtained by deprotonation of the phosphate OH groups of any tRNA 3'-terminal nucleotidyl-cytidine residue.


A nucleotide residue derived from 2'-O-methyluridine 5'-monophosphate.


lysosome

description: A small lytic vacuole that has cell cycle-independent morphology found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions.


protein secreting cell

description: Any secretory cell that is capable of some protein secretion.


insulin secreting cell

description: Any secretory cell that is capable of some insulin secretion.


paneth cell

description: An epithelial cell found in the basal part of the intestinal glands (crypts of Lieberkuhn) including the appendix. Paneth cells synthesize and secrete lysozyme and cryptdins. Numerous in the deeper parts of the intestinal crypts, particularly in the duodenum, rich in zinc, contain large acidophilic granules, with irregular apical microvilli and prominent membrane-bound vacuoles containing matrix.


glycosyloxy group

An organic group obtained by removing the proton from the hemiacetal function of a monosaccharide or monosaccharide derivative and, by extension, of a lower oligosaccharide or oligosaccharide derivative.


An organic anionic group obtained by deprotonation of the phosphate OH group of any 3'-end 2'-deoxyribonucleotidyl-deoxyribonucleotide residue.


name: microfold cell of epithelium proper of jejunum

description: A M cell that is part of the epithelium proper of jejunum.


name: microfold cell of epithelium proper of ileum

description: A M cell that is part of the epithelium proper of ileum.


name: microfold cell of epithelium of small intestine

description: A M cell that is part of the epithelium of small intestine.


sulfonyl groups

Groups containing a sulfur atom doubly-bonded to two oxygen atoms.


nosyl group

A sulfonyl group having 4-nitrophenyl as the S-substituent.


phenylsulfonyl group

A sulfonyl group with a phenyl substituent.


tosyl group

A group, usually derived from the compound 4-toluenesulfonyl chloride, which forms esters and amides of toluenesulfonic acid; often used as a protecting group for alcohols and amines in organic synthesis reactions.


non-membrane-bounded organelle

description: Organized structure of distinctive morphology and function, not bounded by a lipid bilayer membrane. Includes ribosomes, the cytoskeleton and chromosomes.


An organic anionic group obtained by deprotonation of the free phosphate OH and carboxy groups of N(6)-L-threonylcarbamoyladenine 5'-monophosphate residue.


cellular anatomical entity

description: A part of a cellular organism that is either an immaterial entity or a material entity with granularity above the level of a protein complex but below that of an anatomical system. Or, a substance produced by a cellular organism with granularity above the level of a protein complex.


vacuolar lumen

description: The volume enclosed within the vacuolar membrane.


perinuclear endoplasmic reticulum lumen

description: The volume enclosed by the membranes of the perinuclear endoplasmic reticulum.


polyadic synapse

description: A synapse consisting of a single presynapse and multiple postsynapses. These postsynapses may come from the same cell of from different cells. Polyadic synapses are common in arthropod and nematode central nervous systems.


intracellular organelle lumen

description: An organelle lumen that is part of an intracellular organelle.


microbody lumen

description: The volume enclosed by the membranes of a microbody.


asymmetric synapse

description: A type of synapse occurring between an axon and a dendritic spine or dendritic shaft. Asymmetric synapses, the most abundant synapse type in the central nervous system, involve axons that contain predominantly spherical vesicles and contain a thickened postsynaptic density. Most or all synapses of this type are excitatory.


rhabdomere microvillus membrane

description: The portion of the plasma membrane surrounding a microvillus of a rhabdomere.


cell wall

description: The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins.


host cellular component

description: Any cellular component of a host cell. The host is an organism in which another organism, for instance a parasite or symbiont, spends part or all of its life cycle and from which it obtains nourishment and/or protection.


