{
  "@context": {
    "@vocab": "https://schema.org/",
    "biolink": "https://w3id.org/biolink/"
  },
  "@type": "Dataset",
  "@id": "https://robokop.renci.org/graphs/LINCS/1.0.1/schema.json",
  "name": "A ROBOKOP Knowledge Graph based on Library of Integrated Network-Based Cellular Signatures Schema",
  "description": "Schema describing the nodes, edges, and attributes in the A ROBOKOP Knowledge Graph based on Library of Integrated Network-Based Cellular Signatures knowledge graph",
  "encodingFormat": "application/ld+json",
  "isPartOf": {
    "@type": "Dataset",
    "@id": "https://robokop.renci.org/graphs/LINCS/1.0.1/",
    "name": "A ROBOKOP Knowledge Graph based on Library of Integrated Network-Based Cellular Signatures"
  },
  "schema": {
    "nodes": [
      {
        "category": [
          "biolink:Gene",
          "biolink:Protein"
        ],
        "count": 4380,
        "id_prefixes": {
          "NCBIGene": 4380
        },
        "attributes": {
          "name": 4380,
          "equivalent_identifiers": 4380,
          "information_content": 4380,
          "description": 4380,
          "taxon": 4380
        }
      },
      {
        "category": [
          "biolink:Gene"
        ],
        "count": 25,
        "id_prefixes": {
          "NCBIGene": 25
        },
        "attributes": {
          "name": 25,
          "equivalent_identifiers": 25,
          "description": 25,
          "taxon": 25,
          "information_content": 17
        }
      },
      {
        "category": [
          "biolink:SmallMolecule"
        ],
        "count": 3388,
        "id_prefixes": {
          "CHEBI": 2758,
          "PUBCHEM.COMPOUND": 395,
          "UNII": 235
        },
        "attributes": {
          "name": 3388,
          "equivalent_identifiers": 3388,
          "information_content": 2758,
          "description": 714
        }
      },
      {
        "category": [
          "biolink:SmallMolecule",
          "biolink:Drug"
        ],
        "count": 1025,
        "id_prefixes": {
          "CHEBI": 1009,
          "UNII": 16
        },
        "attributes": {
          "name": 1025,
          "equivalent_identifiers": 1025,
          "information_content": 1008,
          "description": 785
        }
      },
      {
        "category": [
          "biolink:SmallMolecule",
          "biolink:MolecularMixture"
        ],
        "count": 8,
        "id_prefixes": {
          "CHEBI": 7,
          "UNII": 1
        },
        "attributes": {
          "name": 8,
          "equivalent_identifiers": 8,
          "information_content": 7,
          "description": 5
        }
      },
      {
        "category": [
          "biolink:Drug"
        ],
        "count": 3,
        "id_prefixes": {
          "CHEBI": 3
        },
        "attributes": {
          "name": 3,
          "equivalent_identifiers": 3,
          "information_content": 3,
          "description": 1
        }
      },
      {
        "category": [
          "biolink:MolecularMixture"
        ],
        "count": 11,
        "id_prefixes": {
          "CHEBI": 6,
          "PUBCHEM.COMPOUND": 5
        },
        "attributes": {
          "name": 11,
          "equivalent_identifiers": 11,
          "information_content": 6,
          "description": 2
        }
      }
    ],
    "nodes_summary": {
      "total_count": 8840,
      "id_prefixes": {
        "NCBIGene": 4405,
        "CHEBI": 3783,
        "PUBCHEM.COMPOUND": 400,
        "UNII": 252
      },
      "attributes": {
        "name": 8840,
        "equivalent_identifiers": 8840,
        "information_content": 8179,
        "description": 5912,
        "taxon": 4405
      }
    },
    "edges": [
      {
        "subject_category": [
          "biolink:SmallMolecule"
        ],
        "predicate": "biolink:chemically_similar_to",
        "object_category": [
          "biolink:SmallMolecule"
        ],
        "count": 12073,
        "primary_knowledge_sources": {
          "infores:lincs": 12073
        },
        "qualifiers": {},
        "attributes": {
          "knowledge_level": 12073,
