{
    "graph_id": "ViralProteome_Automat",
    "graph_name": "Viral Proteome",
    "graph_description": "The Gene Ontology (GO) Consortium\u2019s Viral Proteome resource provides open access to curated assignment of GO terms to proteins and proteome relationships derived from the UniProt KnowledgeBase for all NCBI taxa classified as viruses.",
    "graph_url": "https://www.ebi.ac.uk/GOA/proteomes",
    "graph_version": "be3a42b4b9d961a6",
    "sources": [
        {
            "source_id": "ViralProteome",
            "source_version": "12_5_2025",
            "parsing_version": "1.2",
            "supplementation_version": "1.1",
            "normalization_scheme": {
                "node_normalization_version": "2025sep1",
                "edge_normalization_version": "v4.3.6",
                "normalization_code_version": "1.4",
                "conflation": false,
                "strict": true
            },
            "release_version": "60f4b61910dd9a1f",
            "merge_strategy": null,
            "edge_merging_attributes": null,
            "edge_id_addition": false,
            "normalization_version": "2025sep1_v4.3.6_1.4_strict",
            "infores:goa": {
                "id": "infores:goa",
                "name": "Gene Ontology Annotation - Viral Proteome",
                "description": "The Gene Ontology (GO) Consortium\u2019s Viral Proteome resource provides open access to curated assignment of GO terms to proteins and proteome relationships derived from the UniProt KnowledgeBase for all NCBI Taxa considered viruses.",
                "url": "https://www.ebi.ac.uk/GOA/proteomes",
                "attribution": "https://www.ebi.ac.uk/about/terms-of-use",
                "citation": "",
                "license": "https://www.ebi.ac.uk/about/terms-of-use",
                "contentUrl": "https://www.ebi.ac.uk/GOA/proteomes",
                "fullCitation": ""
            },
            "normalized_nodes.jsonl": {
                "nodes": 40503
            },
            "normalized_edges.jsonl": {
                "edges": 281007
            }
        },
        {
            "source_id": "OntologicalHierarchy",
            "source_version": "2025-11-02",
            "parsing_version": "1.5",
            "supplementation_version": "1.1",
            "normalization_scheme": {
                "node_normalization_version": "2025sep1",
                "edge_normalization_version": "v4.3.6",
                "normalization_code_version": "1.4",
                "conflation": false,
                "strict": true
            },
            "release_version": "e855b13b685fa645",
            "merge_strategy": "connected_edge_subset",
            "edge_merging_attributes": null,
            "edge_id_addition": false,
            "normalization_version": "2025sep1_v4.3.6_1.4_strict",
            "infores:ubergraph": {
                "id": "infores:ubergraph",
                "name": "Ubergraph Subclass Relationships",
                "description": "Subclass relationships from the redundant version of Ubergraph.",
                "url": "https://github.com/INCATools/ubergraph",
                "attribution": "https://github.com/INCATools/ubergraph",
                "citation": "https://doi.org/10.5281/zenodo.7249759",
                "license": "https://raw.githubusercontent.com/INCATools/ubergraph/master/LICENSE.txt",
                "contentUrl": "https://github.com/INCATools/ubergraph",
                "fullCitation": "Balhoff, J. P., Bayindir, U., Caron, A. R., Matentzoglu, N., Osumi-Sutherland, D., & Mungall, C. J. (2022, September 28). Ubergraph: integrating OBO ontologies into a unified semantic graph. ICBO 2022: International Conference on Biomedical Ontology (ICBO), Ann Arbor, Michigan, USA."
