{ "@id": "https://stars.renci.org/var/translator/releases/alliance/2025_12_15/", "@type": "sc:Dataset", "name": "alliance", "description": "A knowledge graph built for the NCATS Biomedical Data Translator project using Translator-Ingests, Biolink Model, and Node Normalizer.", "license": "MIT", "url": "https://stars.renci.org/var/translator/releases/alliance/2025_12_15/", "version": "2025_12_15", "dateCreated": "2025_12_15", "biolinkVersion": "4.3.6", "babelVersion": "2025sep1", "distribution": [ { "@id": "alliance.tar.xz", "@type": "cr:FileObject", "contentUrl": "alliance.tar.xz", "encodingFormat": "application/x-xz", "description": "Compressed tar archive containing the KGX files: nodes.jsonl and edges.jsonl" } ], "isBasedOn": [ { "id": "alliance", "name": "Alliance of Genome Resources (AGR) Reference Ingest Guide", "description": "The Alliance of Genome Resources (AGR) is a consortium of model organism databases and the Gene Ontology Consortium that provides a unified view of gene function, biological processes, phenotypes, and disease associations across multiple model organisms. The AGR aggregates and harmonizes data from member databases including MGI (mouse), RGD (rat), SGD (yeast), WormBase (C. elegans), FlyBase (D. melanogaster), ZFIN (zebrafish), and Xenbase (X. laevis and X. tropicalis).", "license": { "terms_of_use_url": "https://www.alliancegenome.org/privacy-warranty-licensing", "license_name": "CC0 1.0 Universal", "license_url": "https://creativecommons.org/publicdomain/zero/1.0/" }, "url": [ "All downloads: https://www.alliancegenome.org/downloads", "FMS (File Management System): https://fms.alliancegenome.org/download/" ], "version": "8.2.0" } ], "schema": { "nodes": [ { "category": [ "biolink:PhenotypicFeature" ], "count": 29, "id_prefixes": { "HP": 15, "EFO": 14 }, "attributes": { "name": 29, "equivalent_identifiers": 29, "information_content": 29 } }, { "category": [ "biolink:Disease" ], "count": 4, "id_prefixes": { "MONDO": 3, "EFO": 1 }, "attributes": { "name": 4, "equivalent_identifiers": 4, "information_content": 4 } }, { "category": [ "biolink:CellularComponent" ], "count": 562, "id_prefixes": { "GO": 562 }, "attributes": { "name": 562, "equivalent_identifiers": 562, "information_content": 562 } }, { "category": [ "biolink:Gene" ], "count": 655, "id_prefixes": { "NCBIGene": 554, "MGI": 100, "RGD": 1 }, "attributes": { "name": 655, "equivalent_identifiers": 655, "information_content": 83 } }, { "category": [ "biolink:Gene", "biolink:Protein" ], "count": 14148, "id_prefixes": { "NCBIGene": 14148 }, "attributes": { "name": 14148, "equivalent_identifiers": 14148, "information_content": 13172 } }, { "category": [ "biolink:AnatomicalEntity" ], "count": 664, "id_prefixes": { "UBERON": 664 }, "attributes": { "name": 664, "equivalent_identifiers": 664, "information_content": 664 } } ], "nodes_summary": { "total_count": 16062, "id_prefixes": { "NCBIGene": 14702, "UBERON": 664, "GO": 562, "MGI": 100, "EFO": 15, "HP": 15, "MONDO": 3, "RGD": 1 }, "attributes": { "name": 16062, "equivalent_identifiers": 16062, "information_content": 14514 } }, "edges": [ { "subject_category": [ "biolink:Gene", "biolink:Protein" ], "predicate": "biolink:expressed_in", "object_category": [ "biolink:AnatomicalEntity" ], "count": 100054, "primary_knowledge_sources": { "infores:mgi": 100054 }, "qualifiers": {}, "attributes": { "id": 100054, "category": 100054, "qualifiers": 100054, "publications": 100054, "aggregator_knowledge_source": 100054, "knowledge_level": 100054, "agent_type": 100054, "original_subject": 100054, "original_object": 100054 }, "subject_id_prefixes": { "NCBIGene": 100054 }, "object_id_prefixes": { "UBERON": 100054 } }, { "subject_category": [ "biolink:Gene" ], "predicate": "biolink:expressed_in", "object_category": [ "biolink:AnatomicalEntity" ], "count": 2388, "primary_knowledge_sources": { "infores:mgi": 2388 }, "qualifiers": {}, "attributes": { "id": 2388, "category": 2388, "qualifiers": 2388, "publications": 