          "agent_type": 12073,
          "original_subject": 12073,
          "original_object": 12073
        },
        "subject_id_prefixes": {
          "CHEBI": 10076,
          "PUBCHEM.COMPOUND": 1349,
          "UNII": 648
        },
        "object_id_prefixes": {
          "CHEBI": 10098,
          "PUBCHEM.COMPOUND": 1375,
          "UNII": 600
        }
      },
      {
        "subject_category": [
          "biolink:SmallMolecule"
        ],
        "predicate": "biolink:chemically_similar_to",
        "object_category": [
          "biolink:SmallMolecule",
          "biolink:Drug"
        ],
        "count": 3137,
        "primary_knowledge_sources": {
          "infores:lincs": 3137
        },
        "qualifiers": {},
        "attributes": {
          "knowledge_level": 3137,
          "agent_type": 3137,
          "original_subject": 3137,
          "original_object": 3137
        },
        "subject_id_prefixes": {
          "CHEBI": 2382,
          "PUBCHEM.COMPOUND": 409,
          "UNII": 346
        },
        "object_id_prefixes": {
          "CHEBI": 3064,
          "UNII": 73
        }
      },
      {
        "subject_category": [
          "biolink:SmallMolecule",
          "biolink:Drug"
        ],
        "predicate": "biolink:chemically_similar_to",
        "object_category": [
          "biolink:SmallMolecule"
        ],
        "count": 2896,
        "primary_knowledge_sources": {
          "infores:lincs": 2896
        },
        "qualifiers": {},
        "attributes": {
          "knowledge_level": 2896,
          "agent_type": 2896,
          "original_subject": 2896,
          "original_object": 2896
        },
        "subject_id_prefixes": {
          "CHEBI": 2853,
          "UNII": 43
        },
        "object_id_prefixes": {
          "CHEBI": 2271,
          "PUBCHEM.COMPOUND": 363,
          "UNII": 262
        }
      },
      {
        "subject_category": [
          "biolink:SmallMolecule"
        ],
        "predicate": "biolink:chemically_similar_to",
        "object_category": [
          "biolink:MolecularMixture"
        ],
        "count": 11,
        "primary_knowledge_sources": {
          "infores:lincs": 11
        },
        "qualifiers": {},
        "attributes": {
          "knowledge_level": 11,
          "agent_type": 11,
          "original_subject": 11,
          "original_object": 11
        },
        "subject_id_prefixes": {
          "CHEBI": 11
        },
        "object_id_prefixes": {
          "PUBCHEM.COMPOUND": 6,
          "CHEBI": 5
        }
      },
      {
        "subject_category": [
          "biolink:SmallMolecule",
          "biolink:Drug"
        ],
        "predicate": "biolink:chemically_similar_to",
        "object_category": [
          "biolink:SmallMolecule",
          "biolink:Drug"
        ],
        "count": 1634,
        "primary_knowledge_sources": {
          "infores:lincs": 1634
        },
        "qualifiers": {},
        "attributes": {
          "knowledge_level": 1634,
          "agent_type": 1634,
          "original_subject": 1634,
          "original_object": 1634
        },
        "subject_id_prefixes": {
          "CHEBI": 1606,
          "UNII": 28
        },
        "object_id_prefixes": {
          "CHEBI": 1603,
          "UNII": 31
        }
      },
      {
        "subject_category": [
          "biolink:MolecularMixture"
        ],
        "predicate": "biolink:chemically_similar_to",
        "object_category": [
          "biolink:SmallMolecule"
        ],
        "count": 33,
        "primary_knowledge_sources": {
          "infores:lincs": 33
        },
        "qualifiers": {},
        "attributes": {
          "knowledge_level": 33,
          "agent_type": 33,
          "original_subject": 33,
          "original_object": 33
        },
        "subject_id_prefixes": {
          "CHEBI": 20,
          "PUBCHEM.COMPOUND": 13
        },
        "object_id_prefixes": {
          "CHEBI": 28,
          "PUBCHEM.COMPOUND": 3,
          "UNII": 2
        }
      },
      {
        "subject_category": [
          "biolink:SmallMolecule",