            },
            "normalized_edges.jsonl": {
                "edges": 86356
            },
            "normalized_nodes.jsonl": {
                "nodes": 25044
            }
        }
    ],
    "subgraphs": [],
    "build_status": "stable",
    "build_time": "2026-02-06T00:31:04",
    "build_error": null,
    "final_node_count": 65547,
    "final_edge_count": 312418,
    "merged_nodes": 0,
    "merged_edges": 0,
    "unmerged_edge_count": 0,
    "qc_results": {
        "pass": true,
        "warnings": {},
        "errors": {},
        "primary_knowledge_sources": [
            "infores:goa",
            "infores:ubergraph"
        ],
        "aggregator_knowledge_sources": [],
        "node_curie_prefixes": {
            "UniProtKB": 38765,
            "GO": 26675,
            "PR": 45,
            "UBERON": 22,
            "UMLS": 21,
            "CHEBI": 11,
            "MESH": 8
        },
        "node_types": [
            {
                "type": [
                    "biolink:Protein"
                ],
                "count": 38810
            },
            {
                "type": [
                    "biolink:BiologicalProcess"
                ],
                "count": 13563
            },
            {
                "type": [
                    "biolink:MolecularActivity"
                ],
                "count": 9830
            },
            {
                "type": [
                    "biolink:CellularComponent"
                ],
                "count": 2723
            },
            {
                "type": [
                    "biolink:Pathway"
                ],
                "count": 585
            },
            {
                "type": [
                    "biolink:AnatomicalEntity"
                ],
                "count": 18
            },
            {
                "type": [
                    "biolink:ChemicalEntity"
                ],
                "count": 11
            },
            {
                "type": [
                    "biolink:GrossAnatomicalStructure"
                ],
                "count": 7
            }
        ],
        "node_properties": [
            "category",
            "equivalent_identifiers",
            "id",
            "information_content",
            "name",
            "taxon"
        ],
        "predicate_totals": {
            "biolink:catalyzes": 103029,
            "biolink:subclass_of": 86317,
            "biolink:actively_involved_in": 63776,
            "biolink:located_in": 57330,
            "biolink:has_part": 1894,
            "biolink:active_in": 69,
            "biolink:colocalizes_with": 3
        },
        "edges_with_publications": {
            "biolink:catalyzes": 675,
            "biolink:actively_involved_in": 629,
            "biolink:located_in": 206,
            "biolink:has_part": 78,
            "biolink:active_in": 64,
            "biolink:colocalizes_with": 3
        },
        "edge_properties": [
            "agent_type",
            "knowledge_level",
            "object",
            "original_object",
            "original_subject",
            "predicate",
            "primary_knowledge_source",
            "publications",
            "subject"
        ],
        "s-p-o_types": [
            {
                "subject_type": [
                    "biolink:Protein"
                ],
                "predicate": "biolink:actively_involved_in",
                "object_type": [
                    "biolink:BiologicalProcess"
                ],
                "count": 62915
            },
            {
                "subject_type": [
                    "biolink:Protein"
                ],
                "predicate": "biolink:located_in",
                "object_type": [
                    "biolink:CellularComponent"
                ],
                "count": 57330
            },
            {
                "subject_type": [
                    "biolink:MolecularActivity"
                ],
                "predicate": "biolink:subclass_of",
                "object_type": [
                    "biolink:MolecularActivity"
                ],
                "count": 35078
            },
            {
                "subject_type": [
                    "biolink:Protein"
                ],
                "predicate": "biolink:catalyzes",
                "object_type": [
                    "biolink:MolecularActivity"
                ],
                "count": 103029
            },
            {
                "subject_type": [
                    "biolink:BiologicalProcess"
                ],
                "predicate": "biolink:subclass_of",
                "object_type": [
                    "biolink:BiologicalProcess"
                ],
                "count": 39028
            },
            {
                "subject_type": [
                    "biolink:CellularComponent"
                ],
                "predicate": "biolink:subclass_of",
                "object_type": [
                    "biolink:CellularComponent"
                ],
                "count": 4147
            },
            {
                "subject_type": [
                    "biolink:Protein"
                ],
                "predicate": "biolink:subclass_of",
                "object_type": [
                    "biolink:ChemicalEntity"
                ],
                "count": 4840
            },
            {
                "subject_type": [
                    "biolink:Pathway"
                ],
                "predicate": "biolink:subclass_of",
                "object_type": [
                    "biolink:Pathway"
                ],
                "count": 1378
            },
            {
                "subject_type": [
                    "biolink:CellularComponent"
                ],
                "predicate": "biolink:has_part",
                "object_type": [
                    "biolink:Protein"
                ],
                "count": 1894
            },
            {
                "subject_type": [
                    "biolink:Protein"
                ],
                "predicate": "biolink:actively_involved_in",
                "object_type": [
                    "biolink:Pathway"
                ],
                "count": 861
            },
            {
                "subject_type": [
                    "biolink:Protein"
                ],