2388, "aggregator_knowledge_source": 2388, "knowledge_level": 2388, "agent_type": 2388, "original_subject": 2388, "original_object": 2388 }, "subject_id_prefixes": { "NCBIGene": 2222, "MGI": 166 }, "object_id_prefixes": { "UBERON": 2388 } }, { "subject_category": [ "biolink:Gene", "biolink:Protein" ], "predicate": "biolink:expressed_in", "object_category": [ "biolink:CellularComponent" ], "count": 6198, "primary_knowledge_sources": { "infores:rgd": 6198 }, "qualifiers": {}, "attributes": { "id": 6198, "category": 6198, "qualifiers": 6198, "publications": 6198, "aggregator_knowledge_source": 6198, "knowledge_level": 6198, "agent_type": 6198, "original_subject": 6198, "original_object": 6198 }, "subject_id_prefixes": { "NCBIGene": 6198 }, "object_id_prefixes": { "GO": 6198 } }, { "subject_category": [ "biolink:Gene", "biolink:Protein" ], "predicate": "biolink:has_phenotype", "object_category": [ "biolink:PhenotypicFeature" ], "count": 2527, "primary_knowledge_sources": { "infores:mgi": 2495, "infores:rgd": 32 }, "qualifiers": {}, "attributes": { "id": 2527, "category": 2527, "publications": 2527, "aggregator_knowledge_source": 2527, "knowledge_level": 2527, "agent_type": 2527, "original_subject": 2527, "original_object": 2527 }, "subject_id_prefixes": { "NCBIGene": 2527 }, "object_id_prefixes": { "EFO": 1508, "HP": 1019 } }, { "subject_category": [ "biolink:Gene" ], "predicate": "biolink:has_phenotype", "object_category": [ "biolink:Disease" ], "count": 4, "primary_knowledge_sources": { "infores:mgi": 4 }, "qualifiers": {}, "attributes": { "id": 4, "category": 4, "publications": 4, "aggregator_knowledge_source": 4, "knowledge_level": 4, "agent_type": 4, "original_subject": 4, "original_object": 4 }, "subject_id_prefixes": { "MGI": 4 }, "object_id_prefixes": { "MONDO": 4 } }, { "subject_category": [ "biolink:Gene" ], "predicate": "biolink:expressed_in", "object_category": [ "biolink:CellularComponent" ], "count": 92, "primary_knowledge_sources": { "infores:rgd": 92 }, "qualifiers": {}, "attributes": { "id": 92, "category": 92, "qualifiers": 92, "publications": 92, "aggregator_knowledge_source": 92, "knowledge_level": 92, "agent_type": 92, "original_subject": 92, "original_object": 92 }, "subject_id_prefixes": { "NCBIGene": 91, "RGD": 1 }, "object_id_prefixes": { "GO": 92 } }, { "subject_category": [ "biolink:Gene" ], "predicate": "biolink:has_phenotype", "object_category": [ "biolink:PhenotypicFeature" ], "count": 87, "primary_knowledge_sources": { "infores:mgi": 85, "infores:rgd": 2 }, "qualifiers": {}, "attributes": { "id": 87, "category": 87, "publications": 87, "aggregator_knowledge_source": 87, "knowledge_level": 87, "agent_type": 87, "original_subject": 87, "original_object": 87 }, "subject_id_prefixes": { "MGI": 51, "NCBIGene": 36 }, "object_id_prefixes": { "EFO": 45, "HP": 42 } }, { "subject_category": [ "biolink:Gene", "biolink:Protein" ], "predicate": "biolink:has_phenotype", "object_category": [ "biolink:Disease" ], "count": 44, "primary_knowledge_sources": { "infores:mgi": 42, "infores:rgd": 2 }, "qualifiers": {}, "attributes": { "id": 44, "category": 44, "publications": 44, "aggregator_knowledge_source": 44, "knowledge_level": 44, "agent_type": 44, "original_subject": 44, "original_object": 44 }, "subject_id_prefixes": { "NCBIGene": 44 }, "object_id_prefixes": { "MONDO": 43, "EFO": 1 } } ], "edges_summary": { "total_count": 111394, "predicates": { "biolink:expressed_in": 108732, "biolink:has_phenotype": 2662 }, "primary_knowledge_sources": { "infores:mgi": 105068, "infores:rgd": 6326 }, "predicates_by_knowledge_source": { "infores:mgi": { "biolink:expressed_in": 102442, "biolink:has_phenotype": 2626 }, "infores:rgd": { "biolink:expressed_in": 6290, "biolink:has_phenotype": 36 } }, "qualifiers": {}, "attributes": { "id": 111394, "category": 111394, "publications": 111394, "aggregator_knowledge_source": 111394, "knowledge_level": 111394, "agent_type": 111394, "original_subject": 111394, "original_object": 111394, "qualifiers": 108732 } } } }