{ "graph_id": "PHAROS_Automat", "graph_name": "Pharos", "graph_description": "Pharos is the openly accessible user interface to the Illuminating the Druggable Genome (IDG) program\u2019s Knowledge Management Center (KMC), which aims to develop a comprehensive, integrated knowledge-base for the Druggable Genome (DG) to illuminate the uncharacterized and/or poorly annotated portion of the DG, focusing on three of the most common drug-targeted protein families: G-protein-coupled receptors; ion channels; and kinases.", "graph_url": "https://pharos.nih.gov/", "graph_version": "a6022ac51591a48b", "sources": [ { "source_id": "PHAROS", "source_version": "v6_13_4", "parsing_version": "1.9", "supplementation_version": "1.1", "normalization_scheme": { "node_normalization_version": "2025sep1", "edge_normalization_version": "v4.3.6", "normalization_code_version": "1.4", "conflation": false, "strict": true }, "release_version": "8da27045e7034547", "merge_strategy": null, "edge_merging_attributes": null, "edge_id_addition": false, "normalization_version": "2025sep1_v4.3.6_1.4_strict", "infores:pharos": { "id": "infores:pharos", "name": "Pharos", "description": "Pharos is the openly accessible user interface to the Illuminating the Druggable Genome (IDG) program's Knowledge Management Center (KMC), which aims to develop a comprehensive, integrated knowledge-base for the Druggable Genome (DG) to illuminate the uncharacterized and/or poorly annotated portion of the DG, focusing on three of the most commonly drug-targeted protein families: G-protein-coupled receptors; ion channels; and kinases.", "url": "https://pharos.nih.gov/", "attribution": "", "citation": "https://doi.org/10.1093/nar/gkac1033", "license": "Data accessed from Pharos and TCRD is publicly available from the primary sources listed above. Please respect their individual licenses regarding proper use and redistribution.", "contentUrl": "https://pharos.nih.gov/", "fullCitation": "Sheils, T., Mathias, S. et al, \"TCRD and Pharos 2021: mining the human proteome for disease biology\", Nucl. Acids Res., 2021. DOI: 10.1093/nar/gkaa993", "isBasedOn": { "infores:ctd": { "id": "infores:ctd", "name": "Comparative Toxicogenomics Database", "url": "https://ctdbase.org/", "license": "Custom CTD License", "licenseUrl": "https://ctdbase.org/about/legal.jsp" }, "infores:diseases": { "id": "infores:diseases", "name": "DISEASES", "url": "https://diseases.jensenlab.org/", "license": "CC BY 4.0", "licenseUrl": "https://diseases.jensenlab.org/About" }, "infores:disgenet": { "id": "infores:disgenet", "name": "DisGeNET", "url": "https://www.disgenet.org/", "license": "CC BY 4.0", "licenseUrl": "https://disgenet.com/Legal" }, "infores:drugcentral": { "id": "infores:drugcentral", "name": "DrugCentral", "url": "https://drugcentral.org/", "license": "CC BY-SA 4.0", "licenseUrl": "https://drugcentral.org/privacy" }, "infores:eram": { "id": "infores:eram", "name": "eRAM: encyclopedia of rare disease annotations for precision medicine", "url": "http://www.youreram.cn/", "license": "Custom eRAM License", "licenseUrl": "http://119.3.41.228/eram/download.php" }, "infores:monarchinitiative": { "id": "infores:monarchinitiative", "name": "Monarch