          "biolink:Drug"
        ],
        "predicate": "biolink:chemically_similar_to",
        "object_category": [
          "biolink:SmallMolecule",
          "biolink:MolecularMixture"
        ],
        "count": 10,
        "primary_knowledge_sources": {
          "infores:lincs": 10
        },
        "qualifiers": {},
        "attributes": {
          "knowledge_level": 10,
          "agent_type": 10,
          "original_subject": 10,
          "original_object": 10
        },
        "subject_id_prefixes": {
          "CHEBI": 10
        },
        "object_id_prefixes": {
          "CHEBI": 6,
          "UNII": 4
        }
      },
      {
        "subject_category": [
          "biolink:MolecularMixture"
        ],
        "predicate": "biolink:chemically_similar_to",
        "object_category": [
          "biolink:SmallMolecule",
          "biolink:Drug"
        ],
        "count": 13,
        "primary_knowledge_sources": {
          "infores:lincs": 13
        },
        "qualifiers": {},
        "attributes": {
          "knowledge_level": 13,
          "agent_type": 13,
          "original_subject": 13,
          "original_object": 13
        },
        "subject_id_prefixes": {
          "PUBCHEM.COMPOUND": 7,
          "CHEBI": 6
        },
        "object_id_prefixes": {
          "CHEBI": 12,
          "UNII": 1
        }
      },
      {
        "subject_category": [
          "biolink:SmallMolecule",
          "biolink:MolecularMixture"
        ],
        "predicate": "biolink:chemically_similar_to",
        "object_category": [
          "biolink:SmallMolecule"
        ],
        "count": 26,
        "primary_knowledge_sources": {
          "infores:lincs": 26
        },
        "qualifiers": {},
        "attributes": {
          "knowledge_level": 26,
          "agent_type": 26,
          "original_subject": 26,
          "original_object": 26
        },
        "subject_id_prefixes": {
          "CHEBI": 25,
          "UNII": 1
        },
        "object_id_prefixes": {
          "CHEBI": 22,
          "PUBCHEM.COMPOUND": 4
        }
      },
      {
        "subject_category": [
          "biolink:SmallMolecule"
        ],
        "predicate": "biolink:chemically_similar_to",
        "object_category": [
          "biolink:Drug"
        ],
        "count": 15,
        "primary_knowledge_sources": {
          "infores:lincs": 15
        },
        "qualifiers": {},
        "attributes": {
          "knowledge_level": 15,
          "agent_type": 15,
          "original_subject": 15,
          "original_object": 15
        },
        "subject_id_prefixes": {
          "CHEBI": 10,
          "PUBCHEM.COMPOUND": 4,
          "UNII": 1
        },
        "object_id_prefixes": {
          "CHEBI": 15
        }
      },
      {
        "subject_category": [
          "biolink:SmallMolecule"
        ],
        "predicate": "biolink:chemically_similar_to",
        "object_category": [
          "biolink:SmallMolecule",
          "biolink:MolecularMixture"
        ],
        "count": 20,
        "primary_knowledge_sources": {
          "infores:lincs": 20
        },
        "qualifiers": {},
        "attributes": {
          "knowledge_level": 20,
          "agent_type": 20,
          "original_subject": 20,
          "original_object": 20
        },
        "subject_id_prefixes": {
          "CHEBI": 17,
          "UNII": 3
        },
        "object_id_prefixes": {
          "UNII": 10,
          "CHEBI": 10
        }
      },
      {
        "subject_category": [
          "biolink:SmallMolecule",
          "biolink:MolecularMixture"
        ],
        "predicate": "biolink:chemically_similar_to",
        "object_category": [
          "biolink:SmallMolecule",
          "biolink:Drug"
        ],
        "count": 10,
        "primary_knowledge_sources": {
          "infores:lincs": 10
        },
        "qualifiers": {},
        "attributes": {
          "knowledge_level": 10,
          "agent_type": 10,
          "original_subject": 10,
          "original_object": 10
        },
        "subject_id_prefixes": {
          "CHEBI": 7,
