{
  "@context": {
    "@vocab": "https://schema.org/",
    "biolink": "https://w3id.org/biolink/"
  },
  "@type": "DigitalDocument",
  "@id": "https://robokop.renci.org/graphs/GTEx_Automat/2ad22865c5fb3c6a/schema.json",
  "name": "GTEx Schema",
  "description": "Schema describing the nodes, edges, and attributes in the GTEx knowledge graph",
  "encodingFormat": "application/ld+json",
  "isPartOf": {
    "@type": "Dataset",
    "@id": "https://robokop.renci.org/graphs/GTEx_Automat/2ad22865c5fb3c6a/",
    "name": "GTEx"
  },
  "schema": {
    "nodes": [
      {
        "category": [
          "biolink:Gene"
        ],
        "count": 58473,
        "id_prefixes": {
          "NCBIGene": 35702,
          "ENSEMBL": 22771
        },
        "attributes": {
          "name": 58473,
          "equivalent_identifiers": 58473,
          "information_content": 19611
        }
      },
      {
        "category": [
          "biolink:SequenceVariant"
        ],
        "count": 4839579,
        "id_prefixes": {
          "CAID": 4839579
        },
        "attributes": {
          "name": 4839579,
          "equivalent_identifiers": 4839579,
          "hgvs": 4839579,
          "robokop_variant_id": 4839579
        }
      }
    ],
    "nodes_summary": {
      "total_count": 4898052,
      "id_prefixes": {
        "CAID": 4839579,
        "NCBIGene": 35702,
        "ENSEMBL": 22771
      },
      "attributes": {
        "name": 4898052,
        "equivalent_identifiers": 4898052,
        "hgvs": 4839579,
        "robokop_variant_id": 4839579,
        "information_content": 19611
      }
    },
    "edges": [
      {
        "subject_category": [
          "biolink:SequenceVariant"
        ],
        "predicate": "biolink:is_nearby_variant_of",
        "object_category": [
          "biolink:Gene"
        ],
        "count": 29992473,
        "primary_knowledge_sources": {
          "infores:robokop-snpeff": 29992473
        },
        "qualifiers": {},
        "attributes": {
          "knowledge_level": 29992473,
          "agent_type": 29992473,
          "snpeff_effect": 29992473,
          "original_subject": 29992473,
          "original_object": 29992473,
          "distance_to_feature": 29540670
        },
        "subject_id_prefixes": {
          "CAID": 29992473
        },
        "object_id_prefixes": {
          "NCBIGene": 19525893,
          "ENSEMBL": 10466580
        }
      },
      {
        "subject_category": [
          "biolink:SequenceVariant"
        ],
        "predicate": "biolink:is_non_coding_variant_of",
        "object_category": [
          "biolink:Gene"
        ],
        "count": 3601679,
        "primary_knowledge_sources": {
          "infores:robokop-snpeff": 3601679
        },
        "qualifiers": {},
        "attributes": {
          "knowledge_level": 3601679,
          "agent_type": 3601679,
          "snpeff_effect": 3601679,
          "original_subject": 3601679,
          "original_object": 3601679,
          "distance_to_feature": 126015
        },
        "subject_id_prefixes": {
          "CAID": 3601679
        },
        "object_id_prefixes": {
          "NCBIGene": 3005990,
          "ENSEMBL": 595689
        }
      },
      {
        "subject_category": [
          "biolink:SequenceVariant"
        ],
        "predicate": "biolink:affects",
        "object_category": [
          "biolink:Gene"
        ],
        "count": 18543717,
        "primary_knowledge_sources": {
          "infores:gtex": 18543717
        },
        "qualifiers": {
          "object_aspect_qualifier": 18543717,
          "object_direction_qualifier": 14677764,
          "qualified_predicate": 14677764
        },
        "attributes": {
          "expressed_in": 18543717,
          "p_value": 18543717,
          "slope": 18543717,
          "knowledge_level": 18543717,
          "agent_type": 18543717,
          "original_subject": 18543717,
          "original_object": 18543717
        },
        "subject_id_prefixes": {
          "CAID": 18543717
        },
        "object_id_prefixes": {
          "NCBIGene": 15099173,
          "ENSEMBL": 3444544
        }
      },
      {
        "subject_category": [
          "biolink:SequenceVariant"
        ],
        "predicate": "biolink:is_synonymous_variant_of",
        "object_category": [
          "biolink:Gene"
        ],
        "count": 26529,
        "primary_knowledge_sources": {
          "infores:robokop-snpeff": 26529
        },
        "qualifiers": {},
        "attributes": {
          "knowledge_level": 26529,
          "agent_type": 26529,
          "snpeff_effect": 26529,
          "original_subject": 26529,
          "original_object": 26529
        },
        "subject_id_prefixes": {
          "CAID": 26529
        },
        "object_id_prefixes": {
          "NCBIGene": 26155,
          "ENSEMBL": 374
        }
      },
      {
        "subject_category": [
          "biolink:SequenceVariant"
        ],
        "predicate": "biolink:related_to",
        "object_category": [
          "biolink:Gene"
        ],
        "count": 695,