Gram-positive-bacterium-type cell wall

description: A layer of peptidoglycan found outside of the cytoplasmic membrane. The peptidoglycan is relatively thick (20-80nm) and retains the primary stain of the Gram procedure, thus cells appear blue after Gram stain. The cell walls often contain teichoic acids (acidic anionic polysaccharides) bound to the peptidoglycan. Examples of this component are found in Gram-positive bacteria.


microbody

description: Cytoplasmic organelles, spherical or oval in shape, that are bounded by a single membrane and contain oxidative enzymes, especially those utilizing hydrogen peroxide (H2O2).


right ventral basal body

description: Any ciliary basal body that is part of a right ventral flagellum found in Giardia species (trophozoite stage).


vesicle membrane

description: The lipid bilayer surrounding any membrane-bounded vesicle in the cell.


intracellular organelle

description: Organized structure of distinctive morphology and function, occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane.


terminal cisterna lumen

description: The region between the inner and outer lipid bilayers of the terminal cisterna envelope. This space is enriched in calsequestrin.


name: symmetric, GABA-ergic, inhibitory synapse

description: A neuron to neuron synapse that lacks an electron dense postsynaptic specialization, uses GABA as a neurotransmitter and whose activity results in inhibitory postsynaptic potentials.


vacuole

description: A closed structure, found only in eukaryotic cells, that is completely surrounded by unit membrane and contains liquid material. Cells contain one or several vacuoles, that may have different functions from each other. Vacuoles have a diverse array of functions. They can act as a storage organelle for nutrients or waste products, as a degradative compartment, as a cost-effective way of increasing cell size, and as a homeostatic regulator controlling both turgor pressure and pH of the cytosol.


rough endoplasmic reticulum lumen

description: The volume enclosed by the membranes of the rough endoplasmic reticulum.


cortical endoplasmic reticulum lumen

description: The volume enclosed by the membranes of the cortical endoplasmic reticulum.


spindle pole body

description: The microtubule organizing center in fungi; functionally homologous to the animal cell centrosome.


kinociliary basal body

description: A ciliary basal body that is part of a kinocilium.


mossy fiber rosette

description: A synapse of a mossy fiber onto the dendrite of a granule cell; each mossy fiber can have up to 50 rosettes.


name: endoplasmic reticulum tubular network membrane

description: The membrane of the endoplasmic reticulum tubular network.


vesicle

description: Any small, fluid-filled, spherical organelle enclosed by membrane.


organelle

description: Organized structure of distinctive morphology and function. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton, and prokaryotic structures such as anammoxosomes and pirellulosomes. Excludes the plasma membrane.


bounding membrane of organelle

description: The lipid bilayer that forms the outer-most layer of an organelle.


lytic vacuole

description: A vacuole that is maintained at an acidic pH and which contains degradative enzymes, including a wide variety of acid hydrolases.


name: perforant pathway to dendrate granule cell synapse

description: A neuron to neuron synapse of a pyramidal neuron in the entorhinal cortex onto a granule cell in the dentate gyrus of the hippocampus.


meiotic spindle pole body

description: The microtubule organizing center that forms as part of the meiotic cell cycle; functionally homologous to the animal cell centrosome.


left posteriolateral basal body

description: Any ciliary basal body that is part of a left posteriolateral flagellum found in Giardia species (trophozoite stage).


Golgi stack lumen

description: The volume enclosed by any of the membranes of the thin, flattened cisternae that form the central portion of the Golgi complex.


host cell part

description: Any constituent part of a host cell. The host is defined as the larger of the organisms involved in a symbiotic interaction.


host cell membrane

description: Double layer of lipid molecules as it encloses host cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins. The host is defined as the larger of the organisms involved in a symbiotic interaction.


organelle inner membrane

description: The inner, i.e. lumen-facing, lipid bilayer of an organelle envelope; usually highly selective to most ions and metabolites.


membrane-bounded organelle

description: Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.


cell projection

description: A prolongation or process extending from a cell, e.g. a flagellum or axon.


external encapsulating structure

description: A structure that lies outside the plasma membrane and surrounds the entire cell or cells. This does not include the periplasmic space.


organelle lumen

description: The internal volume enclosed by the membranes of a particular organelle; includes the volume enclosed by a single organelle membrane, e.g. endoplasmic reticulum lumen, or the volume enclosed by the innermost of the two lipid bilayers of an organelle envelope, e.g. nuclear lumen.


membrane

description: A lipid bilayer along with all the proteins and protein complexes embedded in it and attached to it.


description: Organized structure of distinctive morphology and function, bounded by a lipid bilayer membrane and occurring outside the cell.


glutamatergic synapse

description: A synapse that uses glutamate as a neurotransmitter.


organelle membrane

description: A membrane that is one of the two lipid bilayers of an organelle envelope or the outermost membrane of single membrane bound organelle.


synapse

description: The junction between an axon of one neuron and a dendrite of another neuron, a muscle fiber or a glial cell. As the axon approaches the synapse it enlarges into a specialized structure, the presynaptic terminal bouton, which contains mitochondria and synaptic vesicles. At the tip of the terminal bouton is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic terminal bouton secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane.