                "predicate": "biolink:subclass_of",
                "object_type": [
                    "biolink:Protein"
                ],
                "count": 1053
            },
            {
                "subject_type": [
                    "biolink:Pathway"
                ],
                "predicate": "biolink:subclass_of",
                "object_type": [
                    "biolink:BiologicalProcess"
                ],
                "count": 492
            },
            {
                "subject_type": [
                    "biolink:Protein"
                ],
                "predicate": "biolink:active_in",
                "object_type": [
                    "biolink:CellularComponent"
                ],
                "count": 69
            },
            {
                "subject_type": [
                    "biolink:CellularComponent"
                ],
                "predicate": "biolink:subclass_of",
                "object_type": [
                    "biolink:AnatomicalEntity"
                ],
                "count": 273
            },
            {
                "subject_type": [
                    "biolink:AnatomicalEntity"
                ],
                "predicate": "biolink:subclass_of",
                "object_type": [
                    "biolink:CellularComponent"
                ],
                "count": 10
            },
            {
                "subject_type": [
                    "biolink:CellularComponent"
                ],
                "predicate": "biolink:subclass_of",
                "object_type": [
                    "biolink:GrossAnatomicalStructure"
                ],
                "count": 14
            },
            {
                "subject_type": [
                    "biolink:GrossAnatomicalStructure"
                ],
                "predicate": "biolink:subclass_of",
                "object_type": [
                    "biolink:CellularComponent"
                ],
                "count": 4
            },
            {
                "subject_type": [
                    "biolink:Protein"
                ],
                "predicate": "biolink:colocalizes_with",
                "object_type": [
                    "biolink:CellularComponent"
                ],
                "count": 3
            }
        ],
        "source_breakdown": [
            {
                "aggregator": [
                    null
                ],
                "breakdown": {
                    "infores:goa": {
                        "node_count": 40503,
                        "edge_count": 226101,
                        "subject_prefixes": {
                            "UniProtKB": 224207,
                            "GO": 1894
                        },
                        "subject_types": [
                            {
                                "type": [
                                    "biolink:Protein"
                                ],
                                "count": 224207
                            },
                            {
                                "type": [
                                    "biolink:CellularComponent"
                                ],
                                "count": 1894
                            }
                        ],
                        "predicates": {
                            "biolink:catalyzes": 103029,
                            "biolink:actively_involved_in": 63776,
                            "biolink:located_in": 57330,
                            "biolink:has_part": 1894,
                            "biolink:active_in": 69,
                            "biolink:colocalizes_with": 3
                        },
                        "object_prefixes": {
                            "GO": 224207,
                            "UniProtKB": 1894
                        },
                        "object_types": [
                            {
                                "type": [
                                    "biolink:MolecularActivity"
                                ],
                                "count": 103029
                            },
                            {
                                "type": [
                                    "biolink:BiologicalProcess"
                                ],
                                "count": 62915
                            },
                            {
                                "type": [
                                    "biolink:CellularComponent"
                                ],
                                "count": 57402
                            },
                            {
                                "type": [
                                    "biolink:Protein"
                                ],
                                "count": 1894
                            },
                            {
                                "type": [
                                    "biolink:Pathway"
                                ],
                                "count": 861
                            }
                        ],
                        "s-p-o_types": [
                            {
                                "subject_type": [
                                    "biolink:Protein"
                                ],
                                "predicate": "biolink:actively_involved_in",
                                "object_type": [
                                    "biolink:BiologicalProcess"
                                ],
                                "count": 62915
                            },
                            {
                                "subject_type": [
                                    "biolink:Protein"
                                ],
                                "predicate": "biolink:located_in",
                                "object_type": [
                                    "biolink:CellularComponent"
                                ],
                                "count": 57330
                            },
                            {
                                "subject_type": [
                                    "biolink:Protein"
                                ],
                                "predicate": "biolink:catalyzes",