          "UNII": 3
        },
        "object_id_prefixes": {
          "CHEBI": 10
        }
      },
      {
        "subject_category": [
          "biolink:Drug"
        ],
        "predicate": "biolink:chemically_similar_to",
        "object_category": [
          "biolink:SmallMolecule",
          "biolink:Drug"
        ],
        "count": 5,
        "primary_knowledge_sources": {
          "infores:lincs": 5
        },
        "qualifiers": {},
        "attributes": {
          "knowledge_level": 5,
          "agent_type": 5,
          "original_subject": 5,
          "original_object": 5
        },
        "subject_id_prefixes": {
          "CHEBI": 5
        },
        "object_id_prefixes": {
          "CHEBI": 5
        }
      },
      {
        "subject_category": [
          "biolink:SmallMolecule",
          "biolink:Drug"
        ],
        "predicate": "biolink:chemically_similar_to",
        "object_category": [
          "biolink:MolecularMixture"
        ],
        "count": 9,
        "primary_knowledge_sources": {
          "infores:lincs": 9
        },
        "qualifiers": {},
        "attributes": {
          "knowledge_level": 9,
          "agent_type": 9,
          "original_subject": 9,
          "original_object": 9
        },
        "subject_id_prefixes": {
          "CHEBI": 9
        },
        "object_id_prefixes": {
          "PUBCHEM.COMPOUND": 6,
          "CHEBI": 3
        }
      },
      {
        "subject_category": [
          "biolink:Drug"
        ],
        "predicate": "biolink:chemically_similar_to",
        "object_category": [
          "biolink:SmallMolecule"
        ],
        "count": 10,
        "primary_knowledge_sources": {
          "infores:lincs": 10
        },
        "qualifiers": {},
        "attributes": {
          "knowledge_level": 10,
          "agent_type": 10,
          "original_subject": 10,
          "original_object": 10
        },
        "subject_id_prefixes": {
          "CHEBI": 10
        },
        "object_id_prefixes": {
          "CHEBI": 5,
          "PUBCHEM.COMPOUND": 4,
          "UNII": 1
        }
      },
      {
        "subject_category": [
          "biolink:SmallMolecule",
          "biolink:Drug"
        ],
        "predicate": "biolink:chemically_similar_to",
        "object_category": [
          "biolink:Drug"
        ],
        "count": 2,
        "primary_knowledge_sources": {
          "infores:lincs": 2
        },
        "qualifiers": {},
        "attributes": {
          "knowledge_level": 2,
          "agent_type": 2,
          "original_subject": 2,
          "original_object": 2
        },
        "subject_id_prefixes": {
          "CHEBI": 2
        },
        "object_id_prefixes": {
          "CHEBI": 2
        }
      },
      {
        "subject_category": [
          "biolink:MolecularMixture"
        ],
        "predicate": "biolink:chemically_similar_to",
        "object_category": [
          "biolink:MolecularMixture"
        ],
        "count": 1,
        "primary_knowledge_sources": {
          "infores:lincs": 1
        },
        "qualifiers": {},
        "attributes": {
          "knowledge_level": 1,
          "agent_type": 1,
          "original_subject": 1,
          "original_object": 1
        },
        "subject_id_prefixes": {
          "PUBCHEM.COMPOUND": 1
        },
        "object_id_prefixes": {
          "PUBCHEM.COMPOUND": 1
        }
      },
      {
        "subject_category": [
          "biolink:SmallMolecule"
        ],
        "predicate": "biolink:regulates",
        "object_category": [
          "biolink:Gene",
          "biolink:Protein"
        ],
        "count": 167315,
        "primary_knowledge_sources": {
          "infores:lincs": 167315
        },
        "qualifiers": {
          "object_aspect_qualifier": 167315,
          "object_direction_qualifier": 167315,
          "qualified_predicate": 167315
        },
        "attributes": {
          "knowledge_level": 167315,
          "agent_type": 167315,
          "original_subject": 167315,
          "original_object": 167315
        },