Schaffer collateral - CA1 synapse

description: A synapse between the Schaffer collateral axon of a CA3 pyramidal cell and a CA1 pyramidal cell.


symmetric synapse

description: A synapse that lacks an electron dense postsynaptic specialization. In vertebtrates, these occur primarily on dendrite shafts and neuronal cell bodies and involve persynapses containing clusters of predominantly flattened or elongated vesicles and are typically inhibitory.


extracellular vesicle

description: Any vesicle that is part of the extracellular region.


neuron to neuron synapse

description: A synapse in which pre and post-synaptic cells are neurons.


serotonergic synapse

description: A synapse that uses serotonin as a neurotransmitter.


description: Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.


microbody membrane

description: The lipid bilayer surrounding a microbody.


right anterior basal body

description: Any ciliary basal body that is part of a right anterior flagellum found in Giardia species (trophozoite stage).


right posteriolateral basal body

description: Any ciliary basal body that is part of a right posteriolateral flagellum found in Giardia species (trophozoite stage).


smooth endoplasmic reticulum lumen

description: The volume enclosed by the membranes of the smooth endoplasmic reticulum.


septal periplasm

description: The region between the plasma membrane and the cell wall, as found in organisms such as filamentous fungi.


dopaminergic synapse

description: A synapse that uses dopamine as a neurotransmitter.


noradrenergic synapse

description: A synapse that uses noradrenaline as a neurotransmitter.


description: The part of the sarcoplasmic reticulum membrane that contains calcium release channels, is devoted to calcium release and is juxtaposed to transverse tubule membrane. The junctional sarcoplasmic reticulum membrane consists of the junctional region of the terminal cisterna membrane.


organelle envelope lumen

description: The region between the inner and outer lipid bilayers of an organelle envelope.


plasma membrane region

description: A membrane that is a (regional) part of the plasma membrane.


mitochondrial membrane

description: Either of the lipid bilayers that surround the mitochondrion and form the mitochondrial envelope.


membrane-enclosed lumen

description: The enclosed volume within a sealed membrane or between two sealed membranes. Encompasses the volume enclosed by the membranes of a particular organelle, e.g. endoplasmic reticulum lumen, or the space between the two lipid bilayers of a double membrane surrounding an organelle, e.g. nuclear envelope lumen.


extracellular organelle

description: Organized structure of distinctive morphology and function, occurring outside the cell. Includes, for example, extracellular membrane vesicles (EMVs) and the cellulosomes of anaerobic bacteria and fungi.


organelle envelope

description: A double membrane structure enclosing an organelle, including two lipid bilayers and the region between them. In some cases, an organelle envelope may have more than two membranes.


cell projection membrane

description: The portion of the plasma membrane surrounding a plasma membrane bounded cell surface projection.


GABA-ergic synapse

description: A synapse that uses GABA as a neurotransmitter. These synapses are typically inhibitory.


inhibitory synapse

description: A synapse in which an action potential in the presynaptic cell reduces the probability of an action potential occurring in the postsynaptic cell.


amphisome

description: Intermediate organelles formed during macroautophagy through the fusion between autophagosomes and endosomes.


vacuolar membrane

description: The lipid bilayer surrounding the vacuole and separating its contents from the cytoplasm of the cell.


name: enterocyte of epithelium of duodenal gland

description: An enterocyte that is part of the epithelium of duodenal gland.


fluorine-18 atom

The radioactive isotope of fluorine with relative atomic mass 18.000938. The longest-lived fluorine radionuclide with half-life of 109.77 min.


A nucleotide residue derived from 5-carboxymethylaminomethyl-2'-O-methyluridine 5'-monophosphate.


