{
  "infores_id": "infores:ubergraph",
  "name": "Ubergraph",
  "description": "Ubergraph is a unified OWL ontology integrating multiple biomedical ontologies including GO, UBERON, CL, CHEBI, HP, and others. It provides both redundant (with full inference closure for subclass relations) and non-redundant graph representations. This ingest uses the redundant version which contains complete transitive, reflexive subclass relations for ontological hierarchy reasoning.",
  "citations": [
    "Balhoff JP, Bayindir U, Caron AR, Matentzoglu N, Osumi-Sutherland D, Mungall CJ. Ubergraph: integrating OWL ontologies into a unified semantic graph. bioRxiv. 2022."
  ],
  "terms_of_use_info": {
    "license_name": "CC0 1.0 Universal (CC0 1.0) Public Domain Dedication",
    "license_url": "https://raw.githubusercontent.com/INCATools/ubergraph/master/LICENSE.txt"
  },
  "data_access_locations": [
    "Ubergraph Downloads: https://ubergraph.apps.renci.org/downloads/current/",
    "redundant-graph-table.tgz contains complete inference closure",
    "nonredundant-graph-table.tgz contains direct assertions only"
  ],
  "data_provision_mechanisms": [
    "file_download"
  ],
  "data_formats": [
    "tsv"
  ],
  "data_versioning_and_releases": "Ubergraph is updated regularly. Version information is available via SPARQL query against the ontology metadata. The created date is stored in the ontology and can be retrieved programmatically.",
  "pass": true,
  "warnings": {},
  "errors": {},
  "primary_knowledge_sources": [
    "infores:ubergraph"
  ],
  "aggregator_knowledge_sources": [],
  "predicate_totals": {
    "biolink:subclass_of": 10070398
  },
  "predicates_by_knowledge_source": {
    "infores:ubergraph": {
      "biolink:subclass_of": 10070398
    }
  },
  "edges_with_publications": {},
  "edge_properties": [
    "agent_type",
    "category",
    "id",
    "knowledge_level",
    "object",
    "original_object",
    "original_subject",
    "predicate",
    "sources",
    "subject"
  ],
  "node_type_counts": [
    {
      "type": [
        "biolink:SmallMolecule"
      ],
      "count": 183047
    },
    {
      "type": [
        "biolink:Protein"
      ],
      "count": 161789
    },
    {
      "type": [
        "biolink:Gene",
        "biolink:Protein"
      ],
      "count": 91398
    },
    {
      "type": [
        "biolink:Disease"
      ],
      "count": 43436
    },
    {
      "type": [
        "biolink:BiologicalProcess"
      ],
      "count": 24536
    },
    {
      "type": [
        "biolink:PhenotypicFeature"
      ],
      "count": 20891
    },
    {
      "type": [
        "biolink:ChemicalEntity"
      ],
      "count": 11050
    },
    {
      "type": [
        "biolink:GrossAnatomicalStructure"
      ],
      "count": 10471
    },
    {
      "type": [
        "biolink:MolecularActivity"
      ],
      "count": 10093
    },
    {
      "type": [
        "biolink:AnatomicalEntity"
      ],
      "count": 7552
    },
    {
      "type": [
        "biolink:CellularComponent"
      ],
      "count": 5385
    },
    {
      "type": [
        "biolink:Cell"
      ],
      "count": 5334
    },
    {
      "type": [
        "biolink:MolecularMixture"
      ],
      "count": 3091
    },
    {
      "type": [
        "biolink:Drug",
        "biolink:SmallMolecule"
      ],
      "count": 1838
    },
    {
      "type": [
        "biolink:Pathway"
      ],
      "count": 585
    },
    {
      "type": [
        "biolink:ChemicalMixture"
      ],
      "count": 504
    },
    {
      "type": [
        "biolink:Drug"
      ],
      "count": 160
    },
    {
      "type": [
        "biolink:SmallMolecule",
        "biolink:MolecularMixture"
      ],
      "count": 75
    }
  ],
  "node_curie_prefixes": {
    "CHEBI": 199735,
    "NCBIGene": 91398,
    "UniProtKB": 82241,
    "PR": 79548,
    "GO": 39255,
    "MONDO": 26271,
    "UMLS": 22211,
    "NCIT": 21553,
    "UBERON": 14553,
    "CL": 3039,
    "HP": 993,
    "EFO": 287,
    "MESH": 58,
    "DOID": 35,
    "OMIM": 28,
    "UNII": 15,
    "PUBCHEM.COMPOUND": 14,
    "CHEMBL.COMPOUND": 1
  },
  "node_properties": [
    "category",
    "equivalent_identifiers",
    "id",
    "information_content",
    "name"
  ],
  "invalid_edges_due_to_predicate_and_node_types": 9713433,
  "invalid_edges_due_to_missing_primary_ks": 0
}