Initiative", "url": "https://monarchinitiative.org/", "license": "BSD-3-Clause", "licenseUrl": "https://monarchinitiative.org/kg/terms" }, "infores:uniprot": { "id": "infores:uniprot", "name": "UniProt Knowledgebase", "url": "https://www.uniprot.org/", "license": "CC BY 4.0", "licenseUrl": "https://www.uniprot.org/help/license" } } }, "normalized_nodes.jsonl": { "nodes": 299254 }, "normalized_edges.jsonl": { "edges": 667014 } }, { "source_id": "OntologicalHierarchy", "source_version": "2025-11-02", "parsing_version": "1.5", "supplementation_version": "1.1", "normalization_scheme": { "node_normalization_version": "2025sep1", "edge_normalization_version": "v4.3.6", "normalization_code_version": "1.4", "conflation": false, "strict": true }, "release_version": "e855b13b685fa645", "merge_strategy": "connected_edge_subset", "edge_merging_attributes": null, "edge_id_addition": false, "normalization_version": "2025sep1_v4.3.6_1.4_strict", "infores:ubergraph": { "id": "infores:ubergraph", "name": "Ubergraph Subclass Relationships", "description": "Subclass relationships from the redundant version of Ubergraph.", "url": "https://github.com/INCATools/ubergraph", "attribution": "https://github.com/INCATools/ubergraph", "citation": "https://doi.org/10.5281/zenodo.7249759", "license": "https://raw.githubusercontent.com/INCATools/ubergraph/master/LICENSE.txt", "contentUrl": "https://github.com/INCATools/ubergraph", "fullCitation": "Balhoff, J. P., Bayindir, U., Caron, A. R., Matentzoglu, N., Osumi-Sutherland, D., & Mungall, C. J. (2022, September 28). Ubergraph: integrating OBO ontologies into a unified semantic graph. ICBO 2022: International Conference on Biomedical Ontology (ICBO), Ann Arbor, Michigan, USA." }, "normalized_edges.jsonl": { "edges": 568806 }, "normalized_nodes.jsonl": { "nodes": 42332 } } ], "subgraphs": [], "build_status": "stable", "build_time": "2026-02-05T13:05:42", "build_error": null, "final_node_count": 341586, "final_edge_count": 1052388, "merged_nodes": 0, "merged_edges": 0, "unmerged_edge_count": 0, "qc_results": { "pass": true, "warnings": {}, "errors": {}, "primary_knowledge_sources": [ "infores:ctd", "infores:diseases", "infores:disgenet", "infores:drugcentral", "infores:eram", "infores:monarchinitiative", "infores:pharos", "infores:ubergraph", "infores:uniprot" ], "aggregator_knowledge_sources": [ "infores:pharos" ], "node_curie_prefixes": { "PUBCHEM.COMPOUND": 259878, "MONDO": 22660, "UMLS": 13701, "HP": 11391, "NCBIGene": 10398, "CHEMBL.COMPOUND": 9909, "CHEBI": 9002, "UNII": 3223, "NCIT": 881, "EFO": 181, "OMIM": 128, "GTOPDB": 89, "DOID": 64, "orphanet": 41, "HGNC": 15, "GO": 13, "MESH": 10, "PR": 1, "CL": 1 }, "node_types": [ { "type": [ "biolink:SmallMolecule" ], "count": 259276 }, { "type": [ "biolink:Disease" ], "count": 36674 }, { "type": [ "biolink:PhenotypicFeature" ], "count": 12346 }, { "type": [ "biolink:ChemicalEntity" ], "count": 11923 }, { "type": [ "biolink:MolecularMixture" ], "count": 10900 }, { "type": [ "biolink:Gene" ], "count": 10413 }, { "type": [ "biolink:Cell" ], "count": 18 }, { "type": [ "biolink:BiologicalProcess" ], "count": 17 }, { "type": [ "biolink:BiologicalEntity" ], "count": 10 }, { "type": [ "biolink:Behavior" ], "count": 4 }, { "type": [ "biolink:ChemicalMixture" ], "count": 2 }, { "type": [ "biolink:AnatomicalEntity" ], "count": 1 }, { "type": [ "biolink:ClinicalAttribute" ], "count": 1 }, { "type": [ "biolink:Protein" ], "count": 1 } ], "node_properties": [ "category", "equivalent_identifiers", "id", "information_content", "name" ], "predicate_totals": { "biolink:subclass_of": 502982, "biolink:affects": 385197, "biolink:genetically_associated_with": 145785, "biolink:directly_physically_interacts_with": 11843, "biolink:target_for": 3471, "biolink:related_to": 3110 }, "edges_with_publications": { "biolink:affects": 346521, "biolink:directly_physically_interacts_with": 11194, "biolink:related_to": 3074 }, "edge_properties": [ "affinity", "affinity_parameter", "agent_type", "aggregator_knowledge_source", "knowledge_level", "object", "object_aspect_qualifier", "object_direction_qualifier", "original_object", "original_subject", "predicate", "primary_knowledge_source", "publications", "qualified_predicate", "score", "subject" ], "s-p-o_types": [ { "subject_type": [ "biolink:Disease" ], "predicate": "biolink:subclass_of", "object_type": [ "biolink:Disease" ], "count": 306929 }, { "subject_type": [ "biolink:SmallMolecule" ], "predicate": "biolink:subclass_of", "object_type": [ "biolink:ChemicalEntity" ], "count": 143187 }, { "subject_type": [ "biolink:Disease" ], "predicate": "biolink:subclass_of", "object_type": [ "biolink:PhenotypicFeature" ], "count": 12485 }, { "subject_type": [ "biolink:SmallMolecule" ], "predicate": "biolink:affects", "object_type": [ "biolink:Gene" ], "count": 356077 }, { "subject_type": [ "biolink:Gene" ], "predicate": "biolink:genetically_associated_with", "object_type": [ "biolink:Disease" ], "count": 134742 }, { "subject_type": [ "biolink:ChemicalEntity" ], "predicate": "biolink:affects", "object_type": [ "biolink:Gene" ], "count": 13544 }, { "subject_type": [ "biolink:PhenotypicFeature" ], "predicate": "biolink:subclass_of", "object_type": [ "biolink:PhenotypicFeature" ], "count": 7851 }, { "subject_type": [ "biolink:Gene" ], "predicate": "biolink:genetically_associated_with", "object_type": [ "biolink:PhenotypicFeature" ], "count": 9703 }, { "subject_type": [ "biolink:Gene" ], "predicate": "biolink:target_for", "object_type": [ "biolink:Disease" ], "count": 3471 }, { "subject_type": [ "biolink:PhenotypicFeature" ], "predicate": "biolink:subclass_of", "object_type": [ "biolink:Disease" ], "count": 19210 }, { "subject_type": [ "biolink:MolecularMixture" ], "predicate": "biolink:affects", "object_type": [ "biolink:Gene" ], "count": 15576 }, { "subject_type": [ "biolink:SmallMolecule" ], "predicate": "biolink:directly_physically_interacts_with", "object_type": [ "biolink:Gene" ], "count": 10955 }, { "subject_type": [ "biolink:SmallMolecule" ], "predicate": "biolink:subclass_of", "object_type": [ "biolink:SmallMolecule" ], "count": 9029 }, { "subject_type": [ "biolink:Gene" ], "predicate": "biolink:genetically_associated_with", "object_type": [ "biolink:BiologicalEntity" ], "count": 1298 }, { "subject_type": [ "biolink:MolecularMixture" ], "predicate": "biolink:subclass_of", "object_type": [ "biolink:ChemicalEntity" ], "count": 2748 }, { "subject_type": [ "biolink:SmallMolecule" ], "predicate": "biolink:related_to", "object_type": [ "biolink:Gene" ], "count": 3075 }, { "subject_type": [ "biolink:MolecularMixture" ], "predicate": "biolink:directly_physically_interacts_with", "object_type": [ "biolink:Gene" ], "count": 451 }, { "subject_type": [ "biolink:BiologicalProcess" ], "predicate": "biolink:subclass_of", "object_type": [ "biolink:BiologicalProcess" ], "count": 12 }, { "subject_type": [ "biolink:ChemicalEntity" ], "predicate": "biolink:directly_physically_interacts_with", "object_type": [ "biolink:Gene" ], "count": 437 }, { "subject_type": [ "biolink:SmallMolecule" ], "predicate": "biolink:subclass_of", "object_type": [ "biolink:MolecularMixture" ], "count": 181 }, { "subject_type": [ "biolink:ChemicalEntity" ], "predicate": "biolink:subclass_of", "object_type": [ "biolink:ChemicalEntity" ], "count": 1051 }, { "subject_type": [ "biolink:MolecularMixture" ], "predicate": "biolink:subclass_of", "object_type": [ "biolink:SmallMolecule" ], "count": 116 }, { "subject_type": [ "biolink:MolecularMixture" ], "predicate": "biolink:related_to", "object_type": [ "biolink:Gene" ], "count": 16 }, { "subject_type": [ "biolink:Disease" ], "predicate": "biolink:subclass_of", "object_type": [ "biolink:Cell" ], "count": 15 }, { "subject_type": [ "biolink:ChemicalEntity" ], "predicate": "biolink:subclass_of", "object_type": [ "biolink:SmallMolecule" ], "count": 81 }, { "subject_type": [ "biolink:MolecularMixture" ], "predicate": "biolink:subclass_of", "object_type": [ "biolink:MolecularMixture" ], "count": 15 }, { "subject_type": [ "biolink:MolecularMixture" ], "predicate": "biolink:subclass_of", "object_type": [ "biolink:ChemicalMixture" ], "count": 4 }, { "subject_type": [ "biolink:ChemicalEntity" ], "predicate": "biolink:related_to", "object_type": [ "biolink:Gene" ], "count": 19 }, { "subject_type": [ "biolink:SmallMolecule" ], "predicate": "biolink:subclass_of", "object_type": [ "biolink:ChemicalMixture" ], "count": 60 }, { "subject_type": [ "biolink:Gene" ], "predicate": "biolink:genetically_associated_with", "object_type": [ "biolink:Behavior" ], "count": 6 }, { "subject_type": [ "biolink:Cell" ], "predicate": "biolink:subclass_of", "object_type": [ "biolink:Disease" ], "count": 3 }, { "subject_type": [ "biolink:Gene" ], "predicate": "biolink:genetically_associated_with", "object_type": [ "biolink:BiologicalProcess" ], "count": 17 }, { "subject_type": [ "biolink:Gene" ], "predicate": "biolink:genetically_associated_with", "object_type": [ "biolink:Gene" ], "count": 9 }, { "subject_type": [ "biolink:Gene" ], "predicate": "biolink:genetically_associated_with", "object_type": [ "biolink:ClinicalAttribute" ], "count": 2 }, { "subject_type": [ "biolink:Gene" ], "predicate": "biolink:genetically_associated_with", "object_type": [ "biolink:AnatomicalEntity" ], "count": 8 }, { "subject_type": [ "biolink:ChemicalEntity" ], "predicate": "biolink:subclass_of", "object_type": [ "biolink:ChemicalMixture" ], "count": 1 }, { "subject_type": [ "biolink:ChemicalEntity" ], "predicate": "biolink:subclass_of", "object_type": [ "biolink:MolecularMixture" ], "count": 3 }, { "subject_type": [ "biolink:SmallMolecule" ], "predicate": "biolink:subclass_of", "object_type": [ "biolink:Protein" ], "count": 1 } ], "source_breakdown": [ { "aggregator": [ null ], "breakdown": { "infores:ubergraph": { "node_count": 56463, "edge_count": 502982, "subject_prefixes": { "MONDO": 213745, "CHEBI": 156477, "UMLS": 102659, "HP": 26092, "NCIT": 