Major species at pH 7.3


3-thio-L-aspartate residue

An alpha-amino-acid residue anion obtained by deprotonation of the carboxy group of 3-thio-L-aspartic acid residue.


blood cell

description: A cell found predominately in the blood.


A carbohydrate-functionalised sequence-defined oligo(amidoamine) in which an Asn-Leu-Phe-Gln-Val-Val-His-Asn-Ser-Tyr-Asn-Arg-Pro-Ala-Tyr-Ser-Pro-Gly amino acid sequence is linked via its terminal glycine residue to the amino group at C-1 of a 54-amino-7,10,18,21,29,32,40,43,51,54-decaoxo-3,6,11,14,17,22,25,28,33,36,39,44,47,50-tetradecaazatetrapentacont-1-ylamino chain, to the -NH- groups at positions 3, 14, 25, 36 and 47 of which are also linked alpha-L-rhamnosyl-(1->3)-beta-D-glucosyloxy disaccharide units via 5-(ethylsulfinyl)pentanoyl chains.


oligo(amidoamine)

An oligomer composed of amino (-NH-) and amido (-C(=O)NH-) units.


tellurium-125 atom

The stable isotope of tellurium with relative atomic mass 124.904425, 71.4 atom percent natural abundance and nuclear spin 1/2.


nanoshell

A nanoparticle composed of a metallic shell (e.g. gold) surrounding a semiconductor (e.g. silicon).


epithelial cell of small intestine

description: An epithelial cell of the small intestine.


vacuolated fetal-type enterocyte

description: An enterocyte found in the small intestine of newborn mammals and characterized by the presence of an apical canalicular system (ACS) leading to production of large vacuoles, important for colostral macromolecule uptake. After birth, the vacuolated fetal-type enterocytes are replaced with enterocytes lacking an ACS.


small intestine glandular cell

description: A glandular cell found in the epithelium of the small intestine. Example: Enterocytes, Goblet cells, enteroendocrine cells; Paneth cells; M cells; Somatostatin-secreting Cells (D-cells) .


endothelial cell of Peyer's patch

description: An endothelial cell that is part of the small intestine Peyer's patch.


phosphorus-32 atom

The radioactive isotope of phosphorus with relative atomic mass 31.973907 and half-life of 14.26 days.


oxygen-16 atom

The stable isotope of oxygen with relative atomic mass 15.994914. The most abundant (99.76 atom percent) isotope of naturally occurring oxygen.


oxygen-15 atom

The radioactive isotope of oxygen with relative atomic mass 15.003065. The longest-lived oxygen radionuclide with half-life of 122.2 s.


sulfur-35 atom

The radioactive isotope of sulfur with relative atomic mass 34.9690322 and nuclear spin (3)/2. The longest-lived sulfur radionuclide with half-life of 87.5 days.


iodine-127 atom

The stable isotope of iodine with relative atomic mass 126.904468, 100 atom percent natural abundance and nuclear spin 5/2.


sulfur-34 atom

The stable isotope of sulfur with relative atomic mass 33.9678668 and 4.21 atom percent natural abundance.


bromine-79 atom

The stable isotope of bromine with relative atomic mass 78.918338, 50.69 atom percent natural abundance and nuclear spin 3/2.


sulfur-38 atom

The radioactive isotope of sulfur with relative atomic mass 37.97116 and half-life of 170.3 min.


sulfur-33 atom

The stable isotope of sulfur with relative atomic mass 32.9714585, 0.75 atom percent natural abundance, and nuclear spin (3)/2.


deuterium atom

The stable isotope of hydrogen with relative atomic mass 2.014102 and a natural abundance of 0.0115 atom percent (from Greek deltaepsilonupsilontauepsilonrhoomicronnu, second).


sulfur-32 atom

The stable isotope of sulfur with relative atomic mass 31.972071. The most abundant (95.02 atom percent) isotope of naturally occurring sulfur.


sulfur-36 atom

The stable isotope of sulfur with relative atomic mass 35.9670809. The least abundant (0.02 atom percent) isotope of naturally occurring sulfur.


iodine-129 atom

The isotope of iodine with relative atomic mass 128.904988, and nuclear spin 7/2.


fluorine-19 atom

The stable isotope of fluorine with relative atomic mass 18.998403 and nuclear spin (1)/2.


protium atom

The stable isotope of hydrogen with relative atomic mass 1.007825 and a natural abundance of 99.9885 atom percent (from Greek pirhoomegatauomicronsigma, first).


boron-11 atom

The stable isotope of boron with relative atomic mass 11.009306, 80.1 atom percent natural abundance and nuclear spin 3/2.


phosphorus-31 atom

The stable isotope of phosphorus with relative atomic mass 30.973762 and nuclear spin (1)/2.