        "primary_knowledge_sources": {
          "infores:robokop-snpeff": 695
        },
        "qualifiers": {},
        "attributes": {
          "knowledge_level": 695,
          "agent_type": 695,
          "snpeff_effect": 695,
          "original_subject": 695,
          "original_object": 695
        },
        "subject_id_prefixes": {
          "CAID": 695
        },
        "object_id_prefixes": {
          "NCBIGene": 678,
          "ENSEMBL": 17
        }
      },
      {
        "subject_category": [
          "biolink:SequenceVariant"
        ],
        "predicate": "biolink:is_missense_variant_of",
        "object_category": [
          "biolink:Gene"
        ],
        "count": 25889,
        "primary_knowledge_sources": {
          "infores:robokop-snpeff": 25889
        },
        "qualifiers": {},
        "attributes": {
          "knowledge_level": 25889,
          "agent_type": 25889,
          "snpeff_effect": 25889,
          "original_subject": 25889,
          "original_object": 25889
        },
        "subject_id_prefixes": {
          "CAID": 25889
        },
        "object_id_prefixes": {
          "NCBIGene": 25368,
          "ENSEMBL": 521
        }
      },
      {
        "subject_category": [
          "biolink:SequenceVariant"
        ],
        "predicate": "biolink:is_frameshift_variant_of",
        "object_category": [
          "biolink:Gene"
        ],
        "count": 883,
        "primary_knowledge_sources": {
          "infores:robokop-snpeff": 883
        },
        "qualifiers": {},
        "attributes": {
          "knowledge_level": 883,
          "agent_type": 883,
          "snpeff_effect": 883,
          "original_subject": 883,
          "original_object": 883
        },
        "subject_id_prefixes": {
          "CAID": 883
        },
        "object_id_prefixes": {
          "NCBIGene": 858,
          "ENSEMBL": 25
        }
      },
      {
        "subject_category": [
          "biolink:SequenceVariant"
        ],
        "predicate": "biolink:is_splice_site_variant_of",
        "object_category": [
          "biolink:Gene"
        ],
        "count": 12398,
        "primary_knowledge_sources": {
          "infores:robokop-snpeff": 12398
        },
        "qualifiers": {},
        "attributes": {
          "knowledge_level": 12398,
          "agent_type": 12398,
          "snpeff_effect": 12398,
          "original_subject": 12398,
          "original_object": 12398,
          "distance_to_feature": 31
        },
        "subject_id_prefixes": {
          "CAID": 12398
        },
        "object_id_prefixes": {
          "NCBIGene": 10289,
          "ENSEMBL": 2109
        }
      },
      {
        "subject_category": [
          "biolink:SequenceVariant"
        ],
        "predicate": "biolink:is_nonsense_variant_of",
        "object_category": [
          "biolink:Gene"
        ],
        "count": 413,
        "primary_knowledge_sources": {
          "infores:robokop-snpeff": 413
        },
        "qualifiers": {},
        "attributes": {
          "knowledge_level": 413,
          "agent_type": 413,
          "snpeff_effect": 413,
          "original_subject": 413,
          "original_object": 413
        },
        "subject_id_prefixes": {
          "CAID": 413
        },
        "object_id_prefixes": {
          "NCBIGene": 398,
          "ENSEMBL": 15
        }
      }
    ],
    "edges_summary": {
      "total_count": 52204676,
      "predicates": {
        "biolink:is_nearby_variant_of": 29992473,
        "biolink:affects": 18543717,
        "biolink:is_non_coding_variant_of": 3601679,
        "biolink:is_synonymous_variant_of": 26529,
        "biolink:is_missense_variant_of": 25889,
        "biolink:is_splice_site_variant_of": 12398,
        "biolink:is_frameshift_variant_of": 883,
        "biolink:related_to": 695,
        "biolink:is_nonsense_variant_of": 413
      },
      "primary_knowledge_sources": {
        "infores:robokop-snpeff": 33660959,
        "infores:gtex": 18543717
      },
      "predicates_by_knowledge_source": {
        "infores:robokop-snpeff": {
          "biolink:is_nearby_variant_of": 29992473,
          "biolink:is_non_coding_variant_of": 3601679,
          "biolink:is_synonymous_variant_of": 26529,
          "biolink:is_missense_variant_of": 25889,
          "biolink:is_splice_site_variant_of": 12398,
          "biolink:is_frameshift_variant_of": 883,
          "biolink:related_to": 695,
          "biolink:is_nonsense_variant_of": 413
        },
        "infores:gtex": {
          "biolink:affects": 18543717
        }
      },
      "qualifiers": {
        "object_aspect_qualifier": 18543717,
        "object_direction_qualifier": 14677764,
        "qualified_predicate": 14677764
      },
      "attributes": {
        "knowledge_level": 52204676,
        "agent_type": 52204676,
        "original_subject": 52204676,
        "original_object": 52204676,
        "snpeff_effect": 33660959,
        "distance_to_feature": 29666716,
        "expressed_in": 18543717,
        "p_value": 18543717,
        "slope": 18543717
      }
    }
  }
}