        "subject_id_prefixes": {
          "CHEBI": 136162,
          "PUBCHEM.COMPOUND": 19538,
          "UNII": 11615
        },
        "object_id_prefixes": {
          "NCBIGene": 167315
        }
      },
      {
        "subject_category": [
          "biolink:SmallMolecule",
          "biolink:Drug"
        ],
        "predicate": "biolink:regulates",
        "object_category": [
          "biolink:Gene",
          "biolink:Protein"
        ],
        "count": 50884,
        "primary_knowledge_sources": {
          "infores:lincs": 50884
        },
        "qualifiers": {
          "object_aspect_qualifier": 50884,
          "object_direction_qualifier": 50884,
          "qualified_predicate": 50884
        },
        "attributes": {
          "knowledge_level": 50884,
          "agent_type": 50884,
          "original_subject": 50884,
          "original_object": 50884
        },
        "subject_id_prefixes": {
          "CHEBI": 50094,
          "UNII": 790
        },
        "object_id_prefixes": {
          "NCBIGene": 50884
        }
      },
      {
        "subject_category": [
          "biolink:SmallMolecule",
          "biolink:Drug"
        ],
        "predicate": "biolink:regulates",
        "object_category": [
          "biolink:Gene"
        ],
        "count": 457,
        "primary_knowledge_sources": {
          "infores:lincs": 457
        },
        "qualifiers": {
          "object_aspect_qualifier": 457,
          "object_direction_qualifier": 457,
          "qualified_predicate": 457
        },
        "attributes": {
          "knowledge_level": 457,
          "agent_type": 457,
          "original_subject": 457,
          "original_object": 457
        },
        "subject_id_prefixes": {
          "CHEBI": 448,
          "UNII": 9
        },
        "object_id_prefixes": {
          "NCBIGene": 457
        }
      },
      {
        "subject_category": [
          "biolink:MolecularMixture"
        ],
        "predicate": "biolink:regulates",
        "object_category": [
          "biolink:Gene",
          "biolink:Protein"
        ],
        "count": 543,
        "primary_knowledge_sources": {
          "infores:lincs": 543
        },
        "qualifiers": {
          "object_aspect_qualifier": 543,
          "object_direction_qualifier": 543,
          "qualified_predicate": 543
        },
        "attributes": {
          "knowledge_level": 543,
          "agent_type": 543,
          "original_subject": 543,
          "original_object": 543
        },
        "subject_id_prefixes": {
          "CHEBI": 298,
          "PUBCHEM.COMPOUND": 245
        },
        "object_id_prefixes": {
          "NCBIGene": 543
        }
      },
      {
        "subject_category": [
          "biolink:SmallMolecule"
        ],
        "predicate": "biolink:regulates",
        "object_category": [
          "biolink:Gene"
        ],
        "count": 1611,
        "primary_knowledge_sources": {
          "infores:lincs": 1611
        },
        "qualifiers": {
          "object_aspect_qualifier": 1611,
          "object_direction_qualifier": 1611,
          "qualified_predicate": 1611
        },
        "attributes": {
          "knowledge_level": 1611,
          "agent_type": 1611,
          "original_subject": 1611,
          "original_object": 1611
        },
        "subject_id_prefixes": {
          "CHEBI": 1345,
          "PUBCHEM.COMPOUND": 171,
          "UNII": 95
        },
        "object_id_prefixes": {
          "NCBIGene": 1611
        }
      },
      {
        "subject_category": [
          "biolink:Drug"
        ],
        "predicate": "biolink:regulates",
        "object_category": [
          "biolink:Gene",
          "biolink:Protein"
        ],
        "count": 149,
        "primary_knowledge_sources": {
          "infores:lincs": 149
        },
        "qualifiers": {
          "object_aspect_qualifier": 149,
          "object_direction_qualifier": 149,
          "qualified_predicate": 149
        },
        "attributes": {
          "knowledge_level": 149,
          "agent_type": 149,
          "original_subject": 149,