An alpha-amino-acid residue anion obtained by deprotonation of the phosphate OH groups of N-acetyl-beta-D-galactosaminyl-(1->3)-N-acetyl-beta-D-glucosaminyl-(1->4)-6-O-phosphono-alpha-D-mannosyl-L-threonine residue


A ring assembly compound consisting of two flaviolin units joined by a 3,3'-linkage.


Qdot 605

A quantum dot fluorescent dye with an emission wavelength of 604 nm.


dAMP 3'-end residue

The 3'-end bound-monomer of a deoxyadenylyl-5'-monophosphoric acid that is part of a nucleic acid.


dAMP 5'-end residue

The 5'-end bound-monomer of a deoxyadenylyl-5'-monophosphoric acid that is part of a nucleic acid.


dCMP 5'-end residue

The 5'-end bound-monomer of a deoxycytidylyl-5'-monophosphoric acid that is part of a nucleic acid.


A canonical deoxyribonucleotide residue derived from 2'-deoxyadenosine 5'-monophosphate (dAMP).


dTMP 3'-end residue

The 3'-end bound-monomer of a thymidylyl-5'-monophosphoric acid that is part of a nucleic acid.


thymidine 5'-monophosphate residue

The canonical deoxyribonucleotide residue formed from dTMP (5'-thymidylic acid).


A canonical deoxyribonucleotide residue derived from deoxycytidine 5'-monophosphate.


A nucleotide residue derived from 5-methylcytidine 5'-monophosphate.


A deuterated compound that is diazepam in which all eight hydrogen atoms of the methyl and phenyl groups are replaced by deuterium.


A zwitterionic group derived from O-[S-(L-alloisoleucyl)pantetheine-4'-phosphoryl]serine residue; major species at pH 7.3.


3'-(L-homoseryl)adenylyl residue

An organic anionic group obtained by deprotonation of the phosphate group of 3'-(L-homoseryl)adenylyl zwitterion residue; major microspecies at pH 7.3


An organic anionic group obtained by deprotonation of the phosphate OH groups of a 5'-end phospho-adenosine residue followed by any ribonucleotide; major species at pH 7.3.


ion

A molecular entity having a net electric charge.


monovalent inorganic anion

Any inorganic anion with a valency of one.


hydroxyazanide

An inorganic anion that is the conjugate base of hydroxylamine, arising from deprotonation of the amino function.


anion

A monoatomic or polyatomic species having one or more elementary charges of the electron.


molecular ion

In mass spectrometry, a molecular ion is an ion formed by the removal from (positive ions) or addition to (negative ions) a molecule of one or more electrons without fragmentation of the molecular structure.


trivalent inorganic anion

Any inorganic anion with a valency of three.


caesium ion

A caesium atom having a net electric charge.


nickel ion

A nickel atom having a net electric charge.


polyatomic ion

An ion consisting of more than one atom.


divalent inorganic anion

Any inorganic anion with a valency of two.


neural cell

description: A cell that is part of the nervous system.


photoreceptor cell

description: A cell specialized to detect and transduce light.


sensory neuron

description: Any neuron having a sensory function; an afferent neuron conveying sensory impulses.


afferent neuron

description: A neuron which conveys sensory information centrally from the periphery.


neuronal receptor cell

description: Any sensory receptor cell that is a(n) neuron and is capable of some detection of stimulus involved in sensory perception.


neuron

description: The basic cellular unit of nervous tissue. Each neuron consists of a body, an axon, and dendrites. Their purpose is to receive, conduct, and transmit impulses in the nervous system.


An organic anionic group obtained by deprotonation of the phosphate OH group of 4-demethylwyosine 5'-monophosphate residue.


4-phospho-L-aspartate(2-) residue

Major species at pH 7.3.


metal-sulfur cluster

A metal-sulfur cluster is a unit comprising two or more metal atoms and bridging sulfur ligand(s).


