{
  "@context": {
    "@vocab": "https://schema.org/",
    "biolink": "https://w3id.org/biolink/",
    "orion": "https://github.com/RobokopU24/ORION"
  },
  "@id": "https://robokop.renci.org/graphs/HMDB/5.0.2/",
  "@type": "Dataset",
  "name": "A ROBOKOP Knowledge Graph based on Human Metabolome Database (HMDB)",
  "description": "",
  "url": "https://robokop.renci.org/graphs/HMDB/5.0.2/",
  "version": "5.0.2",
  "dateCreated": "2026-07-22T23:10:26Z",
  "dateModified": "2026-07-22T23:10:26Z",
  "orion:buildVersion": "2519048119c53022",
  "orion:biolinkVersion": "v4.4.2",
  "orion:babelVersion": "2026jul22",
  "hasPart": [
    {
      "@id": "https://robokop.renci.org/graphs/HMDB/5.0.2/",
      "name": "A ROBOKOP Knowledge Graph based on Human Metabolome Database (HMDB)",
      "orion:buildVersion": "2519048119c53022",
      "orion:nodeCount": 94266,
      "orion:edgeCount": 1414166
    }
  ],
  "isBasedOn": [
    {
      "@type": "Dataset",
      "identifier": "infores:hmdb",
      "name": "Human Metabolome Database (HMDB)",
      "description": "The Human Metabolome Database (HMDB) is an openly accessible database containing detailed information about small molecule metabolites found in the human body, with links between chemical data, clinical data, and molecular biology/biochemistry data, including protein sequences (enzymes and transporters).",
      "license": "CC BY-NC 4.0",
      "attribution": "https://hmdb.ca/",
      "url": "https://hmdb.ca/",
      "contentUrl": "https://hmdb.ca/downloads",
      "citation": [
        "https://doi.org/10.1093/nar/gkab1062",
        "Wishart DS, Guo A, Oler E, Wang F, Anjum A, Peters H, Dizon R, Sayeeda Z, Tian S, Lee BL, Berjanskii M, Mah R, Yamamoto M, Jovel J, Torres-Calzada C, Hiebert-Giesbrecht M, Lui VW, Varshavi D, Varshavi D, Allen D, Arndt D, Khetarpal N, Sivakumaran A, Harford K, Sanford S, Yee K, Cao X, Budinski Z, Liigand J, Zhang L, Zheng J, Mandal R, Karu N, Dambrova M, Schi\u00f6th HB, Greiner R, Gautam V. HMDB 5.0: the Human Metabolome Database for 2022. Nucleic Acids Res. 2022 Jan 7;50(D1):D622-D631. doi: 10.1093/nar/gkab1062. PMID: 34986597; PMCID: PMC8728138."
      ],
      "version": "5.0"
    }
  ],
  "schema": {
    "@type": "Dataset",
    "@id": "https://robokop.renci.org/graphs/HMDB/5.0.2/schema.json",
    "name": "RobokopKG Data Schema",
    "description": "JSON-LD Schema describing the contents of the knowledge graph",
    "encodingFormat": "application/ld+json"
  },
  "distribution": [
    {
      "@type": "DataDownload",
      "name": "nodes",
      "encodingFormat": "biolink:KGX",
      "contentUrl": "https://robokop.renci.org/graphs/HMDB/5.0.2/nodes.jsonl.gz"
    },
    {
      "@type": "DataDownload",
      "name": "edges",
      "encodingFormat": "biolink:KGX",
      "contentUrl": "https://robokop.renci.org/graphs/HMDB/5.0.2/edges.jsonl.gz"
    },
    {
      "@type": "DataDownload",
      "name": "graph-metadata",
      "encodingFormat": "application/ld+json",
      "contentUrl": "https://robokop.renci.org/graphs/HMDB/5.0.2/graph-metadata.json"
    },
    {
      "@type": "DataDownload",
      "name": "schema",
      "encodingFormat": "application/ld+json",
      "contentUrl": "https://robokop.renci.org/graphs/HMDB/5.0.2/schema.json"
    }
  ],
  "conformsTo": [
    {
      "@id": "https://w3id.org/biolink/",
      "name": "Biolink Model"
    },
    {
      "@id": "https://github.com/biolink/kgx/blob/master/docs/kgx_format.md",
      "name": "KGX Format"
    }
  ],
  "keywords": [
    "knowledge graph",
    "biomedical",
    "drug discovery",
    "translational research",
    "gene",
    "disease",
    "drug",
    "phenotype",
    "pathway"
  ],
  "creator": [
    {
      "@type": "Organization",
      "@id": "https://ror.org/0130frc33",
      "name": "Renaissance Computing Institute (RENCI)",
      "url": "https://renci.org"
    }
  ],
  "contactPoint": [
    {
      "@type": "ContactPoint",
      "contactType": "developer",
      "url": "https://github.com/RobokopU24/ORION/issues"
    }
  ],
  "funder": [
    {
      "@type": "Organization",
      "@id": "https://ror.org/05wvpxv85",
      "name": "National Center for Advancing Translational Sciences (NCATS)",
      "url": "https://ncats.nih.gov"
    },
    {
      "@type": "Organization",
      "@id": "https://ror.org/00j4k1h63",
      "name": "National Institute of Environmental Health Sciences (NIEHS)",
      "url": "https://www.niehs.nih.gov"
    },
    {
      "@type": "Organization",
      "@id": "https://ror.org/01cwqze88",
      "name": "National Institutes of Health (NIH)",
      "url": "https://www.nih.gov"
    }
  ],
  "license": "https://spdx.org/licenses/MIT"
}