2644, "EFO": 892, "DOID": 245, "OMIM": 216, "GO": 12 }, "subject_types": [ { "type": [ "biolink:Disease" ], "count": 319429 }, { "type": [ "biolink:SmallMolecule" ], "count": 152458 }, { "type": [ "biolink:PhenotypicFeature" ], "count": 27061 }, { "type": [ "biolink:MolecularMixture" ], "count": 2883 }, { "type": [ "biolink:ChemicalEntity" ], "count": 1136 }, { "type": [ "biolink:BiologicalProcess" ], "count": 12 }, { "type": [ "biolink:Cell" ], "count": 3 } ], "predicates": { "biolink:subclass_of": 502982 }, "object_prefixes": { "MONDO": 305091, "CHEBI": 156476, "UMLS": 20774, "HP": 17403, "NCIT": 2339, "EFO": 858, "DOID": 27, "GO": 12, "CL": 1, "PR": 1 }, "object_types": [ { "type": [ "biolink:Disease" ], "count": 326142 }, { "type": [ "biolink:ChemicalEntity" ], "count": 146986 }, { "type": [ "biolink:PhenotypicFeature" ], "count": 20336 }, { "type": [ "biolink:SmallMolecule" ], "count": 9226 }, { "type": [ "biolink:MolecularMixture" ], "count": 199 }, { "type": [ "biolink:ChemicalMixture" ], "count": 65 }, { "type": [ "biolink:Cell" ], "count": 15 }, { "type": [ "biolink:BiologicalProcess" ], "count": 12 }, { "type": [ "biolink:Protein" ], "count": 1 } ], "s-p-o_types": [ { "subject_type": [ "biolink:Disease" ], "predicate": "biolink:subclass_of", "object_type": [ "biolink:Disease" ], "count": 306929 }, { "subject_type": [ "biolink:SmallMolecule" ], "predicate": "biolink:subclass_of", "object_type": [ "biolink:ChemicalEntity" ], "count": 143187 }, { "subject_type": [ "biolink:Disease" ], "predicate": "biolink:subclass_of", "object_type": [ "biolink:PhenotypicFeature" ], "count": 12485 }, { "subject_type": [ "biolink:PhenotypicFeature" ], "predicate": "biolink:subclass_of", "object_type": [ "biolink:PhenotypicFeature" ], "count": 7851 }, { "subject_type": [ "biolink:PhenotypicFeature" ], "predicate": "biolink:subclass_of", "object_type": [ "biolink:Disease" ], "count": 19210 }, { "subject_type": [ "biolink:SmallMolecule" ], "predicate": "biolink:subclass_of", "object_type": [ "biolink:SmallMolecule" ], "count": 9029 }, { "subject_type": [ "biolink:MolecularMixture" ], "predicate": "biolink:subclass_of", "object_type": [ "biolink:ChemicalEntity" ], "count": 2748 }, { "subject_type": [ "biolink:BiologicalProcess" ], "predicate": "biolink:subclass_of", "object_type": [ "biolink:BiologicalProcess" ], "count": 12 }, { "subject_type": [ "biolink:SmallMolecule" ], "predicate": "biolink:subclass_of", "object_type": [ "biolink:MolecularMixture" ], "count": 181 }, { "subject_type": [ "biolink:ChemicalEntity" ], "predicate": "biolink:subclass_of", "object_type": [ "biolink:ChemicalEntity" ], "count": 1051 }, { "subject_type": [ "biolink:MolecularMixture" ], "predicate": "biolink:subclass_of", "object_type": [ "biolink:SmallMolecule" ], "count": 116 }, { "subject_type": [ "biolink:Disease" ], "predicate": "biolink:subclass_of", "object_type": [ "biolink:Cell" ], "count": 15 }, { "subject_type": [ "biolink:ChemicalEntity" ], "predicate": "biolink:subclass_of", "object_type": [ "biolink:SmallMolecule" ], "count": 81 }, { "subject_type": [ "biolink:MolecularMixture" ], "predicate": "biolink:subclass_of", "object_type": [ "biolink:MolecularMixture" ], "count": 15 }, { "subject_type": [ "biolink:MolecularMixture" ], "predicate": "biolink:subclass_of", "object_type": [ "biolink:ChemicalMixture" ], "count": 4 }, { "subject_type": [ "biolink:SmallMolecule" ], "predicate": "biolink:subclass_of", "object_type": [ "biolink:ChemicalMixture" ], "count": 60 }, { "subject_type": [ "biolink:Cell" ], "predicate": "biolink:subclass_of", "object_type": [ "biolink:Disease" ], "count": 3 }, { "subject_type": [ "biolink:ChemicalEntity" ], "predicate": "biolink:subclass_of", "object_type": [ "biolink:ChemicalMixture" ], "count": 1 }, { "subject_type": [ "biolink:ChemicalEntity" ], "predicate": "biolink:subclass_of", "object_type": [ "biolink:MolecularMixture" ], "count": 3 }, { "subject_type": [ "biolink:SmallMolecule" ], "predicate": "biolink:subclass_of", "object_type": [ "biolink:Protein" ], "count": 1 } ] }, "infores:pharos": { "node_count": 280910, "edge_count": 400150, "subject_prefixes": { "PUBCHEM.COMPOUND": 362450, "CHEBI": 16944, "CHEMBL.COMPOUND": 13671, "UNII": 6872, "GTOPDB": 213 }, "subject_types": [ { "type": [ "biolink:SmallMolecule" ], "count": 370107 }, { "type": [ "biolink:MolecularMixture" ], "count": 16043 }, { "type": [ "biolink:ChemicalEntity" ], "count": 14000 } ], "predicates": { "biolink:affects": 385197, "biolink:directly_physically_interacts_with": 11843, "biolink:related_to": 3110 }, "object_prefixes": { "NCBIGene": 400120, "HGNC": 30 }, "object_types": [ { "type": [ "biolink:Gene" ], "count": 400150 } ], "s-p-o_types": [ { "subject_type": [ "biolink:SmallMolecule" ], "predicate": "biolink:affects", "object_type": [ "biolink:Gene" ], "count": 356077 }, { "subject_type": [ "biolink:ChemicalEntity" ], "predicate": "biolink:affects", "object_type": [ "biolink:Gene" ], "count": 13544 }, { "subject_type": [ "biolink:MolecularMixture" ], "predicate": "biolink:affects", "object_type": [ "biolink:Gene" ], "count": 15576 }, { "subject_type": [ "biolink:SmallMolecule" ], "predicate": "biolink:directly_physically_interacts_with", "object_type": [ "biolink:Gene" ], "count": 10955 }, { "subject_type": [ "biolink:SmallMolecule" ], "predicate": "biolink:related_to", "object_type": [ "biolink:Gene" ], "count": 3075 }, { "subject_type": [ "biolink:MolecularMixture" ], "predicate": "biolink:directly_physically_interacts_with", "object_type": [ "biolink:Gene" ], "count": 451 }, { "subject_type": [ "biolink:ChemicalEntity" ], "predicate": "biolink:directly_physically_interacts_with", "object_type": [ "biolink:Gene" ], "count": 437 }, { "subject_type": [ "biolink:MolecularMixture" ], "predicate": "biolink:related_to", "object_type": [ "biolink:Gene" ], "count": 16 }, { "subject_type": [ "biolink:ChemicalEntity" ], "predicate": "biolink:related_to", "object_type": [ "biolink:Gene" ], "count": 19 } ] } } }, { "aggregator": [ "infores:pharos" ], "breakdown": { "infores:ctd": { "node_count": 13383, "edge_count": 33039, "subject_prefixes": { "NCBIGene": 33028, "HGNC": 11 }, "subject_types": [ { "type": [ "biolink:Gene" ], "count": 33039 } ], "predicates": { "biolink:genetically_associated_with": 33039 }, "object_prefixes": { "MONDO": 27843, "UMLS": 2033, "HP": 1301, "MESH": 1079, "EFO": 347, "DOID": 200, "NCIT": 166, "OMIM": 67, "NCBIGene": 3 }, "object_types": [ { "type": [ "biolink:Disease" ], "count": 31460 }, { "type": [ "biolink:PhenotypicFeature" ], "count": 1576 }, { "type": [ "biolink:Gene" ], "count": 3 } ], "s-p-o_types": [ { "subject_type": [ "biolink:Gene" ], "predicate": "biolink:genetically_associated_with", "object_type": [ "biolink:Disease" ], "count": 31460 }, { "subject_type": [ "biolink:Gene" ], "predicate": "biolink:genetically_associated_with", "object_type": [ "biolink:PhenotypicFeature" ], "count": 1576 }, { "subject_type": [ "biolink:Gene" ], "predicate": "biolink:genetically_associated_with", "object_type": [ "biolink:Gene" ], "count": 3 } ] }, "infores:disgenet": { "node_count": 17879, "edge_count": 73346, "subject_prefixes": { "NCBIGene": 73312, "HGNC": 34 }, "subject_types": [ { "type": [ "biolink:Gene" ], "count": 73346 } ], "predicates": { "biolink:genetically_associated_with": 73346 }, "object_prefixes": { "MONDO": 49493, "UMLS": 17216, "HP": 5302, "NCIT": 607, "EFO": 344, "DOID": 258, "OMIM": 125, "GO": 1 }, "object_types": [ { "type": [ "biolink:Disease" ], "count": 63925 }, { "type": [ "biolink:PhenotypicFeature" ], "count": 8090 }, { "type": [ "biolink:BiologicalEntity" ], "count": 1298 }, { "type": [ "biolink:BiologicalProcess" ], "count": 17 }, { "type": [ "biolink:AnatomicalEntity" ], "count": 8 }, { "type": [ "biolink:Behavior" ], "count": 6 }, { "type": [ "biolink:ClinicalAttribute" ], "count": 2 } ], "s-p-o_types": [ { "subject_type": [ "biolink:Gene" ], "predicate": "biolink:genetically_associated_with", "object_type": [ "biolink:Disease" ], "count": 63925 }, { "subject_type": [ "biolink:Gene" ], "predicate": "biolink:genetically_associated_with", "object_type": [ "biolink:PhenotypicFeature" ], "count": 8090 }, { "subject_type": [ "biolink:Gene" ], "predicate": "biolink:genetically_associated_with", "object_type": [ "biolink:BiologicalEntity" ], "count": 1298 }, { "subject_type": [ "biolink:Gene" ], "predicate": "biolink:genetically_associated_with", "object_type": [ "biolink:Behavior" ], "count": 6 }, { "subject_type": [ "biolink:Gene" ], "predicate": "biolink:genetically_associated_with", "object_type": [ "biolink:BiologicalProcess" ], "count": 17 }, { "subject_type": [ "biolink:Gene" ], "predicate": "biolink:genetically_associated_with", "object_type": [ "biolink:ClinicalAttribute" ], "count": 2 }, { "subject_type": [ "biolink:Gene" ], "predicate": "biolink:genetically_associated_with", "object_type": [ "biolink:AnatomicalEntity" ], "count": 8 } ] }, "infores:diseases": { "node_count": 6414, "edge_count": 12344, "subject_prefixes": { "NCBIGene": 12339, "HGNC": 5 }, "subject_types": [ { "type": [ "biolink:Gene" ], "count": 12344 } ], "predicates": { "biolink:genetically_associated_with": 12344 }, "object_prefixes": { "MONDO": 12237, "DOID": 107 }, "object_types": [ { "type": [ "biolink:Disease" ], "count": 12344 } ], "s-p-o_types": [ { "subject_type": [ "biolink:Gene" ], "predicate": "biolink:genetically_associated_with", "object_type": [ "biolink:Disease" ], "count": 12344 } ] }, "infores:monarchinitiative": { "node_count": 8719, "edge_count": 8681, "subject_prefixes": { "NCBIGene": 8675, "HGNC": 6 }, "subject_types": [ { "type": [ "biolink:Gene" ], "count": 8681 } ], "predicates": { "biolink:genetically_associated_with": 8681 }, "object_prefixes": { "MONDO": 8378, "OMIM": 94, "orphanet": 88, "DOID": 64, "HP": 37, "UMLS": 10, "EFO": 8, "NCBIGene": 2 }, "object_types": [ { "type": [ "biolink:Disease" ], "count": 8642 }, { "type": [ "biolink:PhenotypicFeature" ], "count": 37 }, { "type": [ "biolink:Gene" ], "count": 2 } ], "s-p-o_types": [ { "subject_type": [ "biolink:Gene" ], "predicate": "biolink:genetically_associated_with", "object_type": [ "biolink:Disease" ], "count": 8642 }, { "subject_type": [ "biolink:Gene" ], "predicate": "biolink:genetically_associated_with", "object_type": [ "biolink:PhenotypicFeature" ], "count": 37 }, { "subject_type": [ "biolink:Gene" ], "predicate": "biolink:genetically_associated_with", "object_type": [ "biolink:Gene" ], "count": 2 } ] }, "infores:drugcentral": { "node_count": 1397, "edge_count": 3471, "subject_prefixes": { "NCBIGene": 3470, "HGNC": 1 }, "subject_types": [ { "type": [ "biolink:Gene" ], "count": 3471 } ], "predicates": { "biolink:target_for": 3471 }, "object_prefixes": { "MONDO": 3441, "DOID": 30 }, "object_types": [ { "type": [ "biolink:Disease" ], "count": 3471 } ], "s-p-o_types": [ { "subject_type": [ "biolink:Gene" ], "predicate": "biolink:target_for", "object_type": [ "biolink:Disease" ], "count": 3471 } ] }, "infores:eram": { "node_count": 6279, "edge_count": 12875, "subject_prefixes": { "NCBIGene": 12862, "HGNC": 13 }, "subject_types": [ { "type": [ "biolink:Gene" ], "count": 12875 } ], "predicates": { "biolink:genetically_associated_with": 12875 }, "object_prefixes": { "MONDO": 12774, "DOID": 101 }, "object_types": [ { "type": [ "biolink:Disease" ], "count": 12875 } ], "s-p-o_types": [ { "subject_type": [ "biolink:Gene" ], "predicate": "biolink:genetically_associated_with", "object_type": [ "biolink:Disease" ], "count": 12875 } ] }, "infores:uniprot": { "node_count": 8667, "edge_count": 5500, "subject_prefixes": { "NCBIGene": 5496, "HGNC": 4 }, "subject_types": [ { "type": [ "biolink:Gene" ], "count": 5500 } ], "predicates": { "biolink:genetically_associated_with": 5500 }, "object_prefixes": { "MONDO": 5377, "OMIM": 94, "DOID": 25, "NCBIGene": 4 }, "object_types": [ { "type": [ "biolink:Disease" ], "count": 5496 }, { "type": [ "biolink:Gene" ], "count": 4 } ], "s-p-o_types": [ { "subject_type": [ "biolink:Gene" ], "predicate": "biolink:genetically_associated_with", "object_type": [ "biolink:Disease" ], "count": 5496 }, { "subject_type": [ "biolink:Gene" ], "predicate": "biolink:genetically_associated_with", "object_type": [ "biolink:Gene" ], "count": 4 } ] } } } ], "predicates_by_knowledge_source": { "infores:ubergraph": { "biolink:subclass_of": 502982 }, "infores:pharos": { "biolink:affects": 385197, "biolink:directly_physically_interacts_with": 11843, "biolink:related_to": 3110 }, "infores:ctd": { "biolink:genetically_associated_with": 33039 }, "infores:disgenet": { "biolink:genetically_associated_with": 73346 }, "infores:diseases": { "biolink:genetically_associated_with": 12344 }, "infores:monarchinitiative": { "biolink:genetically_associated_with": 8681 }, "infores:eram": { "biolink:genetically_associated_with": 12875 }, "infores:uniprot": { "biolink:genetically_associated_with": 5500 }, "infores:drugcentral": { "biolink:target_for": 3471 } } }, "memgraph_dump": "https://stars.renci.org/var/plater/graphs/PHAROS_Automat/a6022ac51591a48b/memgraph.cypher", "neo4j_dump": "https://stars.renci.org/var/plater/graphs/PHAROS_Automat/a6022ac51591a48b/neo4j.dump" }