H group

An inorganic group that is the substituent group from molecular hydrogen.


5'-end triphospho-adenosine(4-) residue

An organic anionic group obtained by deprotonation of the triphosphate OH groups of a 5'-end triphospho-adenosine residue; major species at pH 7.3.


An amino-acid residue that is formed when the carboxy group of any amino acid (where R is the side chain) undergoes a cyclodehydration reaction with a neighboring L-serine amino acid in a protein, resulting in the formation of a 2-oxazoline moiety.


The radioactive isotope of thallium with relative atomic mass 200.9708 and half-life of 72.912 hours.


oligopeptide residue

A peptide residue containing a relatively small number of amino acid units.


peptide residue

An organic group resulting from the scission of two peptide bonds to afford a residue containing a peptide fragment.


procollagen amino-acid residue

An amino-acid residue that occurs in procollagen.


helical rosette nanotube

Organic nanotubes which self-assemble from macrocycles.


heterocyclyl group

A univalent group formed by removing a hydrogen atom from any ring atom of a heterocyclic compound.


pseudouridine 5'-phosphate residue

A nucleotide residue derived from pseudouridine 5'-phosphate.


A nucleotide residue derived from N(4)-methylcytidine 5'-monophosphate.


A nucleotide residue derived from 7-[(3S)-(3-amino-3-methoxycarbonyl)propyl]wyosine 5'-phosphate.


A nucleotide residue derived from N(3)-methylcytidine 5'-monophosphate.


The nucleotide residue formed from 7-(2-hydroxy-3-amino-3-carboxypropyl)wyosine 5'-monophosphate with linkages at the 3' and 5' positions.


A nucleotide residue derived from 5-methyluridine 5'-monophosphate.


The nucleotide residue formed from 7-[(3S)-3-amino-3-carboxypropyl]wyosine 5'-monophosphate with linkages at the 3' and 5' positions.


A nucleotide residue derived from N(6)-L-threonylcarbamoyladenine 5'-monophosphate with linkages at the 3'- and 5'-positions.


A nucleotide residue derived from 4-demethylwyosine 5'-monophosphate with linkages at the 3'- and 5'-positions.


A nucleotide residue derived from 2-methyladenosine 5'-monophosphate.


An organic anionic group obtained by deprotonation of the phosphate function of 3-methyldeoxyadenosine 5'-monophosphate residue; major species at pH 7.3.


AMP 3'-end residue

The 3'-end bound-monomer of a adenylyl-5'-monophosphoric acid that is part of a nucleic acid.


A nucleotide residue derived from N(3)-methylpseudouridine 5'-monophosphate.


locked nucleotide residue

A nucleic acid residue that contains a 'locked' deoxyribose unit.


IMP residue

A canonical ribonucleotide residue derived from IMP.


adenosine 5'-monophosphate residue

A canonical ribonucleotide residue derived from adenosine 5'-monophosphate.


UMP 5'-end residue

The 3'-end bound-monomer of a uridylyl-5'-monophosphoric acid that is part of a nucleic acid.


A nucleotide residue derived from 2-methylthio-N(6)-L-threonylcarbamoyladenine 5'-monophosphate with linkages at the 3'- and 5'-positions.


The nucleotide residue formed from 4-demethyl-7-(3-amino-3-carboxypropyl)wyosine 5'-monophosphate with linkages at the 3' and 5' positions.


A nucleotide residue derived from 5-(carboxymethyl)uridine 5'-monophosphate.


A nucleotide residue derived from 8-methyladenosine 5'-monophosphate.


A nucleotide residue derived from 5-hydroxymethylcytidine 5'-monophosphate.


A nucleotide residue derived from N(4)-methylcytidine 5'-monophosphate.


A nucleotide residue derived from 2'-O-methylguanosine 5'-monophosphate.


A nucleotide residue derived from N(2),N(2)-dimethylguanosine 5'-monophosphate.


AMP 5'-end residue

The 5'-end bound-monomer of a adenylyl-5'-monophosphoric acid that is part of a nucleic acid.


A nucleotide residue derived from N(1)-methylguanosine 5'-monophosphate with linkages at the 3'- and 5'-positions.