                                "object_type": [
                                    "biolink:MolecularActivity"
                                ],
                                "count": 103029
                            },
                            {
                                "subject_type": [
                                    "biolink:CellularComponent"
                                ],
                                "predicate": "biolink:has_part",
                                "object_type": [
                                    "biolink:Protein"
                                ],
                                "count": 1894
                            },
                            {
                                "subject_type": [
                                    "biolink:Protein"
                                ],
                                "predicate": "biolink:actively_involved_in",
                                "object_type": [
                                    "biolink:Pathway"
                                ],
                                "count": 861
                            },
                            {
                                "subject_type": [
                                    "biolink:Protein"
                                ],
                                "predicate": "biolink:active_in",
                                "object_type": [
                                    "biolink:CellularComponent"
                                ],
                                "count": 69
                            },
                            {
                                "subject_type": [
                                    "biolink:Protein"
                                ],
                                "predicate": "biolink:colocalizes_with",
                                "object_type": [
                                    "biolink:CellularComponent"
                                ],
                                "count": 3
                            }
                        ]
                    },
                    "infores:ubergraph": {
                        "node_count": 27251,
                        "edge_count": 86317,
                        "subject_prefixes": {
                            "GO": 80393,
                            "UniProtKB": 5887,
                            "UBERON": 14,
                            "UMLS": 11,
                            "PR": 6,
                            "MESH": 6
                        },
                        "subject_types": [
                            {
                                "type": [
                                    "biolink:BiologicalProcess"
                                ],
                                "count": 39028
                            },
                            {
                                "type": [
                                    "biolink:MolecularActivity"
                                ],
                                "count": 35078
                            },
                            {
                                "type": [
                                    "biolink:Protein"
                                ],
                                "count": 5893
                            },
                            {
                                "type": [
                                    "biolink:CellularComponent"
                                ],
                                "count": 4434
                            },
                            {
                                "type": [
                                    "biolink:Pathway"
                                ],
                                "count": 1870
                            },
                            {
                                "type": [
                                    "biolink:AnatomicalEntity"
                                ],
                                "count": 10
                            },
                            {
                                "type": [
                                    "biolink:GrossAnatomicalStructure"
                                ],
                                "count": 4
                            }
                        ],
                        "predicates": {
                            "biolink:subclass_of": 86317
                        },
                        "object_prefixes": {
                            "GO": 80102,
                            "CHEBI": 4840,
                            "PR": 1018,
                            "UBERON": 284,
                            "UniProtKB": 35,
                            "UMLS": 29,
                            "MESH": 9
                        },
                        "object_types": [
                            {
                                "type": [
                                    "biolink:BiologicalProcess"
                                ],
                                "count": 39520
                            },
                            {
                                "type": [
                                    "biolink:MolecularActivity"
                                ],
                                "count": 35078
                            },
                            {
                                "type": [
                                    "biolink:ChemicalEntity"
                                ],
                                "count": 4840
                            },
                            {
                                "type": [
                                    "biolink:CellularComponent"
                                ],
                                "count": 4161
                            },
                            {
                                "type": [
                                    "biolink:Pathway"
                                ],
                                "count": 1378
                            },
                            {
                                "type": [
                                    "biolink:Protein"
                                ],
                                "count": 1053
                            },
                            {
                                "type": [