          "original_object": 149
        },
        "subject_id_prefixes": {
          "CHEBI": 149
        },
        "object_id_prefixes": {
          "NCBIGene": 149
        }
      },
      {
        "subject_category": [
          "biolink:SmallMolecule",
          "biolink:MolecularMixture"
        ],
        "predicate": "biolink:regulates",
        "object_category": [
          "biolink:Gene",
          "biolink:Protein"
        ],
        "count": 396,
        "primary_knowledge_sources": {
          "infores:lincs": 396
        },
        "qualifiers": {
          "object_aspect_qualifier": 396,
          "object_direction_qualifier": 396,
          "qualified_predicate": 396
        },
        "attributes": {
          "knowledge_level": 396,
          "agent_type": 396,
          "original_subject": 396,
          "original_object": 396
        },
        "subject_id_prefixes": {
          "CHEBI": 348,
          "UNII": 48
        },
        "object_id_prefixes": {
          "NCBIGene": 396
        }
      },
      {
        "subject_category": [
          "biolink:MolecularMixture"
        ],
        "predicate": "biolink:regulates",
        "object_category": [
          "biolink:Gene"
        ],
        "count": 5,
        "primary_knowledge_sources": {
          "infores:lincs": 5
        },
        "qualifiers": {
          "object_aspect_qualifier": 5,
          "object_direction_qualifier": 5,
          "qualified_predicate": 5
        },
        "attributes": {
          "knowledge_level": 5,
          "agent_type": 5,
          "original_subject": 5,
          "original_object": 5
        },
        "subject_id_prefixes": {
          "PUBCHEM.COMPOUND": 4,
          "CHEBI": 1
        },
        "object_id_prefixes": {
          "NCBIGene": 5
        }
      },
      {
        "subject_category": [
          "biolink:Drug"
        ],
        "predicate": "biolink:regulates",
        "object_category": [
          "biolink:Gene"
        ],
        "count": 1,
        "primary_knowledge_sources": {
          "infores:lincs": 1
        },
        "qualifiers": {
          "object_aspect_qualifier": 1,
          "object_direction_qualifier": 1,
          "qualified_predicate": 1
        },
        "attributes": {
          "knowledge_level": 1,
          "agent_type": 1,
          "original_subject": 1,
          "original_object": 1
        },
        "subject_id_prefixes": {
          "CHEBI": 1
        },
        "object_id_prefixes": {
          "NCBIGene": 1
        }
      },
      {
        "subject_category": [
          "biolink:SmallMolecule",
          "biolink:MolecularMixture"
        ],
        "predicate": "biolink:regulates",
        "object_category": [
          "biolink:Gene"
        ],
        "count": 4,
        "primary_knowledge_sources": {
          "infores:lincs": 4
        },
        "qualifiers": {
          "object_aspect_qualifier": 4,
          "object_direction_qualifier": 4,
          "qualified_predicate": 4
        },
        "attributes": {
          "knowledge_level": 4,
          "agent_type": 4,
          "original_subject": 4,
          "original_object": 4
        },
        "subject_id_prefixes": {
          "UNII": 2,
          "CHEBI": 2
        },
        "object_id_prefixes": {
          "NCBIGene": 4
        }
      }
    ],
    "edges_summary": {
      "total_count": 241270,
      "predicates": {
        "biolink:regulates": 221365,
        "biolink:chemically_similar_to": 19905
      },
      "primary_knowledge_sources": {
        "infores:lincs": 241270
      },
      "predicates_by_knowledge_source": {
        "infores:lincs": {
          "biolink:regulates": 221365,
          "biolink:chemically_similar_to": 19905
        }
      },
      "qualifiers": {
        "object_aspect_qualifier": 221365,
        "object_direction_qualifier": 221365,
        "qualified_predicate": 221365
      },
      "attributes": {
        "knowledge_level": 241270,
        "agent_type": 241270,
        "original_subject": 241270,
        "original_object": 241270
      }
    }
  }
}