                                    "biolink:AnatomicalEntity"
                                ],
                                "count": 273
                            },
                            {
                                "type": [
                                    "biolink:GrossAnatomicalStructure"
                                ],
                                "count": 14
                            }
                        ],
                        "s-p-o_types": [
                            {
                                "subject_type": [
                                    "biolink:MolecularActivity"
                                ],
                                "predicate": "biolink:subclass_of",
                                "object_type": [
                                    "biolink:MolecularActivity"
                                ],
                                "count": 35078
                            },
                            {
                                "subject_type": [
                                    "biolink:BiologicalProcess"
                                ],
                                "predicate": "biolink:subclass_of",
                                "object_type": [
                                    "biolink:BiologicalProcess"
                                ],
                                "count": 39028
                            },
                            {
                                "subject_type": [
                                    "biolink:CellularComponent"
                                ],
                                "predicate": "biolink:subclass_of",
                                "object_type": [
                                    "biolink:CellularComponent"
                                ],
                                "count": 4147
                            },
                            {
                                "subject_type": [
                                    "biolink:Protein"
                                ],
                                "predicate": "biolink:subclass_of",
                                "object_type": [
                                    "biolink:ChemicalEntity"
                                ],
                                "count": 4840
                            },
                            {
                                "subject_type": [
                                    "biolink:Pathway"
                                ],
                                "predicate": "biolink:subclass_of",
                                "object_type": [
                                    "biolink:Pathway"
                                ],
                                "count": 1378
                            },
                            {
                                "subject_type": [
                                    "biolink:Protein"
                                ],
                                "predicate": "biolink:subclass_of",
                                "object_type": [
                                    "biolink:Protein"
                                ],
                                "count": 1053
                            },
                            {
                                "subject_type": [
                                    "biolink:Pathway"
                                ],
                                "predicate": "biolink:subclass_of",
                                "object_type": [
                                    "biolink:BiologicalProcess"
                                ],
                                "count": 492
                            },
                            {
                                "subject_type": [
                                    "biolink:CellularComponent"
                                ],
                                "predicate": "biolink:subclass_of",
                                "object_type": [
                                    "biolink:AnatomicalEntity"
                                ],
                                "count": 273
                            },
                            {
                                "subject_type": [
                                    "biolink:AnatomicalEntity"
                                ],
                                "predicate": "biolink:subclass_of",
                                "object_type": [
                                    "biolink:CellularComponent"
                                ],
                                "count": 10
                            },
                            {
                                "subject_type": [
                                    "biolink:CellularComponent"
                                ],
                                "predicate": "biolink:subclass_of",
                                "object_type": [
                                    "biolink:GrossAnatomicalStructure"
                                ],
                                "count": 14
                            },
                            {
                                "subject_type": [
                                    "biolink:GrossAnatomicalStructure"
                                ],
                                "predicate": "biolink:subclass_of",
                                "object_type": [
                                    "biolink:CellularComponent"
                                ],
                                "count": 4
                            }
                        ]
                    }
                }
            }
        ],
        "predicates_by_knowledge_source": {
            "infores:goa": {
                "biolink:catalyzes": 103029,
                "biolink:actively_involved_in": 63776,
                "biolink:located_in": 57330,
                "biolink:has_part": 1894,
                "biolink:active_in": 69,
                "biolink:colocalizes_with": 3
            },
            "infores:ubergraph": {
                "biolink:subclass_of": 86317
            }
        }
    },
    "memgraph_dump": "https://stars.renci.org/var/plater/graphs/ViralProteome_Automat/be3a42b4b9d961a6/memgraph.cypher",
    "neo4j_dump": "https://stars.renci.org/var/plater/graphs/ViralProteome_Automat/be3a42b4b9d961a6/neo4j.dump"
}